genome.fa.s334.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  85  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16372287--16372339	26	2.0	26	88	0	79	28	20	22	28	1.99
16373159--16373237	26	3.0	26	98	0	149	26	20	24	29	1.99
16374056--16374108	26	2.0	26	96	0	97	26	18	26	28	1.98
16374909--16374983	37	2.0	37	94	0	132	17	37	22	22	1.94
16374983--16375035	26	2.0	26	92	0	88	28	20	22	28	1.99
16376753--16376805	26	2.0	26	96	0	97	26	18	26	28	1.98
16377638--16377690	26	2.0	26	92	0	88	28	18	24	28	1.98
16378526--16378581	26	2.2	26	83	0	67	30	16	21	32	1.95
16379018--16379068	26	2.0	26	92	0	84	29	15	23	31	1.95
16379909--16379987	26	3.0	26	94	0	140	27	21	25	25	1.99
16378921--16386390	893	8.5	887	85	4	9423	25	24	25	25	2.00
16385189--16385241	26	2.0	26	92	0	88	28	16	26	28	1.97
16386074--16386124	26	2.0	26	92	0	84	27	13	27	31	1.94
16386786--16386839	26	2.1	26	86	6	74	27	16	24	31	1.96
16386392--16391265	885	5.5	887	88	2	6801	25	24	24	25	2.00
16391213--16391291	26	3.0	26	90	0	122	27	18	24	29	1.98
16391498--16391550	26	2.0	26	100	0	106	26	20	26	26	1.99
16392377--16392429	26	2.0	26	96	0	97	26	18	26	28	1.98
16393242--16393292	26	2.0	26	88	0	75	33	19	21	25	1.97
16391427--16394139	865	3.1	863	82	8	3161	25	24	24	25	2.00
16395161--16395213	26	2.0	26	96	0	97	26	22	26	24	2.00
16396900--16396952	26	2.0	26	89	7	81	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16394252--16397816	890	4.1	888	83	5	4494	25	23	24	26	2.00
16398503--16398555	26	2.0	26	92	0	88	28	18	24	28	1.98
16401775--16401826	26	2.0	26	88	0	77	26	17	25	30	1.97
16402657--16402709	26	2.0	26	92	0	88	26	20	26	26	1.99
16400909--16404328	888	3.9	890	86	3	4730	25	23	24	25	2.00
16403545--16403597	26	2.0	26	92	7	90	26	16	26	30	1.97
16403707--16405122	774	1.8	773	90	3	2319	25	22	24	26	2.00
16405211--16409901	889	5.3	888	84	4	5855	24	23	25	25	2.00
16406966--16407015	26	1.9	26	100	0	100	28	20	28	24	1.99
16407848--16407900	26	2.0	26	96	0	97	28	20	24	26	1.99
16409610--16409662	26	2.0	26	85	0	70	30	16	22	30	1.96
16409636--16410068	166	2.6	165	80	5	436	22	27	31	19	1.98
16410664--16410716	26	2.0	26	92	0	88	28	16	26	28	1.97
16411531--16411894	158	2.3	157	94	0	638	23	27	28	20	1.99
16412549--16412601	26	2.0	26	88	0	79	32	20	22	24	1.98
16413090--16413142	26	2.0	26	88	0	79	26	18	26	28	1.98
16413984--16414036	26	2.0	26	100	0	106	26	20	26	26	1.99
16417460--16417564	26	4.0	26	97	0	201	27	20	25	26	1.99
16418403--16418455	26	2.0	26	96	0	97	26	18	26	28	1.98
16419291--16419343	26	2.0	26	92	0	88	26	16	26	30	1.97
16417512--16424612	890	8.0	889	87	2	9868	25	24	24	26	2.00
16421047--16421099	26	2.0	26	92	0	88	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16421937--16421989	26	2.0	26	96	0	97	26	18	26	28	1.98
16422825--16422877	26	2.0	26	92	0	88	28	18	24	28	1.98
16423697--16423749	26	2.0	26	88	0	79	28	18	22	30	1.98
16426141--16426192	26	2.0	25	88	3	77	28	19	23	28	1.98
16427262--16427287	4	6.5	4	100	0	52	0	26	73	0	0.84
16425284--16452652	888	30.7	891	75	11	16904	25	23	24	26	2.00
16427927--16427977	26	2.0	26	88	0	75	31	17	21	29	1.96
16430123--16430180	27	2.2	27	81	3	64	24	6	10	58	1.55
16430540--16430592	26	2.0	26	96	0	97	26	20	28	24	1.99
16431423--16431473	26	2.0	26	92	0	84	27	23	25	23	2.00
16434756--16434808	26	2.0	26	89	7	81	30	18	24	26	1.98
16434056--16436342	722	3.2	720	86	2	3175	26	23	23	26	2.00
16436210--16436262	26	2.0	26	100	0	106	26	20	26	26	1.99
16437090--16437142	26	2.0	26	92	0	88	26	16	26	30	1.97
16438962--16438992	12	2.6	12	100	0	62	6	41	25	25	1.79
16439717--16439768	26	2.0	25	96	3	95	26	21	25	26	1.99
16435505--16448863	864	15.3	863	86	4	16750	25	24	24	25	2.00
16435505--16452652	865	19.5	863	83	6	18955	25	24	24	25	2.00
16445760--16445812	26	2.0	26	92	0	88	28	18	24	28	1.98
16446175--16446231	26	2.2	25	81	6	60	22	7	10	59	1.54
16448401--16448452	26	2.0	26	92	0	86	26	15	26	30	1.96
16449379--16449431	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16450259--16450337	26	3.0	26	90	0	122	30	16	24	29	1.96
16452041--16452093	26	2.0	26	100	0	106	26	20	26	26	1.99
16454378--16454430	26	2.0	26	92	0	88	28	18	26	26	1.98
16452651--16455287	887	3.0	884	86	2	3620	24	24	24	26	2.00
16455967--16456017	26	2.0	26	96	0	93	27	9	27	35	1.88
16455240--16458682	890	3.9	886	86	3	4687	25	23	24	25	2.00
16457899--16459397	733	2.1	728	88	3	2237	26	22	23	27	2.00
16459334--16459386	26	2.0	26	96	0	97	26	18	26	28	1.98
16460221--16460273	26	2.0	26	100	0	106	26	20	26	26	1.99
16458627--16461133	887	2.8	886	90	2	3793	25	23	25	26	2.00
16462113--16462175	16	3.9	16	77	8	65	19	4	31	44	1.71
16462118--16462186	33	2.1	33	86	5	95	15	2	31	49	1.60
16462663--16462762	38	2.6	38	80	0	119	12	25	40	23	1.88
16462873--16462923	26	1.9	26	88	4	75	19	11	27	41	1.86
16463339--16463383	16	2.7	17	86	6	65	0	2	15	82	0.77
16463548--16463625	24	3.2	24	92	0	120	16	5	43	34	1.70
16463584--16463624	12	3.4	12	79	0	55	12	2	46	39	1.54
16463896--16464332	49	8.9	48	82	6	504	36	25	10	26	1.89
16467872--16467924	26	2.0	26	92	0	88	26	20	24	28	1.99
16468593--16468645	26	2.0	26	100	0	106	26	20	26	26	1.99
16469464--16469516	26	2.0	26	96	0	97	28	20	26	24	1.99
16467898--16473028	886	5.8	884	85	4	6438	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16470354--16470403	26	1.9	26	95	0	91	28	22	24	26	1.99
16471240--16471292	26	2.0	26	96	0	97	26	22	26	24	2.00
16472128--16472179	26	2.0	26	92	0	86	26	19	26	26	1.99
16473694--16473746	26	2.0	26	89	7	81	24	16	26	32	1.97
16474423--16474475	26	2.0	26	96	0	97	28	20	24	26	1.99
16475311--16475363	26	2.0	26	100	0	106	26	20	26	26	1.99
16473720--16480194	888	7.4	889	84	4	8148	25	23	24	26	2.00
16477941--16477993	26	2.0	26	88	0	79	30	22	20	26	1.98
16479678--16479730	26	2.0	26	100	0	106	26	16	26	30	1.97
16480258--16480308	26	2.0	26	92	0	84	29	17	25	27	1.98
16481128--16481180	26	2.0	26	96	0	97	26	18	26	28	1.98
16483773--16483825	26	2.0	26	96	0	97	28	20	22	28	1.99
16480191--16484738	872	5.2	879	86	3	6042	25	23	24	25	2.00
16485385--16485437	26	2.0	26	92	0	88	26	20	24	28	1.99
16486264--16486316	26	2.0	26	92	0	88	28	18	24	28	1.98
16488354--16488701	159	2.2	159	84	2	439	22	28	27	20	1.99
16490221--16490271	26	2.0	26	96	0	93	27	17	25	29	1.98
16490247--16492700	861	2.8	860	89	2	3679	25	24	24	25	2.00
16492674--16492726	26	2.0	26	96	0	97	26	18	22	32	1.97
16494226--16494278	26	2.0	26	96	0	97	28	20	24	26	1.99
16495113--16495194	26	3.2	26	96	0	146	28	17	24	30	1.97
16496036--16496085	26	1.9	26	95	0	91	30	20	26	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16492739--16496872	888	4.7	879	85	5	5377	25	23	24	26	2.00
16497708--16497757	26	1.9	26	95	0	91	28	16	26	30	1.96
16498768--16498820	26	2.0	26	96	0	97	26	18	26	28	1.98
16499664--16499714	26	2.0	26	92	0	84	27	19	23	29	1.98
16497994--16499910	896	2.1	893	87	1	2732	24	24	25	25	2.00
16499765--16500119	167	2.2	163	86	4	489	20	27	31	20	1.97
16500718--16500770	26	2.0	26	92	0	88	24	22	26	26	2.00
16503192--16503243	26	2.0	26	92	0	86	30	19	25	25	1.98
16504081--16504133	26	2.0	26	96	0	97	26	18	26	28	1.98
16502565--16505115	889	2.9	882	88	3	3683	24	23	25	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160