genome.fa.s334.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  48  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10523845--10523905	27	2.1	30	85	8	83	44	1	0	54	1.10
10524243--10524273	14	2.2	14	94	0	53	45	3	0	51	1.17
10524412--10524456	19	2.3	20	84	3	56	37	0	4	57	1.19
10525151--10525201	21	2.5	21	90	3	77	49	0	0	50	1.00
10525187--10525238	8	6.6	8	82	2	61	59	0	0	40	0.97
10525170--10525238	16	4.5	16	83	5	72	56	0	0	43	0.99
10525193--10525255	12	4.8	13	74	14	51	55	0	0	44	0.99
10526314--10526360	24	2.0	24	91	0	76	68	6	0	25	1.13
10527068--10527109	21	2.0	21	86	9	59	33	0	2	64	1.07
10527433--10527471	2	19.5	2	94	0	69	46	0	0	53	1.00
10529037--10529072	4	8.8	4	87	6	54	22	0	25	52	1.47
10532856--10532930	29	2.6	29	76	21	86	58	2	0	38	1.12
10534787--10534938	76	2.0	76	93	0	259	40	7	10	41	1.67
10534803--10534964	76	2.1	76	84	3	202	43	8	9	38	1.69
10534920--10535093	63	2.7	63	93	0	294	41	5	11	40	1.65
10536437--10536465	12	2.3	13	94	5	51	82	0	3	13	0.79
10536654--10536693	12	3.3	12	82	0	53	65	0	2	32	1.06
10536644--10536693	24	2.1	24	85	7	66	64	2	2	32	1.16
10537122--10537169	18	2.7	18	83	0	60	64	0	2	33	1.05
10538252--10538296	10	4.6	10	81	15	58	57	0	0	42	0.98
10538249--10538296	19	2.5	19	93	3	78	56	0	0	43	0.99
10539136--10539195	22	2.9	21	75	18	63	25	3	1	70	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10539290--10539339	24	2.1	23	85	3	64	64	2	2	32	1.16
10539300--10539338	13	3.5	11	83	16	53	69	0	0	30	0.89
10540796--10541005	52	4.2	52	78	10	179	39	15	13	31	1.86
10559046--10559104	22	2.9	20	79	16	68	25	3	1	69	1.13
10560279--10560306	5	5.6	5	100	0	56	82	0	0	17	0.68
10560711--10560905	52	3.9	51	75	13	181	40	16	13	29	1.86
10560708--10560832	49	2.5	49	81	11	139	39	19	13	28	1.89
10572661--10572711	21	2.4	21	84	12	61	27	1	0	70	0.98
10580623--10580647	5	5.0	5	100	0	50	80	0	0	20	0.72
10583357--10583448	18	5.3	18	68	12	57	30	2	29	38	1.69
10583351--10583448	36	2.8	35	78	9	103	29	3	29	37	1.72
10583444--10583665	111	2.0	111	88	0	327	33	9	23	33	1.86
10587741--10587783	22	2.0	22	86	9	61	62	0	0	37	0.95
10588012--10588071	27	2.2	28	82	8	70	28	55	3	13	1.54
10588703--10589209	252	2.0	253	89	1	775	30	16	14	37	1.89
10605484--10605537	24	2.2	24	80	0	63	16	5	1	75	1.07
10605832--10605877	17	2.8	16	80	6	56	26	2	2	69	1.11
10606338--10606414	35	2.2	35	79	9	86	37	15	10	36	1.82
10606890--10606932	22	2.0	22	85	0	59	46	6	13	32	1.71
10607146--10607175	14	2.1	14	93	0	51	26	3	0	70	1.03
10607213--10607332	34	3.5	35	77	4	111	31	7	18	42	1.78
10607315--10607379	34	1.9	34	90	0	103	35	9	15	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10609239--10609272	17	2.0	17	88	0	50	44	8	0	47	1.34
10609292--10609359	30	2.4	29	76	9	77	48	2	0	48	1.16
10614551--10614600	12	4.2	13	80	14	54	2	26	0	72	0.96
10614565--10614599	16	2.3	15	90	5	52	2	22	0	74	0.95
10614701--10614737	6	5.4	7	93	6	51	0	10	0	89	0.49
10616036--10616067	2	16.0	2	100	0	64	50	0	50	0	1.00
10616073--10616163	45	2.0	45	100	0	182	24	25	15	35	1.94
10616279--10616316	2	19.0	2	100	0	76	50	0	50	0	1.00
10623900--10623926	2	13.5	2	100	0	54	48	0	51	0	1.00
10626185--10626222	2	19.0	2	100	0	76	50	0	0	50	1.00
10629270--10629301	2	16.0	2	100	0	64	50	0	0	50	1.00
10629523--10629555	15	2.1	16	94	5	59	63	0	0	36	0.95
10629575--10629609	14	2.6	14	95	4	63	20	11	0	68	1.20
10630169--10630269	34	3.0	34	85	0	103	52	8	0	37	1.40
10630339--10630382	14	2.9	15	86	6	54	63	0	0	36	0.95
10638118--10638156	18	2.2	19	81	13	55	74	0	0	25	0.82
10639076--10639133	3	19.0	3	83	13	66	67	0	0	32	0.91
10639350--10639438	43	2.0	44	87	6	128	46	16	12	24	1.82
10641217--10641317	52	2.0	51	90	2	157	20	13	14	50	1.77
10642189--10642425	43	5.5	43	73	9	171	28	13	15	41	1.86
10642233--10642425	85	2.2	86	81	8	223	30	13	14	41	1.84
10642782--10642821	17	2.4	16	88	12	62	27	0	7	65	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10643397--10643432	17	2.1	17	90	10	56	33	5	5	55	1.46
10643491--10643646	21	7.2	21	72	18	97	33	3	8	55	1.46
10643512--10643689	47	3.9	45	83	10	202	32	2	9	55	1.47
10643481--10643695	113	1.9	110	84	8	281	32	3	9	54	1.50
10643608--10643647	18	2.1	18	86	9	53	30	2	10	57	1.45
10643653--10643701	12	4.1	12	76	10	55	28	6	10	55	1.57
10643482--10643689	24	9.2	24	72	18	180	31	3	9	54	1.51
10643696--10643830	59	2.3	58	87	3	189	31	6	12	49	1.66
10643720--10643884	58	2.8	59	83	5	181	30	5	12	50	1.63
10643499--10643903	20	19.7	20	65	20	101	32	4	10	52	1.58
10648887--10648916	15	1.9	16	93	6	53	6	0	16	76	0.99
10650430--10650468	18	2.1	19	85	4	53	46	0	5	48	1.24
10650818--10650852	16	2.2	16	89	0	52	11	11	8	68	1.39
10651210--10651383	37	4.7	38	79	8	171	36	17	14	31	1.91
10651423--10651580	83	1.9	83	89	0	244	34	18	13	32	1.90
10651361--10651806	188	2.3	190	82	9	526	33	15	15	35	1.89
10651422--10651597	83	2.1	83	85	2	237	32	18	14	34	1.91
10651594--10651784	95	2.0	95	85	6	262	33	14	14	37	1.86
10651422--10651975	286	1.9	283	82	4	677	33	15	14	35	1.89
10652436--10652476	15	2.7	15	84	0	55	41	12	26	19	1.87
10652463--10652549	38	2.3	38	91	0	138	29	19	21	28	1.98
10652544--10652627	43	1.9	44	92	2	143	27	7	22	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10652505--10652739	131	1.8	130	89	0	371	31	11	20	35	1.89
10652726--10652759	12	2.8	12	90	0	50	44	5	23	26	1.76
10653459--10653596	22	6.3	22	84	3	179	23	18	23	34	1.97
10654536--10654608	22	3.4	20	77	17	67	4	16	2	76	1.05
10654573--10654617	22	2.1	22	87	4	65	4	15	4	75	1.12
10657437--10657472	2	18.0	2	100	0	72	50	0	0	50	1.00
10660529--10660559	2	15.0	2	93	6	53	48	3	0	48	1.17
10660842--10660876	14	2.6	14	86	4	54	17	11	2	68	1.31
10661441--10661539	34	3.0	33	75	7	92	47	11	3	38	1.55
10661606--10661636	14	2.2	14	94	0	53	67	0	0	32	0.91
10661611--10661653	14	2.9	15	86	6	52	65	0	0	34	0.93
10661858--10661935	34	2.3	33	81	14	88	41	5	5	48	1.47
10669287--10669334	4	12.2	4	78	12	55	72	2	0	25	0.95
10670185--10670233	20	2.5	19	83	9	62	73	6	6	14	1.22
10670283--10670317	6	6.0	6	93	6	63	65	0	0	34	0.93
10670285--10670321	11	3.4	11	89	10	58	67	0	0	32	0.91
10670281--10670320	17	2.4	17	91	0	71	70	0	0	30	0.88
10670548--10670727	43	3.9	44	75	18	127	45	13	13	27	1.81
10676721--10676766	15	3.0	15	93	3	74	43	6	19	30	1.76
10678108--10678344	43	5.5	43	76	9	214	28	12	14	43	1.82
10678108--10678341	86	2.7	87	81	8	271	29	12	14	43	1.82
10678699--10678738	17	2.4	17	88	12	64	25	0	7	67	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10679387--10679601	24	9.5	24	70	18	142	32	4	9	53	1.53
10679493--10679576	42	2.0	42	83	4	107	30	3	14	51	1.59
10679601--10679735	59	2.3	58	87	3	189	31	6	12	49	1.66
10679625--10679786	58	2.8	59	83	6	179	30	5	12	50	1.63
10679404--10679805	20	19.7	20	64	20	104	32	5	11	50	1.60
10684790--10684819	15	1.9	16	93	6	53	6	0	16	76	0.99
10686465--10686503	15	2.6	15	83	0	51	5	25	0	69	1.09
10686760--10686795	3	12.0	3	100	0	72	66	0	0	33	0.92
10687115--10687245	37	3.5	37	81	8	142	34	16	17	32	1.92
10687288--10687462	83	2.1	83	89	2	262	33	17	13	34	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160