genome.fa.s334.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  86  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16504959--16505009	26	2.0	26	84	0	66	25	15	23	35	1.94
16505144--16505196	26	2.0	26	92	0	88	26	16	26	30	1.97
16504946--16505355	185	2.2	185	86	4	560	20	24	30	24	1.98
16507301--16507354	26	2.1	26	89	6	83	29	16	22	31	1.96
16508192--16508244	26	2.0	26	96	0	97	26	22	24	26	2.00
16509917--16509969	26	2.0	26	88	0	79	26	18	24	30	1.98
16511438--16511490	26	2.0	26	88	0	79	24	18	26	30	1.98
16512329--16512381	26	2.0	26	88	0	79	26	18	24	30	1.98
16511404--16513609	890	2.5	884	86	3	2987	24	24	25	26	2.00
16513852--16513904	26	2.0	26	92	0	88	24	18	28	28	1.98
16514735--16514787	26	2.0	26	100	0	106	26	20	26	26	1.99
16513609--16516534	889	3.3	886	87	2	4063	25	24	24	25	2.00
16515624--16515676	26	2.0	26	96	0	97	26	18	26	28	1.98
16518104--16518156	26	2.0	26	100	0	106	26	20	26	26	1.99
16516486--16521891	885	6.2	882	84	5	6546	25	24	24	25	2.00
16520745--16520797	26	2.0	26	96	0	97	26	15	26	32	1.95
16519884--16521891	880	2.3	880	84	4	2516	25	24	25	24	2.00
16521603--16521662	26	2.4	26	94	5	106	25	23	25	26	2.00
16522217--16522269	26	2.0	26	88	0	79	30	18	22	28	1.98
16523112--16523164	26	2.0	26	96	0	97	28	16	24	30	1.97
16521894--16524990	889	3.5	886	88	2	4410	25	24	24	25	2.00
16527914--16527966	26	2.0	26	81	0	61	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16527207--16528110	448	2.0	452	84	4	1198	24	28	27	19	1.99
16528791--16528843	26	2.0	26	92	0	88	28	18	24	28	1.98
16527656--16530542	858	3.3	863	85	6	3713	25	24	24	25	2.00
16531532--16531594	16	3.9	16	77	8	65	19	4	31	44	1.71
16531537--16531605	33	2.1	33	86	5	95	15	2	31	49	1.60
16532095--16532215	38	3.2	38	92	0	188	13	25	38	23	1.91
16532785--16532828	17	2.5	17	92	3	70	0	2	15	81	0.78
16532994--16533049	12	4.7	12	71	8	51	16	5	46	32	1.69
16532994--16533049	24	2.3	23	85	8	76	16	5	46	32	1.69
16533096--16533143	4	12.8	4	82	8	57	0	0	16	83	0.65
16533095--16533144	12	4.1	12	85	12	66	0	0	16	84	0.63
16533094--16533143	17	3.0	16	88	8	73	0	0	18	82	0.68
16533096--16533143	14	3.2	16	82	17	75	0	0	16	83	0.65
16533319--16533841	49	10.7	49	86	5	686	37	26	11	25	1.90
16545939--16546001	16	3.9	16	77	8	65	19	4	31	44	1.71
16545930--16546003	33	2.2	33	76	4	78	17	4	29	48	1.65
16546276--16546322	24	2.0	24	83	8	60	27	2	0	70	0.99
16549494--16549546	26	2.0	26	96	0	97	26	18	26	28	1.98
16552119--16552170	26	2.0	26	96	0	95	28	19	25	26	1.98
16547994--16554825	889	7.8	887	85	4	8689	25	23	24	26	2.00
16553007--16553059	26	2.0	26	96	0	97	26	18	26	28	1.98
16554774--16554844	26	2.7	26	93	0	115	30	16	25	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16555550--16555602	26	2.0	26	96	0	97	28	20	24	26	1.99
16556434--16556486	26	2.0	26	92	0	88	28	16	26	28	1.97
16554926--16557919	864	3.4	862	84	6	3615	25	22	23	27	2.00
16562202--16562254	26	2.0	26	96	0	97	26	18	26	28	1.98
16563091--16563140	26	1.9	26	95	0	91	30	18	26	26	1.98
16560456--16563494	888	3.4	887	88	2	4309	25	24	25	25	2.00
16563477--16563506	12	2.5	12	94	0	51	23	13	23	40	1.90
16563645--16563696	26	2.0	26	92	7	88	26	15	26	30	1.96
16566282--16566335	27	2.0	26	89	3	81	29	18	24	27	1.98
16569775--16569827	26	2.0	26	96	0	97	26	18	26	28	1.98
16568912--16571570	881	3.0	882	88	3	3917	25	24	24	26	2.00
16570656--16570708	26	2.0	26	92	0	88	28	20	22	28	1.99
16572549--16572611	16	3.9	16	77	8	65	19	4	31	44	1.71
16572554--16572622	33	2.1	33	86	5	95	15	2	31	49	1.60
16573106--16573198	38	2.4	38	85	0	114	11	23	39	24	1.88
16573768--16573822	23	2.6	21	78	13	58	3	1	10	83	0.84
16573788--16573820	17	1.9	17	100	0	66	0	0	15	84	0.61
16573987--16574066	12	6.7	12	70	11	65	16	5	46	32	1.68
16573987--16574066	24	3.3	23	88	8	115	16	5	46	32	1.68
16574112--16574151	8	4.9	8	90	3	62	0	0	17	82	0.67
16574113--16574147	4	8.8	4	87	0	52	0	0	17	82	0.66
16574112--16574148	12	3.1	12	88	11	58	0	0	16	83	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16574113--16574147	16	2.2	16	100	0	70	0	0	17	82	0.66
16574323--16574746	49	8.7	49	84	5	529	36	25	11	25	1.90
16574323--16574746	96	4.3	98	85	7	549	36	25	11	25	1.90
16586714--16586776	16	3.9	16	77	8	65	19	4	31	44	1.71
16586719--16586787	33	2.1	33	86	5	95	15	2	31	49	1.60
16587528--16587561	17	1.9	18	94	5	61	64	8	2	23	1.36
16587824--16587876	22	2.5	21	85	8	72	1	1	11	84	0.77
16587832--16587874	16	2.6	16	88	7	59	0	2	13	83	0.74
16588041--16588126	24	3.5	24	88	1	118	16	5	45	32	1.71
16588165--16588216	12	4.4	12	80	11	63	0	0	17	82	0.66
16588167--16588215	4	12.8	4	80	8	57	0	0	16	83	0.64
16588165--16588207	18	2.5	17	88	7	68	0	0	16	83	0.64
16589159--16589212	27	2.0	26	89	3	81	27	20	24	27	1.99
16591905--16591957	26	2.0	26	88	0	79	26	18	26	28	1.98
16592760--16592810	26	2.0	26	100	0	102	27	19	27	25	1.99
16595392--16595441	25	2.0	26	88	4	75	30	18	22	30	1.97
16596287--16596337	26	2.0	26	96	0	93	29	15	27	27	1.96
16592153--16598182	891	6.8	885	87	3	8236	25	24	24	25	2.00
16597177--16597229	26	2.0	26	96	0	97	26	18	26	28	1.98
16598909--16598958	26	1.9	26	92	8	84	32	16	24	28	1.96
16598201--16601457	888	3.7	887	87	3	4532	25	23	24	26	2.00
16600685--16600737	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16602073--16602122	26	1.9	26	87	0	73	32	18	28	22	1.97
16602960--16603012	26	2.0	26	85	0	70	28	18	24	28	1.98
16601462--16609919	890	9.6	889	87	2	11674	25	24	24	26	2.00
16603855--16603906	25	2.0	26	96	3	97	26	19	26	26	1.99
16604744--16604796	26	2.0	26	92	0	88	30	20	26	22	1.98
16605631--16605683	26	2.0	26	100	0	106	26	20	26	26	1.99
16608268--16608323	26	2.2	26	100	0	112	26	16	25	32	1.96
16609153--16609204	25	2.0	26	88	3	79	26	17	25	30	1.97
16611478--16611529	25	2.0	26	88	3	79	26	17	25	30	1.97
16612574--16612626	26	2.0	26	92	0	88	26	16	26	30	1.97
16613461--16613510	26	1.9	26	95	0	91	30	14	30	26	1.94
16615184--16615235	26	2.0	26	92	0	86	28	21	25	25	1.99
16616071--16616123	26	2.0	26	92	0	88	30	18	24	26	1.98
16616097--16616439	157	2.2	157	82	5	388	23	30	27	19	1.98
16618740--16618792	26	2.0	26	88	0	79	24	16	26	32	1.97
16624093--16624145	26	2.0	26	92	0	88	26	20	26	26	1.99
16624959--16625015	19	3.0	19	97	0	105	15	35	21	28	1.94
16625016--16625068	26	2.0	26	100	0	106	26	20	26	26	1.99
16625909--16625959	26	2.0	26	96	0	93	27	17	27	27	1.98
16626792--16626844	26	2.0	26	92	0	88	28	18	24	28	1.98
16627661--16627713	26	2.0	26	96	0	97	26	18	26	28	1.98
16628382--16628432	26	2.0	26	92	0	84	27	19	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16627492--16628940	719	2.0	718	86	2	1981	24	26	24	25	2.00
16629272--16629324	26	2.0	26	96	0	97	26	18	26	28	1.98
16630162--16630214	26	2.0	26	96	0	97	28	20	24	26	1.99
16628210--16636648	887	9.7	884	84	5	10496	25	24	24	25	2.00
16631898--16631950	26	2.0	26	92	0	88	28	18	26	26	1.98
16631034--16636648	886	6.4	884	83	6	6893	25	24	24	26	2.00
16634489--16634541	26	2.0	26	100	0	106	26	16	26	30	1.97
16635345--16635397	26	2.0	26	92	0	88	26	20	24	28	1.99
16636241--16636290	26	1.9	26	91	0	82	32	20	24	24	1.98
16633684--16636648	859	3.4	877	85	5	3954	24	23	25	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160