genome.fa.s334.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  20  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5582254--5582787	60	9.0	58	83	8	639	45	8	12	33	1.73
5587095--5587160	25	2.5	28	79	13	79	74	1	15	9	1.14
5588512--5588644	34	3.9	33	73	6	106	33	14	10	41	1.80
5588526--5588695	17	10.0	17	71	1	99	33	14	9	42	1.78
5588461--5588696	51	4.6	50	76	8	192	35	13	9	40	1.78
5588527--5588695	34	5.0	34	74	5	137	33	14	8	42	1.77
5590876--5591008	62	2.1	61	80	10	144	52	3	10	33	1.54
5590910--5591295	59	6.5	58	77	8	364	46	5	10	37	1.63
5590910--5591298	120	3.2	116	78	9	347	46	5	11	36	1.63
5590911--5591295	179	2.1	179	83	6	485	46	5	10	37	1.62
5605260--5605317	27	2.1	28	93	6	100	25	20	10	43	1.84
5607103--5607161	21	2.9	20	85	9	84	50	11	3	33	1.56
5607264--5607312	20	2.4	20	86	10	64	85	2	6	6	0.80
5607264--5607315	22	2.4	22	87	3	70	84	1	7	5	0.84
5607266--5607311	14	3.4	13	82	8	56	84	2	6	6	0.84
5608147--5608216	19	3.5	19	76	5	68	5	14	5	74	1.19
5608148--5608219	20	3.7	20	79	5	76	6	15	5	72	1.25
5609613--5609638	2	13.0	2	100	0	52	50	0	0	50	1.00
5611708--5611794	45	1.9	45	95	0	156	45	10	12	31	1.76
5613273--5613317	22	1.9	25	86	13	69	42	0	0	57	0.98
5613305--5613349	14	3.3	13	82	11	54	37	0	0	62	0.96
5613546--5613604	23	2.6	23	81	2	75	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5613605--5613655	15	3.5	15	80	17	54	50	0	0	49	1.00
5614192--5614264	25	2.8	26	74	15	71	57	0	1	41	1.07
5614270--5614316	10	5.0	10	77	12	55	68	0	0	31	0.90
5614270--5614311	19	2.2	18	84	16	50	71	0	0	28	0.86
5621729--5621811	20	4.1	20	70	23	66	56	3	0	39	1.17
5623065--5623140	38	2.0	38	97	0	143	23	11	7	56	1.61
5623380--5623474	30	3.2	30	81	10	122	52	3	4	40	1.37
5625729--5625754	13	2.0	13	100	0	52	46	7	15	30	1.74
5633831--5633861	16	1.9	16	100	0	62	48	19	12	19	1.81
5637285--5637356	39	1.9	37	86	10	103	48	11	8	31	1.68
5638069--5638183	56	2.1	56	91	0	185	22	21	13	41	1.89
5638883--5638931	22	2.2	22	88	0	71	24	14	18	42	1.87
5639330--5639363	18	1.9	18	88	5	52	52	5	0	41	1.25
5643705--5643777	17	4.2	17	70	10	58	78	0	13	8	0.97
5643704--5643760	24	2.5	24	80	5	64	78	0	12	8	0.95
5643711--5643777	22	3.0	21	78	20	66	77	0	13	8	0.98
5644468--5644587	52	2.3	52	82	5	136	30	23	8	38	1.84
5644923--5645022	25	4.0	25	76	7	87	22	33	6	39	1.78
5644965--5645039	25	3.0	25	86	0	87	20	30	8	41	1.81
5645573--5645729	52	3.0	52	84	5	185	27	22	7	43	1.79
5648181--5648247	35	1.9	35	100	0	134	43	8	11	35	1.73
5648280--5648321	15	2.7	15	79	17	50	26	2	2	69	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5649258--5649286	9	3.3	9	95	4	51	10	0	0	89	0.48
5649489--5649537	2	24.5	2	100	0	98	48	0	0	51	1.00
5649777--5650239	243	1.9	244	91	2	770	35	9	9	45	1.69
5650432--5650490	22	2.7	21	81	5	64	62	6	6	23	1.44
5650542--5650598	20	3.0	19	78	12	55	50	7	5	36	1.52
5650601--5650659	32	1.9	30	86	6	82	28	3	3	64	1.26
5650928--5650985	17	3.4	16	81	13	71	29	0	1	68	0.99
5650905--5650986	18	4.6	18	75	14	80	32	3	1	62	1.21
5650928--5650985	9	6.8	8	81	14	71	29	0	1	68	0.99
5651559--5651772	114	1.9	113	83	10	276	39	9	4	45	1.58
5651559--5651772	115	1.9	112	83	8	281	39	9	4	45	1.58
5651578--5651822	115	2.1	111	78	9	251	39	8	5	45	1.59
5653793--5653968	9	19.7	9	66	20	59	60	5	1	32	1.27
5653809--5653876	29	2.4	27	85	11	84	64	4	1	29	1.21
5653793--5653885	36	2.6	36	77	5	89	62	5	1	31	1.25
5653853--5653894	16	2.6	17	77	11	52	59	7	4	28	1.44
5653880--5653949	27	2.5	28	79	11	72	61	5	1	31	1.28
5653935--5653985	18	2.8	18	84	3	66	64	5	1	27	1.27
5654575--5654649	27	2.9	25	78	9	80	30	2	0	66	1.05
5654572--5654642	8	8.5	8	75	13	54	29	2	0	67	1.05
5654572--5654642	25	2.8	26	75	12	76	29	2	0	67	1.05
5654572--5654651	17	4.7	17	72	9	65	28	2	0	68	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5656481--5656514	2	17.0	2	100	0	68	50	0	0	50	1.00
5663263--5663536	149	1.8	148	83	2	361	43	8	11	36	1.72
5664215--5664295	22	3.7	22	84	0	99	46	0	12	40	1.41
5664449--5664497	22	2.2	22	85	7	64	48	4	8	38	1.52
5664457--5664499	22	2.0	22	90	9	70	46	2	9	41	1.48
5664483--5664523	22	1.9	22	90	5	66	43	2	7	46	1.44
5664516--5664571	26	2.2	26	81	9	62	50	3	10	35	1.55
5664598--5664697	22	4.8	21	70	11	71	48	8	5	39	1.55
5664616--5664805	94	2.0	94	95	0	344	48	6	5	39	1.52
5664738--5665022	22	13.1	22	72	10	194	51	4	6	37	1.47
5664917--5664959	19	2.3	19	87	0	59	53	4	2	39	1.34
5665101--5665183	22	3.8	22	80	0	76	48	8	7	36	1.61
5665513--5665640	44	2.9	44	75	6	116	47	3	7	40	1.51
5665513--5665658	22	6.6	22	70	7	98	47	4	8	40	1.52
5665712--5665745	16	2.2	15	89	5	50	58	2	0	38	1.13
5665729--5665784	21	2.6	22	80	11	71	50	5	5	39	1.48
5665828--5665877	22	2.3	21	80	10	55	66	6	2	26	1.26
5665840--5665890	11	4.5	11	76	11	50	64	7	1	25	1.31
5665845--5665929	22	3.9	22	81	6	82	57	7	3	31	1.42
5665890--5665942	22	2.4	21	87	6	70	49	3	7	39	1.49
5665814--5666083	141	1.9	140	80	3	310	49	6	6	37	1.55
5665979--5666171	22	8.8	22	72	3	120	48	7	5	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5665979--5666146	44	3.8	42	77	9	142	49	7	4	38	1.51
5665985--5666208	66	3.4	66	75	4	157	48	7	5	38	1.55
5666522--5666600	21	3.8	21	77	12	81	46	7	7	37	1.61
5666573--5666624	27	1.9	27	92	0	86	53	3	5	36	1.43
5666573--5666640	27	2.5	28	81	9	79	51	4	4	39	1.42
5666594--5666703	48	2.3	48	84	6	134	53	9	2	34	1.47
5668360--5668403	22	2.0	22	95	0	79	47	9	27	15	1.76
5670736--5670770	3	11.7	3	87	0	52	5	0	31	62	1.18
5685448--5685518	19	3.7	19	94	0	115	25	9	21	43	1.83
5685768--5685855	25	3.5	25	88	0	113	21	27	17	34	1.95
5691632--5692258	317	2.0	317	86	6	892	36	21	13	29	1.91
5693017--5693042	4	6.5	4	100	0	52	26	0	0	73	0.84
5695709--5696075	185	2.0	185	92	1	610	34	17	19	28	1.95
5699240--5699334	46	2.1	46	97	0	181	38	16	17	26	1.91
5702353--5702378	8	3.2	8	100	0	52	0	26	23	50	1.50
5707692--5707716	6	4.2	6	100	0	50	48	0	36	16	1.46
5708968--5709005	20	1.9	20	88	0	58	84	0	15	0	0.63
5712372--5712458	42	2.1	42	95	0	156	33	14	12	39	1.85
5712588--5712628	4	10.0	4	91	2	55	80	0	19	0	0.71
5712981--5713040	21	2.9	21	78	14	61	35	1	6	56	1.35
5719869--5719915	22	2.1	22	96	0	85	29	2	12	55	1.49
5719993--5720037	21	2.1	21	83	0	54	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5722463--5722524	26	2.4	25	82	12	72	46	4	0	48	1.23
5723719--5723747	14	2.1	14	100	0	58	44	20	0	34	1.52
5726261--5726295	12	3.0	12	91	4	54	37	0	0	62	0.95
5730552--5730592	21	2.0	21	90	0	64	48	0	2	48	1.14
5749823--5749859	2	18.5	2	94	0	65	51	2	0	45	1.15
5757394--5757424	12	2.5	13	89	10	55	45	9	0	45	1.36
5757638--5757693	28	2.0	28	96	0	103	21	26	3	48	1.66
5762146--5762270	62	2.0	62	92	3	207	29	12	37	20	1.89
5764904--5764934	14	2.2	14	100	0	62	51	6	6	35	1.53
5766878--5766908	2	15.5	2	100	0	62	51	48	0	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160