genome.fa.s334.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  104  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19738745--19738798	10	5.5	10	75	20	51	22	1	1	74	1.02
19738882--19738908	4	6.8	4	100	0	54	77	0	0	22	0.76
19739361--19739390	16	1.9	16	93	6	53	3	10	0	86	0.67
19740177--19740201	3	8.3	3	100	0	50	68	0	0	32	0.90
19744917--19744946	9	3.2	9	95	4	51	63	0	0	36	0.95
19744919--19744948	10	3.1	10	95	4	53	63	0	0	36	0.95
19747302--19747331	9	3.2	9	95	4	51	66	0	0	33	0.92
19750650--19750692	20	2.2	19	84	12	52	72	0	4	23	1.04
19758718--19758760	10	4.1	10	77	11	50	32	0	16	51	1.45
19776415--19776920	44	11.7	43	73	10	293	31	10	16	40	1.83
19776431--19776753	130	2.5	131	80	6	361	29	10	17	42	1.82
19776637--19776919	86	3.3	84	72	11	241	33	11	15	39	1.84
19777648--19777711	13	4.8	13	75	12	60	32	0	9	57	1.30
19787058--19787221	87	1.9	87	84	2	222	32	12	17	37	1.86
19787554--19787609	30	2.0	27	89	10	85	41	1	3	53	1.29
19788412--19788445	16	2.2	15	89	5	50	8	0	8	82	0.85
19788819--19788856	3	12.7	3	100	0	76	68	0	0	31	0.90
19788914--19788982	31	2.3	31	84	2	95	42	11	1	44	1.49
19789451--19789502	20	2.5	21	84	3	70	21	13	28	36	1.91
19793400--19793427	11	2.5	11	100	0	56	50	0	0	50	1.00
19794530--19794577	14	3.7	12	81	15	51	83	2	12	2	0.83
19798292--19798685	145	2.7	141	83	8	445	31	15	13	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19798930--19798968	17	2.3	17	86	0	51	33	12	20	33	1.91
19798938--19798971	17	2.0	17	100	0	68	29	11	17	41	1.85
19799679--19800045	183	2.0	183	98	0	707	22	11	20	44	1.85
19801427--19801466	20	2.0	21	85	5	55	45	7	7	40	1.61
19802459--19802486	11	2.5	11	100	0	56	92	0	7	0	0.37
19803861--19803943	31	2.7	30	81	10	96	28	16	21	32	1.96
19804136--19804246	3	37.7	3	84	7	147	31	0	3	63	1.17
19805063--19805112	22	2.3	22	89	6	75	20	4	0	76	0.95
19805184--19805233	20	2.5	20	80	9	57	82	8	10	0	0.86
19805184--19805232	25	2.0	25	88	8	73	81	8	10	0	0.87
19809530--19809573	10	4.5	10	85	5	63	86	0	13	0	0.57
19809537--19809573	14	2.7	13	88	12	56	89	0	10	0	0.49
19809538--19809573	9	3.9	9	88	3	54	88	0	11	0	0.50
19809830--19809860	15	2.0	16	93	6	55	70	0	22	6	1.09
19811159--19811361	55	3.7	55	75	5	196	21	18	16	43	1.88
19811159--19811421	55	4.8	53	75	6	186	20	19	16	43	1.88
19811797--19811966	3	57.7	3	76	11	147	31	0	5	62	1.21
19811855--19811955	23	4.5	23	75	17	88	33	0	8	56	1.37
19812776--19812822	19	2.5	19	85	0	58	14	2	6	76	1.08
19812796--19812847	13	3.8	13	75	9	50	17	1	3	76	1.02
19812791--19812880	29	3.0	29	78	16	96	18	4	4	72	1.19
19814113--19814186	33	2.2	33	85	0	94	37	17	16	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19814277--19814368	33	2.7	33	81	8	103	36	19	15	28	1.92
19814343--19814402	28	2.1	28	84	6	77	30	20	15	35	1.93
19814524--19814620	33	3.1	32	72	18	87	32	19	17	29	1.95
19814580--19814645	33	2.0	33	81	0	78	37	19	13	28	1.90
19817086--19817156	16	4.7	15	77	8	63	46	28	2	22	1.66
19818378--19818409	13	2.5	13	94	0	55	43	6	0	50	1.27
19819170--19819218	15	3.3	15	81	16	57	51	2	0	46	1.12
19819165--19819243	28	2.8	29	81	9	83	46	1	2	49	1.23
19819595--19819629	17	2.1	17	88	0	52	65	0	0	34	0.93
19819607--19819650	14	3.0	15	73	6	54	56	2	2	38	1.24
19821468--19821558	50	1.9	48	86	10	134	28	16	14	40	1.87
19821802--19821845	2	22.0	2	100	0	88	50	50	0	0	1.00
19824887--19824932	24	1.9	24	100	0	92	45	17	10	26	1.81
19825987--19826411	211	2.0	209	89	0	652	40	8	13	37	1.76
19827919--19827949	2	15.5	2	93	0	53	48	0	0	51	1.00
19829227--19829437	58	3.7	58	90	3	311	44	7	11	36	1.69
19829227--19829437	115	1.8	115	89	2	334	44	7	11	36	1.69
19830434--19831027	299	2.0	293	86	3	845	37	7	8	46	1.63
19830762--19831830	408	2.7	396	87	4	1521	36	8	8	46	1.65
19838104--19838142	14	3.0	13	85	7	53	71	0	10	17	1.12
19838772--19838807	3	12.0	3	100	0	72	66	0	0	33	0.92
19839188--19839218	3	10.3	3	92	0	53	38	0	29	32	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19839182--19839231	12	4.2	12	82	2	57	46	2	22	30	1.63
19850546--19850626	40	2.0	40	90	0	126	34	6	9	49	1.61
19852483--19852510	1	28.0	1	100	0	56	100	0	0	0	0.00
19853717--19853741	13	1.9	13	100	0	50	16	0	0	84	0.63
19857311--19857350	22	2.0	20	85	14	55	20	10	32	37	1.85
19864425--19864467	21	2.0	23	86	9	63	32	4	0	62	1.15
19864930--19864964	17	2.1	17	89	5	54	31	2	0	65	1.07
19864937--19864990	27	2.0	27	82	7	65	33	0	0	66	0.92
19867015--19867057	18	2.3	19	80	4	52	62	2	2	32	1.20
19867203--19867255	26	2.0	26	82	13	65	71	0	1	26	0.96
19871151--19871218	32	2.1	32	89	5	102	54	7	10	27	1.61
19871798--19872022	59	3.8	59	76	9	224	36	12	5	45	1.65
19872039--19872089	9	5.9	9	78	15	54	78	0	5	15	0.93
19872038--19872091	17	3.2	17	82	12	67	79	0	5	14	0.90
19872326--19872369	21	2.0	22	86	4	63	2	45	0	52	1.13
19872332--19872374	16	2.4	18	88	11	63	0	41	0	58	0.98
19872412--19874560	537	4.0	537	94	0	3670	34	17	13	34	1.89
19874501--19874535	9	3.5	10	88	11	54	85	0	0	14	0.59
19874499--19874533	14	2.5	14	90	0	52	85	0	0	14	0.59
19874499--19874562	23	2.8	23	79	9	76	78	0	1	20	0.84
19874556--19874595	11	3.5	12	75	25	50	62	5	5	27	1.37
19874545--19874595	22	2.4	22	87	9	70	66	3	3	25	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19874700--19874769	6	11.7	6	76	10	54	78	1	2	17	0.94
19874700--19874776	11	6.5	11	75	19	66	76	1	3	18	1.01
19876773--19876797	11	2.3	11	100	0	50	24	0	0	76	0.80
19876866--19876951	9	9.1	9	73	21	70	73	1	4	20	1.08
19877243--19877279	13	2.8	13	95	0	65	59	18	5	16	1.55
19881193--19881279	36	2.4	36	90	3	131	56	1	1	41	1.14
19881207--19881292	36	2.5	32	81	15	109	52	2	0	45	1.13
19881207--19881304	36	2.9	32	82	13	92	53	3	0	43	1.16
19881334--19881384	25	2.0	24	88	7	75	49	0	0	50	1.00
19881952--19881991	14	2.8	14	88	3	53	42	0	0	57	0.98
19883762--19883795	17	2.0	17	88	0	50	64	0	0	35	0.94
19887647--19887681	15	2.4	15	85	4	54	80	0	0	20	0.72
19889043--19889115	37	2.0	37	91	0	119	15	21	12	50	1.76
19889608--19889651	3	14.7	3	100	0	88	68	0	0	31	0.90
19889778--19889828	24	2.1	24	82	7	59	66	0	3	29	1.09
19889943--19889986	13	3.4	13	83	0	61	54	20	6	18	1.66
19889975--19890025	19	2.7	19	75	6	59	43	25	9	21	1.83
19898715--19898756	18	2.3	18	84	8	50	76	4	0	19	0.96
19899100--19899140	14	3.0	14	82	3	57	75	0	21	2	0.92
19899180--19899206	14	1.9	14	100	0	54	92	7	0	0	0.38
19899684--19899823	67	2.1	67	95	0	253	39	10	10	40	1.74
19899963--19900325	125	2.9	122	75	15	325	40	12	12	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19899986--19900659	63	10.8	61	70	11	271	42	12	12	33	1.80
19900308--19900457	65	2.4	65	80	5	164	47	10	11	30	1.73
19899949--19900429	250	1.9	251	78	6	528	41	11	13	33	1.80
19900761--19900812	25	2.1	25	81	0	59	50	3	15	30	1.62
19903881--19903939	12	4.8	12	76	10	57	55	20	3	20	1.57
19909743--19909918	65	2.6	65	92	3	289	50	7	12	28	1.68
19909730--19909918	68	2.8	66	91	3	299	51	7	12	28	1.67
19913208--19913296	28	3.2	28	81	0	115	28	8	15	47	1.76
19916619--19916677	31	1.9	31	86	6	84	52	6	8	32	1.58
19918400--19918733	54	6.2	54	75	9	254	48	6	8	36	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160