Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  8  of  160  ( 19195 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2400961--2401005
17
2.8
17
86
10
67
13
11
2
73
1.19
2400963--2401005
16
2.7
16
92
7
70
11
11
2
74
1.17
2404553--2404790
115
2.1
115
91
0
386
33
19
15
31
1.93
2406786--2406819
17
2.1
16
88
5
50
38
11
8
41
1.73
2407017--2407045
11
2.6
11
100
0
58
20
0
27
51
1.47
2407072--2407198
52
2.4
53
89
2
186
43
9
20
26
1.82
2407183--2407219
14
2.4
17
73
26
53
45
5
32
16
1.70
2407189--2407219
14
2.2
14
100
0
62
45
6
29
19
1.75
2407671--2407714
12
3.7
12
96
0
79
20
0
11
68
1.20
2408681--2408740
2
31.5
2
74
15
56
46
1
1
50
1.21
2410299--2410324
2
13.0
2
100
0
52
50
0
0
50
1.00
2410324--2410351
2
14.0
2
100
0
56
50
0
50
0
1.00
2411915--2411955
12
3.5
12
83
6
57
48
9
0
41
1.36
2416345--2416398
23
2.5
20
77
17
54
35
1
1
61
1.18
2416396--2416439
23
1.9
23
85
0
61
50
0
4
45
1.22
2424406--2424514
55
2.0
55
94
0
191
36
12
11
38
1.81
2426340--2426374
17
1.9
19
88
11
56
17
22
20
40
1.92
2429910--2430367
227
2.0
227
96
0
835
28
12
19
38
1.88
2435791--2435823
2
17.0
2
87
6
50
51
3
0
45
1.16
2441884--2441923
19
2.2
19
86
8
57
47
2
7
42
1.45
2445316--2445357
17
2.5
17
88
0
66
23
21
7
47
1.75
2448454--2448483
15
1.9
16
93
6
53
26
10
10
53
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2449458--2449565
21
4.7
24
79
15
120
42
8
12
37
1.72
2449454--2449589
46
3.0
46
86
7
188
41
7
11
39
1.70
2449502--2449584
25
3.5
24
75
12
82
43
6
12
38
1.66
2450058--2450471
44
9.5
43
78
14
325
23
12
19
44
1.84
2450377--2450497
44
2.8
46
73
12
78
24
11
18
45
1.82
2450407--2450484
41
1.9
41
86
0
111
24
10
15
50
1.75
2450901--2450930
16
1.9
15
93
6
51
76
10
13
0
1.01
2451228--2451335
39
2.7
39
81
7
112
21
3
2
72
1.13
2452400--2452447
11
4.5
10
82
7
51
12
8
2
77
1.08
2452400--2452458
11
5.4
11
73
15
50
13
6
1
77
1.03
2452518--2452791
58
4.7
58
83
4
331
44
8
12
35
1.72
2454519--2454859
59
5.8
58
80
10
354
39
12
5
42
1.66
2454521--2454868
117
3.0
114
84
8
432
38
11
5
44
1.64
2456278--2456328
20
2.5
20
83
3
57
76
3
1
17
1.03
2456276--2456327
27
2.0
26
84
3
68
76
3
1
17
1.02
2456936--2457198
60
4.4
60
83
6
311
50
4
11
33
1.59
2462187--2462230
21
2.2
20
87
4
61
47
2
0
50
1.13
2463232--2463295
33
2.0
32
84
9
85
26
3
1
68
1.13
2463306--2463335
14
2.1
14
93
0
51
60
0
0
40
0.97
2463315--2463366
23
2.2
23
78
18
54
50
3
0
46
1.20
2464284--2464310
14
1.9
14
100
0
54
48
0
0
51
1.00
2464275--2464311
8
4.8
8
83
16
51
45
2
0
51
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2473676--2473766
37
2.5
37
100
0
182
38
5
19
36
1.75
2486131--2486159
12
2.4
12
100
0
58
17
17
20
44
1.86
2513919--2513950
2
16.0
2
100
0
64
50
0
0
50
1.00
2523346--2523383
2
19.0
2
94
0
67
0
47
0
52
1.00
2523539--2523574
2
18.5
2
88
5
56
0
55
0
44
0.99
2523574--2523603
2
15.0
2
100
0
60
50
50
0
0
1.00
2527671--2527707
2
18.5
2
100
0
74
0
51
0
48
1.00
2531069--2531137
31
2.2
32
82
10
90
39
10
4
46
1.58
2531408--2531437
15
2.0
15
93
0
51
36
0
0
63
0.95
2531635--2531710
13
6.5
12
70
15
52
60
0
2
36
1.11
2532074--2532130
16
3.4
16
76
11
51
49
0
1
49
1.11
2532454--2532498
21
2.2
21
84
11
58
55
2
2
40
1.24
2544673--2544720
20
2.4
20
82
6
62
41
2
2
54
1.24
2544750--2544783
17
1.9
18
94
5
61
55
8
0
35
1.31
2559327--2559357
2
15.5
2
100
0
62
51
0
48
0
1.00
2565793--2565866
29
2.7
27
78
12
69
44
4
2
48
1.35
2580896--2580955
29
2.0
31
87
6
88
46
1
3
48
1.28
2580909--2580974
29
2.3
29
78
5
71
50
3
3
43
1.33
2589311--2589362
23
2.3
23
79
0
59
53
0
0
46
1.00
2596447--2596481
2
17.5
2
93
0
61
54
0
45
0
0.99
2600307--2600365
6
9.8
6
73
14
50
64
0
1
33
1.04
2602248--2602303
25
2.3
26
84
9
73
46
3
0
50
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2604760--2604814
28
1.9
29
82
10
69
50
0
0
49
1.00
2604763--2604805
18
2.5
17
78
14
52
48
0
0
51
1.00
2604771--2604847
29
2.7
30
78
11
81
49
0
0
50
1.00
2604814--2604865
23
2.2
25
86
6
72
50
0
0
50
1.00
2604805--2604865
24
2.4
26
76
15
65
50
0
0
49
1.00
2604814--2604865
12
4.3
12
78
9
52
50
0
0
50
1.00
2604896--2604936
20
2.0
20
85
0
55
34
0
2
63
1.08
2605154--2605178
2
12.5
2
100
0
50
48
0
0
52
1.00
2610125--2610190
27
2.4
26
76
14
62
18
18
40
22
1.91
2617573--2617608
2
18.0
2
94
0
63
0
2
50
47
1.15
2617608--2617636
2
14.5
2
100
0
58
48
0
51
0
1.00
2623257--2623317
31
1.9
32
86
3
88
44
3
1
50
1.28
2627959--2627989
2
15.5
2
100
0
62
48
0
0
51
1.00
2629679--2629731
23
2.5
21
88
11
81
50
0
0
49
1.00
2629681--2629727
23
2.1
22
96
4
85
53
0
0
46
1.00
2629716--2629767
14
3.6
14
75
10
50
57
0
0
42
0.98
2629719--2629757
16
2.4
16
86
0
51
61
0
0
38
0.96
2629702--2629775
30
2.5
30
84
4
87
55
0
0
44
0.99
2632756--2632813
28
2.0
29
83
12
75
46
1
0
51
1.11
2637076--2637122
22
2.0
24
84
15
64
59
0
0
40
0.97
2645520--2645650
67
2.0
67
92
0
217
46
21
14
17
1.83
2651542--2651572
14
2.1
15
94
5
55
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2651543--2651581
20
1.9
21
89
5
62
41
0
0
58
0.98
2651552--2651588
18
2.1
18
89
0
56
37
0
0
62
0.96
2651962--2652027
31
2.1
31
83
13
82
56
0
0
43
0.99
2651962--2652027
32
2.1
30
83
13
80
56
0
0
43
0.99
2653330--2653354
13
1.9
13
100
0
50
52
0
0
48
1.00
2653586--2653619
18
1.9
17
88
5
50
82
2
2
11
0.89
2654250--2654274
8
3.1
8
100
0
50
40
0
0
60
0.97
2656550--2656589
19
2.1
19
90
0
62
60
10
7
22
1.54
2665047--2665073
2
13.5
2
100
0
54
51
0
0
48
1.00
2670943--2670991
21
2.4
21
71
21
50
42
0
0
57
0.99
2670988--2671036
18
2.8
18
82
17
59
65
0
0
34
0.93
2671060--2671121
6
10.3
6
73
13
56
48
1
1
48
1.21
2671075--2671122
13
3.8
13
81
8
55
50
2
0
47
1.12
2671049--2671117
12
5.7
12
75
14
52
42
2
2
52
1.31
2671872--2671931
28
2.1
28
87
6
84
48
8
0
43
1.33
2683688--2683712
13
1.9
13
100
0
50
40
0
0
60
0.97
2683728--2683760
17
2.1
16
88
11
50
36
0
0
63
0.95
2684394--2684424
3
10.3
3
100
0
62
0
32
32
35
1.58
2690034--2690094
21
3.0
21
85
2
79
55
1
1
40
1.19
2698536--2698560
6
4.2
6
100
0
50
48
0
0
52
1.00
2710505--2710557
27
2.0
27
84
0
70
50
1
9
37
1.46
2712478--2712531
26
2.1
26
100
0
108
31
3
11
53
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2715532--2715592
24
2.5
24
83
0
77
49
0
40
9
1.36
2715576--2715628
3
17.7
3
80
7
63
58
1
37
1
1.20
2715532--2715616
12
7.1
12
76
5
64
51
0
41
7
1.29
2716571--2716624
27
2.0
27
96
0
99
7
31
37
24
1.83
2724524--2724552
2
14.5
2
100
0
58
51
0
0
48
1.00
2729963--2730024
30
2.1
30
100
0
124
33
16
19
30
1.94
2737906--2737986
32
2.6
31
86
3
110
34
9
8
46
1.68
2743280--2743311
3
10.7
3
100
0
64
68
0
0
31
0.90
2743310--2743362
3
17.7
3
88
0
61
58
32
9
0
1.30
2743312--2743355
15
2.9
15
89
0
70
56
34
9
0
1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160