genome.fa.s334.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  151  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29718988--29719017	4	7.8	4	92	7	53	23	23	53	0	1.46
29721056--29721106	24	2.1	24	100	0	102	39	21	15	23	1.92
29724356--29724391	2	18.0	2	94	0	63	47	0	2	50	1.15
29731313--29731397	45	1.9	45	90	2	136	45	20	9	24	1.80
29749401--29749439	2	19.5	2	100	0	78	51	0	48	0	1.00
29757573--29757657	40	2.2	40	89	6	129	15	0	61	23	1.34
29757891--29757928	20	2.0	20	89	5	60	34	0	5	60	1.19
29758154--29758202	25	1.9	26	91	4	82	46	2	10	40	1.49
29761988--29762112	18	6.9	18	73	13	105	32	34	4	28	1.78
29761994--29762034	21	2.0	21	95	0	73	26	39	2	31	1.70
29762016--29762113	33	2.9	33	83	4	124	36	31	5	26	1.78
29762832--29762862	2	15.5	2	100	0	62	51	0	48	0	1.00
29769370--29769519	75	2.0	74	89	1	228	36	15	20	28	1.93
29805753--29805779	2	13.5	2	100	0	54	48	0	0	51	1.00
29807897--29807958	19	3.3	18	80	8	61	62	3	0	33	1.11
29807924--29807966	11	3.8	11	78	6	50	67	4	0	27	1.10
29818209--29818242	11	3.1	11	91	0	59	0	14	0	85	0.60
29828058--29828101	24	1.9	24	86	9	65	27	13	6	52	1.66
29832641--29832683	21	2.1	20	86	4	59	62	2	0	34	1.08
29832641--29832694	21	2.6	21	82	2	56	57	5	1	35	1.33
29834847--29835009	83	2.0	82	87	1	236	26	16	16	40	1.89
29839915--29839954	18	2.2	18	90	0	62	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29839905--29839972	30	2.3	31	80	12	79	41	0	0	58	0.98
29839937--29839980	23	1.9	23	81	9	54	45	0	0	54	0.99
29840051--29840109	27	2.2	27	81	6	66	54	1	1	42	1.20
29842559--29842611	24	2.2	24	86	0	70	5	3	35	54	1.42
29879036--29879080	24	1.9	24	86	4	65	48	4	2	44	1.35
29881020--29881053	16	2.1	16	88	0	50	67	5	20	5	1.33
29883562--29883634	36	2.0	36	100	0	146	38	19	8	34	1.81
29887865--29887906	18	2.4	18	80	11	52	40	0	9	50	1.35
29887864--29887928	8	7.5	8	75	21	51	40	0	9	50	1.34
29887856--29887932	27	2.7	29	80	7	79	41	0	7	50	1.31
29888071--29888122	13	3.7	13	76	16	50	36	0	5	57	1.23
29889148--29889255	54	2.0	54	98	0	207	35	23	9	32	1.86
29907607--29907632	13	2.0	13	100	0	52	46	0	0	53	1.00
29930665--29930940	136	2.0	136	93	0	471	43	14	11	29	1.82
29930991--29931048	30	1.9	30	85	0	80	37	18	13	29	1.90
29933277--29933320	20	2.2	20	84	8	54	47	0	0	52	1.00
29940258--29940300	17	2.4	18	85	11	54	34	0	4	60	1.17
29940673--29940716	23	1.9	23	90	9	72	68	2	0	29	1.02
29941073--29941132	20	3.0	20	85	9	86	48	1	0	50	1.11
29941717--29941783	20	3.2	21	67	21	52	49	11	4	34	1.60
29942337--29942377	19	2.3	19	91	8	68	34	0	0	65	0.93
29949121--29949172	19	2.7	19	78	0	59	51	0	1	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29953750--29953791	16	2.7	15	80	16	50	0	11	2	85	0.68
29953752--29953795	21	2.0	21	86	8	61	0	13	2	84	0.73
29961742--29961772	16	1.9	16	100	0	62	80	0	0	19	0.71
29962042--29962102	31	2.0	30	87	3	86	40	8	1	49	1.42
29962372--29962414	20	2.2	19	88	12	61	62	0	2	34	1.08
29964431--29964576	52	2.8	51	84	8	161	25	22	8	43	1.80
29964601--29964642	11	3.8	11	93	0	75	50	28	0	21	1.49
29964601--29964643	22	2.0	22	100	0	86	48	27	0	23	1.51
29964880--29964984	25	4.2	25	75	2	95	20	31	7	40	1.81
29964978--29965062	31	2.8	30	85	5	125	24	24	21	29	1.99
29965546--29965702	52	3.0	51	84	9	167	26	23	8	42	1.82
29965727--29965768	11	3.8	11	93	0	75	50	28	0	21	1.49
29965727--29965769	22	2.0	22	100	0	86	48	27	0	23	1.51
29973099--29973128	2	15.0	2	100	0	60	50	0	0	50	1.00
29973160--29973202	21	2.0	22	90	4	70	34	4	23	37	1.76
29975471--29975504	2	17.0	2	100	0	68	50	0	0	50	1.00
29979157--29979227	21	3.3	21	65	18	56	29	7	1	61	1.30
29986685--29986731	15	3.0	15	75	19	51	72	6	2	19	1.17
29986698--29986765	13	5.4	13	68	19	54	73	5	2	17	1.16
29987519--29987587	35	2.0	35	82	5	86	43	8	7	40	1.63
29987914--29988040	64	1.9	66	84	4	168	46	14	3	35	1.63
29988046--29988136	20	4.3	20	67	20	60	43	14	6	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29987976--29988085	46	2.4	45	85	7	152	44	14	3	37	1.63
29987870--29988188	110	2.9	109	83	5	351	43	13	6	36	1.70
29988874--29988900	9	3.0	9	100	0	54	22	0	0	77	0.76
29989325--29989354	4	7.5	4	100	0	60	23	0	0	76	0.78
29989402--29989451	21	2.5	20	78	12	57	68	0	0	32	0.90
29989403--29989451	19	2.5	20	87	6	66	67	0	0	32	0.91
29989570--29989696	55	2.3	55	86	6	177	57	4	8	29	1.49
29991390--29992170	86	9.1	86	72	10	373	24	14	12	48	1.79
29991481--29992167	88	7.9	86	72	9	333	23	14	12	49	1.78
29991456--29992010	176	3.2	170	77	9	487	24	14	12	49	1.77
29993147--29993377	60	3.8	59	85	10	258	45	5	9	39	1.59
29993562--29993602	12	3.3	12	83	6	55	48	0	0	51	1.00
29993516--29993648	71	1.9	71	84	3	178	47	2	9	40	1.49
29993525--29993757	122	1.9	121	82	5	294	44	5	10	39	1.61
29995290--29995323	15	2.3	15	94	0	59	11	11	2	73	1.20
29998641--29998692	25	2.1	24	85	3	68	32	5	1	59	1.32
30000560--30000586	10	2.7	10	100	0	54	74	0	18	7	1.05
30002585--30002629	10	4.4	10	88	2	54	24	8	8	57	1.57
30002585--30002641	20	2.8	20	83	5	69	26	7	8	57	1.54
30003424--30003465	19	2.2	20	91	4	68	50	2	0	47	1.14
30003559--30003619	29	2.1	29	87	0	86	49	3	1	45	1.28
30003796--30003863	29	2.4	28	80	5	82	45	1	0	52	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30003961--30004010	21	2.3	23	80	13	61	48	0	2	50	1.12
30009620--30009668	6	8.8	6	80	10	52	30	0	0	69	0.89
30009623--30009668	17	2.8	16	83	6	65	32	0	0	67	0.91
30011652--30011678	2	13.5	2	100	0	54	51	0	0	48	1.00
30015257--30015355	50	2.0	49	86	2	135	21	9	12	57	1.62
30021562--30021586	11	2.3	11	100	0	50	16	16	0	68	1.22
30050121--30050158	12	3.2	12	92	0	58	21	31	34	13	1.91
30058134--30058273	6	23.8	6	74	17	64	20	7	2	70	1.23
30058138--30058248	17	6.6	17	69	20	65	20	4	2	72	1.15
30058116--30058254	11	11.7	11	73	19	84	20	5	2	71	1.18
30058206--30058263	22	2.6	23	88	5	91	17	6	1	74	1.12
30059353--30059384	15	2.0	17	88	11	50	40	3	6	50	1.43
30059717--30059758	3	14.0	3	100	0	84	66	0	0	33	0.92
30059867--30059914	21	2.3	20	79	10	51	41	6	8	43	1.60
30065876--30065905	2	15.0	2	100	0	60	50	0	0	50	1.00
30078582--30078620	14	2.7	15	88	8	62	41	7	28	23	1.82
30090554--30090629	34	2.2	33	78	17	84	44	0	1	53	1.08
30090563--30090638	29	2.8	25	79	16	80	38	0	1	60	1.05
30092382--30092435	27	2.0	28	85	3	74	48	1	1	48	1.23
30092723--30092767	23	1.9	22	82	13	54	31	0	4	64	1.13
30092797--30092839	18	2.4	18	88	3	61	16	9	4	69	1.31
30104659--30104688	13	2.2	14	94	5	53	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30104657--30104690	14	2.4	15	85	14	54	41	0	0	58	0.98
30106015--30106068	23	2.2	25	90	6	85	55	0	1	42	1.10
30110261--30110294	2	17.0	2	100	0	68	50	0	0	50	1.00
30112408--30112451	17	2.4	19	77	11	56	31	2	0	65	1.05
30155262--30155347	44	2.0	44	100	0	172	20	25	33	19	1.97
30156001--30156044	21	2.0	22	82	4	54	38	15	18	27	1.91
30159625--30159675	21	2.4	21	83	6	59	41	15	19	23	1.90
30166888--30166949	20	3.1	20	79	11	65	38	0	0	61	0.96
30166932--30166985	22	2.3	25	87	9	78	46	0	0	53	1.00
30190028--30190123	51	1.9	51	87	4	142	38	8	12	40	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160