genome.fa.s334.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  127  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23686799--23686828	12	2.4	13	88	11	53	53	26	0	20	1.46
23692434--23692467	11	2.9	11	91	8	50	23	0	0	76	0.79
23693372--23693409	18	2.1	18	90	0	58	28	31	10	28	1.90
23714127--23714444	149	2.1	147	83	5	381	36	19	14	30	1.91
23714136--23714439	37	8.2	37	81	5	328	35	20	14	29	1.92
23714620--23714669	18	2.8	18	87	0	64	40	12	22	26	1.88
23715198--23715253	29	1.9	29	85	0	76	48	17	19	14	1.81
23715239--23715320	37	2.2	36	87	10	114	58	10	12	18	1.62
23715333--23715385	23	2.4	21	79	14	61	22	13	24	39	1.90
23715410--23715481	28	2.6	28	80	4	74	38	13	19	27	1.90
23715706--23715780	35	2.1	35	82	4	89	32	20	17	30	1.95
23715752--23715829	33	2.4	32	81	10	95	29	17	16	35	1.93
23715840--23715878	20	2.0	20	100	0	78	30	15	17	35	1.91
23716265--23716371	34	3.2	34	76	7	119	35	14	14	35	1.87
23716356--23716440	34	2.6	32	80	10	93	31	14	18	35	1.91
23717645--23717689	15	2.9	15	83	6	54	2	20	0	77	0.87
23717685--23717722	20	2.0	18	90	10	58	5	10	5	78	1.06
23723311--23723370	3	20.0	3	92	0	102	31	1	1	65	1.13
23727712--23727744	15	2.1	16	88	5	50	48	3	3	45	1.33
23730511--23730552	16	2.5	17	77	14	52	47	7	0	45	1.30
23737984--23738038	3	18.3	3	100	0	110	32	0	0	67	0.91
23738277--23738314	10	4.0	10	86	13	53	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23741296--23741362	3	22.3	3	100	0	134	32	0	0	67	0.91
23741909--23741950	2	21.0	2	100	0	84	50	0	0	50	1.00
23742913--23742966	21	2.6	21	79	2	65	1	12	9	75	1.11
23743404--23743881	145	3.3	145	78	6	457	41	11	11	35	1.79
23753005--23753040	2	18.0	2	100	0	72	50	0	0	50	1.00
23754781--23754805	11	2.3	11	100	0	50	44	0	0	56	0.99
23755073--23755122	22	2.4	19	80	12	55	32	0	10	58	1.31
23754809--23755156	177	2.0	177	85	4	468	41	6	7	44	1.58
23755959--23756380	210	2.0	210	94	0	738	46	7	6	39	1.58
23760617--23760658	16	2.7	16	88	3	59	14	26	38	21	1.91
23769465--23769502	2	19.0	2	94	0	67	52	0	47	0	1.00
23773144--23773236	46	2.0	46	93	0	159	36	6	9	47	1.62
23777560--23777718	79	2.0	79	86	4	221	40	5	9	44	1.59
23777693--23777759	21	3.1	21	78	2	71	28	4	11	55	1.56
23778172--23778297	22	5.8	22	73	10	98	38	7	7	46	1.63
23778321--23778826	22	22.9	22	69	10	120	37	9	5	47	1.60
23778378--23778591	66	3.3	66	74	10	163	37	10	4	47	1.59
23778321--23778826	44	11.5	44	70	11	178	37	9	5	47	1.60
23779081--23779312	22	10.8	22	71	11	95	40	9	6	43	1.63
23779181--23779220	21	1.9	21	89	0	62	40	5	5	50	1.46
23779305--23779685	22	17.5	22	65	10	113	38	9	3	48	1.53
23779519--23779620	43	2.3	44	81	1	116	39	8	4	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23779730--23779829	44	2.3	44	84	1	130	42	7	5	46	1.53
23779730--23779842	44	2.6	44	84	2	120	41	6	7	45	1.56
23780642--23780694	26	2.0	26	82	7	63	54	7	1	35	1.40
23781805--23781843	16	2.4	16	87	8	53	64	2	2	30	1.21
23787331--23787434	29	3.7	26	75	15	93	73	3	1	21	1.10
23787364--23787416	19	2.7	19	91	8	81	73	3	0	22	0.99
23787331--23787446	14	8.2	14	69	8	65	72	3	1	22	1.09
23787355--23787423	7	11.3	6	77	13	54	75	2	0	21	0.93
23787336--23787446	55	2.0	54	83	13	138	72	3	1	22	1.10
23787331--23787434	5	19.8	5	73	19	63	73	3	1	21	1.10
23788256--23788369	3	38.0	3	90	0	183	64	1	1	31	1.13
23788759--23788907	55	2.7	56	78	8	137	42	12	19	24	1.86
23789325--23789382	17	3.3	17	81	15	73	36	12	13	37	1.82
23789325--23789383	18	3.3	18	81	13	77	35	11	13	38	1.82
23795488--23795537	26	1.9	26	84	8	66	74	0	0	26	0.83
23796340--23796526	3	64.0	3	78	9	100	63	9	2	24	1.37
23800730--23801119	54	6.8	58	72	15	203	49	6	8	35	1.59
23800773--23800996	54	4.1	54	79	7	229	50	5	8	35	1.56
23800998--23801024	14	1.9	14	100	0	54	55	0	0	44	0.99
23801146--23801197	23	2.3	22	87	9	70	51	9	1	36	1.46
23806369--23806486	46	2.5	47	80	4	132	37	5	14	43	1.67
23806403--23806497	46	2.1	46	82	4	111	40	7	13	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23806681--23806767	18	4.9	18	78	2	77	44	10	12	32	1.76
23806665--23806741	35	2.2	36	85	2	102	45	10	10	33	1.72
23806718--23806774	18	3.2	18	80	9	62	49	12	12	26	1.75
23807571--23807658	39	2.2	40	80	9	101	47	26	11	14	1.78
23810314--23810384	21	3.4	21	100	0	142	28	19	28	23	1.99
23816631--23816672	21	2.0	21	100	0	84	61	14	0	23	1.32
23818246--23818631	60	6.7	60	72	16	234	50	5	8	35	1.56
23818296--23818467	55	3.1	56	80	9	183	50	5	8	34	1.57
23818306--23818524	115	1.9	113	82	6	264	49	5	10	34	1.61
23818246--23818575	173	1.9	172	79	11	372	50	5	8	35	1.57
23818503--23818641	57	2.5	55	81	10	149	48	7	6	37	1.56
23822568--23822621	23	2.5	21	77	11	54	42	5	5	46	1.50
23822579--23822623	23	2.0	23	90	0	72	44	6	4	44	1.50
23824717--23824799	28	3.0	26	80	16	78	51	1	0	46	1.08
23834799--23834823	13	1.9	13	100	0	50	8	0	28	64	1.22
23836018--23836077	31	1.9	32	86	3	86	21	15	6	56	1.61
23842056--23842080	12	2.1	12	100	0	50	32	8	28	32	1.86
23847711--23847832	61	2.0	61	100	0	244	34	13	18	34	1.89
23848370--23848394	11	2.3	11	100	0	50	8	8	0	84	0.79
23862007--23862047	17	2.4	18	80	19	52	14	4	4	75	1.14
23866621--23866691	35	2.0	35	94	0	124	16	19	9	53	1.71
23870129--23870298	90	1.9	90	91	0	277	17	21	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23870137--23870394	93	2.8	90	80	4	257	19	21	22	36	1.95
23872139--23872176	19	2.0	19	89	0	58	36	10	5	47	1.61
23872356--23872398	21	2.0	22	90	4	70	58	0	0	41	0.98
23873578--23873618	6	6.5	6	83	10	55	19	2	0	78	0.87
23873578--23873618	13	3.2	12	86	10	55	19	2	0	78	0.87
23873625--23873666	20	2.0	21	82	13	52	26	4	2	66	1.23
23876284--23876372	25	3.5	25	78	6	72	38	2	15	43	1.59
23876257--23876496	86	2.8	84	78	6	214	37	2	17	42	1.64
23877745--23877800	21	2.7	21	86	5	78	46	0	21	32	1.52
23878670--23878705	18	1.9	19	94	5	65	77	5	8	8	1.11
23879029--23879055	14	1.9	14	100	0	54	88	3	7	0	0.61
23886353--23886420	34	2.0	34	100	0	136	38	20	14	26	1.91
23889990--23890083	46	2.0	46	97	0	179	35	27	8	28	1.86
23897189--23897235	24	1.9	24	86	4	67	55	2	2	40	1.24
23897883--23897937	25	2.1	27	83	6	69	27	1	3	67	1.17
23901727--23901765	2	19.5	2	89	0	60	48	5	0	46	1.24
23902205--23902253	19	2.4	20	80	19	57	46	2	12	38	1.53
23913683--23913742	30	2.0	30	87	3	86	38	0	20	41	1.52
23913735--23913826	30	3.1	31	89	6	120	39	9	19	31	1.84
23917865--23917894	16	1.9	15	93	6	51	16	6	0	76	0.99
23936463--23936498	18	2.0	18	94	0	63	25	27	25	22	2.00
23939516--23939556	20	2.0	20	86	9	57	63	0	4	31	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23940621--23940721	49	2.0	50	92	1	168	38	23	7	29	1.83
23945733--23945791	27	2.2	27	100	0	118	42	40	3	13	1.61
23948254--23948306	21	2.6	21	82	14	74	43	15	3	37	1.64
23948571--23948769	103	1.9	103	90	0	317	34	24	13	27	1.93
23950554--23950579	2	13.0	2	100	0	52	50	0	0	50	1.00
23952571--23952608	18	2.1	18	90	0	58	31	18	13	36	1.89
23955372--23955411	15	2.7	15	88	7	55	30	5	12	52	1.60
23956575--23956625	24	2.1	24	96	0	93	19	0	9	70	1.14
23958650--23958704	3	18.7	3	92	3	94	29	0	1	69	0.99
23959865--23960339	118	3.9	118	87	5	605	50	5	6	36	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160