genome.fa.s334.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  45  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10053389--10053522	18	7.4	18	76	8	105	42	15	15	26	1.87
10053741--10053776	17	2.2	17	90	5	56	41	8	11	38	1.71
10054120--10054456	109	3.1	107	81	3	374	36	15	9	38	1.80
10054466--10054510	14	3.2	14	83	0	63	44	8	4	42	1.56
10055738--10055786	8	6.1	8	84	13	57	14	10	0	75	1.04
10055741--10055786	16	2.8	16	90	9	67	13	8	0	78	0.97
10055740--10055786	24	2.0	24	91	4	78	14	8	0	76	1.01
10055740--10055805	8	8.0	8	77	9	53	16	6	0	77	0.96
10060492--10060527	17	2.0	17	89	10	54	16	8	5	69	1.33
10061620--10061692	37	2.0	37	91	0	119	43	0	6	49	1.29
10063870--10063896	10	2.7	10	100	0	54	62	0	0	37	0.95
10064186--10064545	178	2.0	178	91	2	589	26	13	10	49	1.74
10064982--10065044	22	3.0	21	79	9	67	44	12	9	33	1.75
10064841--10065294	226	2.0	226	95	0	811	40	15	9	33	1.81
10065208--10065270	22	3.0	21	76	4	65	46	12	7	33	1.71
10065299--10065341	18	2.4	18	96	0	77	48	11	16	23	1.78
10065417--10065476	19	3.0	20	78	9	61	53	13	10	23	1.69
10065446--10065487	20	2.1	21	86	8	61	47	9	16	26	1.77
10065551--10065729	98	1.8	98	83	1	241	49	13	7	29	1.70
10065663--10065754	23	3.9	23	70	11	62	48	15	6	29	1.69
10065710--10066159	22	20.3	22	66	11	125	42	14	8	34	1.76
10065841--10065999	45	3.5	45	77	7	169	45	13	6	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10065660--10066024	44	8.1	44	76	9	256	44	14	8	33	1.75
10066049--10066246	44	4.5	43	76	5	180	42	13	8	35	1.74
10065940--10066145	109	1.9	109	83	6	265	40	14	9	36	1.77
10066107--10066271	89	1.8	89	83	10	219	44	12	7	35	1.72
10066221--10066271	25	2.0	25	88	7	77	50	11	3	33	1.57
10066602--10066718	59	2.0	59	96	0	216	37	20	9	32	1.85
10067742--10067801	31	1.9	31	86	6	86	8	16	1	73	1.16
10072168--10072279	37	3.1	37	84	8	151	55	6	12	25	1.60
10082139--10082176	15	2.5	16	79	12	53	44	5	7	42	1.56
10083921--10083965	23	2.0	23	82	8	56	48	6	6	37	1.56
10089156--10089204	14	3.5	14	81	8	55	38	0	0	61	0.96
10089156--10089195	15	2.7	15	88	3	55	37	0	0	62	0.95
10093153--10093201	23	2.1	23	81	7	55	42	4	10	42	1.57
10093655--10093723	35	1.9	35	86	13	97	49	1	2	46	1.25
10093652--10093742	31	2.7	33	81	11	96	46	1	2	50	1.20
10093652--10093749	33	2.9	31	80	13	81	46	1	2	50	1.19
10094390--10094424	18	1.9	18	88	11	54	62	0	0	37	0.95
10094666--10094766	34	3.0	33	64	9	87	46	6	6	39	1.58
10095960--10095995	2	18.0	2	88	0	54	50	2	0	47	1.15
10099062--10099099	12	2.9	13	88	7	51	2	44	5	47	1.39
10104605--10104636	11	3.0	11	95	4	57	93	0	6	0	0.34
10104661--10104685	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10106271--10106321	18	2.9	16	78	16	57	27	5	0	66	1.14
10106502--10106544	21	2.0	22	86	13	63	30	2	2	65	1.18
10106631--10106671	20	2.0	20	86	13	57	75	2	4	17	1.08
10107247--10107292	20	2.4	19	85	3	56	13	10	6	69	1.35
10107661--10107695	9	3.9	9	84	0	52	17	0	0	82	0.66
10107664--10107702	18	2.2	18	85	0	51	15	0	5	79	0.90
10107665--10107755	11	7.7	12	67	21	50	18	2	5	73	1.13
10109642--10109690	2	24.5	2	91	0	80	53	2	0	44	1.12
10114470--10114525	28	1.9	30	82	7	71	30	1	5	62	1.28
10115113--10115138	11	2.4	11	100	0	52	7	7	0	84	0.77
10115272--10115330	21	2.8	21	86	0	73	62	3	0	33	1.12
10116273--10116327	10	5.4	11	75	14	55	20	0	5	74	1.01
10116282--10116327	19	2.3	20	85	10	60	21	0	4	73	1.00
10116420--10116488	28	2.5	28	85	4	86	37	20	17	24	1.93
10127031--10127092	28	2.2	28	79	0	70	22	19	20	37	1.95
10129980--10130052	10	7.2	10	76	13	69	82	5	1	10	0.90
10129967--10130052	25	3.4	25	80	6	84	80	6	1	11	0.96
10129972--10130032	20	3.3	18	84	8	70	80	6	0	13	0.90
10129967--10130044	8	9.2	8	71	19	52	79	6	1	12	0.98
10129901--10130043	7	18.9	7	68	19	58	74	4	1	19	1.05
10129953--10130046	15	6.6	14	75	15	68	78	6	2	12	1.02
10143289--10143544	49	5.3	49	78	7	247	29	11	22	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10143296--10143488	47	4.1	47	80	11	198	29	11	22	37	1.89
10143324--10143540	96	2.3	96	81	4	242	29	12	22	35	1.91
10143818--10143905	13	5.9	15	76	16	58	77	9	1	12	1.05
10143818--10143877	8	7.5	8	77	7	59	73	10	1	15	1.17
10143830--10143905	8	9.9	8	73	13	52	78	7	0	13	0.94
10143835--10143905	27	2.8	26	83	8	83	80	7	0	12	0.90
10143851--10143909	14	4.2	14	82	10	59	83	6	0	10	0.82
10144862--10144901	21	1.9	21	84	0	53	27	2	0	70	1.01
10154359--10154396	17	2.2	17	86	9	51	26	0	0	73	0.83
10155965--10156115	7	19.6	8	84	9	158	15	0	12	71	1.18
10155965--10156114	15	9.8	15	83	10	171	15	0	12	71	1.19
10156181--10156274	28	3.4	28	83	0	107	38	18	20	23	1.93
10156593--10156948	95	3.7	95	80	4	376	37	19	13	29	1.90
10156544--10156951	48	8.5	47	79	5	340	38	19	12	29	1.89
10156814--10156949	49	2.8	50	84	4	170	38	21	15	24	1.92
10157756--10157785	8	3.8	8	95	0	51	10	0	3	86	0.67
10169499--10169538	19	2.1	19	85	0	53	20	25	25	30	1.99
10170394--10170439	8	5.6	8	80	14	58	13	0	10	76	1.03
10170395--10170463	27	2.7	25	82	10	95	15	0	10	73	1.08
10170393--10170439	17	2.8	17	81	15	62	12	0	10	76	1.02
10172728--10172756	15	1.9	15	100	0	58	82	10	0	6	0.83
10173544--10173865	99	3.3	99	84	5	393	26	11	21	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10173538--10173834	49	6.1	48	82	5	344	27	11	22	38	1.89
10174242--10174294	8	6.6	8	82	6	63	75	3	1	18	1.05
10175932--10175976	21	2.1	21	84	8	56	31	0	0	68	0.89
10176496--10176753	130	2.0	130	97	0	489	41	10	16	31	1.82
10177797--10177893	46	2.1	46	81	7	108	49	3	3	44	1.33
10178622--10178680	25	2.4	25	80	8	68	74	13	1	10	1.14
10180149--10180608	59	7.7	57	86	10	584	33	13	8	45	1.73
10180300--10180338	21	1.9	20	84	5	51	25	2	10	61	1.41
10180149--10180614	126	3.9	117	87	8	663	33	13	8	44	1.73
10180685--10180752	12	5.9	11	74	14	57	80	5	1	11	0.94
10181566--10181733	62	2.6	61	81	13	171	65	4	2	26	1.27
10181652--10181754	16	6.6	15	68	18	59	65	7	0	27	1.20
10183591--10183646	29	1.9	29	85	7	78	75	17	0	7	1.03
10195429--10195455	13	2.1	13	100	0	54	29	40	22	7	1.81
10197621--10197653	2	16.5	2	100	0	66	51	0	0	48	1.00
10207489--10207514	3	8.7	3	100	0	52	34	0	0	65	0.93
10207978--10208025	20	2.4	20	85	0	69	22	10	14	52	1.72
10208340--10208399	25	2.4	24	81	8	66	16	1	10	71	1.21
10208355--10208399	12	3.8	12	85	8	56	15	0	13	71	1.15
10208367--10208403	12	3.0	13	88	11	60	16	0	13	70	1.17
10208875--10209079	94	2.2	94	85	7	281	44	6	11	38	1.66
10210256--10210303	20	2.5	19	83	6	62	27	6	0	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10210492--10210539	13	3.5	13	79	17	53	27	0	2	70	0.98
10211638--10211689	19	2.6	20	80	20	72	13	0	13	73	1.11
10211638--10211706	28	2.5	26	80	17	77	13	1	13	72	1.19
10211675--10211715	16	2.6	16	96	0	73	12	2	12	73	1.20
10211638--10211725	9	9.9	9	71	21	62	12	1	12	73	1.15
10211651--10211721	16	4.2	16	83	7	63	12	1	12	73	1.17
10223100--10223177	40	2.0	40	94	0	138	26	14	19	39	1.89
10223280--10223521	33	6.8	35	75	14	144	26	13	18	41	1.87
10223280--10223486	105	2.0	105	86	3	292	27	14	18	40	1.89
10223418--10223537	38	3.1	38	92	1	186	26	10	18	45	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160