genome.fa.s334.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  87  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16636350--16636989	341	1.9	337	89	2	996	21	24	29	24	1.99
16637465--16637517	26	2.0	26	96	0	97	26	20	24	28	1.99
16638197--16638249	26	2.0	26	100	0	106	26	20	26	26	1.99
16638223--16639979	863	2.0	861	87	2	2564	25	24	24	25	2.00
16641542--16641591	26	1.9	26	100	0	100	28	16	28	28	1.97
16642408--16642458	26	2.0	26	92	7	86	31	19	23	25	1.98
16643291--16643343	26	2.0	26	92	0	88	28	18	24	28	1.98
16639925--16646051	883	7.0	888	84	4	7688	26	23	23	26	2.00
16644180--16644232	26	2.0	26	96	0	97	28	20	24	26	1.99
16645043--16645096	26	2.1	26	96	0	99	25	18	25	29	1.98
16645926--16645978	26	2.0	26	92	0	88	30	20	22	26	1.98
16647512--16647564	26	2.0	26	96	0	97	28	20	24	26	1.99
16649258--16649310	26	2.0	26	96	0	97	26	18	26	28	1.98
16646649--16660833	889	16.1	882	85	4	17787	25	24	24	26	2.00
16650999--16651051	26	2.0	26	96	0	97	26	18	26	28	1.98
16651891--16651941	26	2.0	26	100	0	102	27	19	27	25	1.99
16653664--16653716	26	2.0	26	92	0	88	28	20	20	30	1.98
16655419--16655471	26	2.0	26	89	7	81	26	15	28	30	1.96
16656305--16656355	26	2.0	26	92	0	84	29	17	25	27	1.98
16657191--16657243	26	2.0	26	92	0	88	28	18	26	26	1.98
16658930--16658980	26	2.0	26	96	0	93	27	17	25	29	1.98
16659818--16659870	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16660708--16660760	26	2.0	26	96	0	97	26	18	26	28	1.98
16660843--16664243	889	3.9	862	85	3	4407	25	23	24	26	2.00
16662410--16662462	26	2.0	26	92	0	88	30	20	22	26	1.98
16663299--16663351	26	2.0	26	92	0	88	24	18	28	28	1.98
16664872--16664924	26	2.0	26	88	0	79	26	18	26	28	1.98
16665735--16665787	26	2.0	26	92	0	88	26	16	26	30	1.97
16664184--16666833	863	3.0	862	83	6	3230	25	23	24	26	2.00
16666601--16667001	185	2.2	185	83	3	520	23	28	25	21	1.99
16667652--16667704	26	2.0	26	88	0	79	28	20	24	26	1.99
16668541--16668593	26	2.0	26	92	0	88	28	22	24	24	2.00
16667023--16681816	889	16.7	889	87	2	20031	25	24	24	25	2.00
16670307--16670359	26	2.0	26	85	0	70	28	18	24	28	1.98
16671195--16671247	26	2.0	26	92	0	88	26	16	28	28	1.97
16672082--16672132	26	2.0	26	92	0	84	23	21	23	31	1.98
16672974--16673026	26	2.0	26	88	0	79	28	22	20	28	1.99
16674752--16674804	26	2.0	26	92	0	88	26	22	24	26	2.00
16675642--16675692	26	2.0	26	88	0	75	33	15	21	29	1.94
16676531--16676583	26	2.0	26	92	0	88	30	20	22	26	1.98
16678279--16678331	26	2.0	26	100	0	106	26	20	26	26	1.99
16680881--16680959	26	3.0	26	100	0	158	26	20	26	26	1.99
16682801--16682863	16	3.9	16	77	8	65	19	4	31	44	1.71
16682806--16682874	33	2.1	33	86	5	95	15	2	31	49	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16684024--16684077	23	2.5	21	80	13	65	1	1	12	83	0.81
16684032--16684076	17	2.6	17	92	3	72	0	2	15	82	0.77
16684241--16684326	24	3.5	24	88	1	118	16	5	45	32	1.71
16684370--16684406	14	2.7	13	91	8	56	0	0	13	86	0.57
16684364--16684411	15	3.1	15	88	11	78	0	0	14	85	0.60
16684582--16685066	49	9.9	49	85	6	608	36	26	11	26	1.90
16684582--16685066	148	3.3	148	86	6	682	36	26	11	26	1.90
16687045--16687097	26	2.0	26	89	7	81	30	18	22	28	1.98
16687919--16687968	26	1.9	26	95	0	91	30	20	28	22	1.98
16688803--16688852	26	1.9	26	87	0	73	28	20	26	26	1.99
16687123--16689004	884	2.1	891	86	3	2657	25	24	24	25	2.00
16688776--16689190	185	2.2	185	86	1	573	21	27	28	21	1.99
16690142--16690194	26	2.0	26	96	0	97	28	20	24	26	1.99
16689714--16704148	889	16.4	889	86	3	18520	25	23	24	25	2.00
16691914--16691966	26	2.0	26	100	0	106	26	16	26	30	1.97
16692796--16692848	26	2.0	26	88	0	79	28	16	24	30	1.97
16693684--16693736	26	2.0	26	89	7	81	26	16	24	32	1.97
16695459--16695511	26	2.0	26	100	0	106	26	20	26	26	1.99
16696349--16696401	26	2.0	26	89	7	81	30	22	22	24	1.99
16697230--16697282	26	2.0	26	96	0	97	26	18	26	28	1.98
16698116--16698167	26	2.0	26	92	0	86	28	17	25	28	1.97
16700702--16700757	26	2.2	26	90	0	85	32	19	19	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16701585--16701637	26	2.0	26	92	0	88	26	16	26	30	1.97
16702460--16702515	26	2.2	26	83	0	67	32	14	23	30	1.94
16704173--16704224	25	2.0	26	88	3	79	28	19	23	28	1.98
16705929--16705981	26	2.0	26	88	0	79	26	20	24	28	1.99
16706797--16706846	26	1.9	26	91	0	82	32	22	22	24	1.98
16708562--16708614	26	2.0	26	96	0	97	26	18	26	28	1.98
16704159--16718219	887	15.9	890	86	3	18112	25	24	24	25	2.00
16714749--16714801	26	2.0	26	92	0	88	26	16	26	30	1.97
16715634--16715686	26	2.0	26	96	0	97	26	18	28	26	1.98
16716522--16716574	26	2.0	26	92	0	88	28	18	24	28	1.98
16716944--16716993	26	1.9	26	84	8	66	28	8	6	58	1.51
16720001--16720053	26	2.0	26	88	0	79	30	20	22	26	1.98
16718222--16726161	880	9.0	888	85	4	10330	25	23	24	25	2.00
16721751--16721803	26	2.0	26	88	0	79	28	16	24	30	1.97
16723501--16723553	26	2.0	26	89	7	81	26	18	24	30	1.98
16724378--16724430	26	2.0	26	88	0	79	26	20	24	28	1.99
16726180--16726205	8	3.2	8	100	0	52	11	26	61	0	1.30
16725405--16727500	712	3.0	709	92	1	3397	25	22	23	28	1.99
16727539--16727591	26	2.0	26	92	0	88	30	20	22	26	1.98
16727565--16727930	158	2.3	159	84	5	456	21	28	29	20	1.98
16728587--16728639	26	2.0	26	96	0	97	28	20	24	26	1.99
16727723--16741338	887	15.4	879	85	4	16372	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16730360--16730412	26	2.0	26	92	0	88	28	18	26	26	1.98
16732114--16732164	26	2.0	26	92	0	84	25	21	27	25	1.99
16732995--16733047	26	2.0	26	92	0	88	28	18	26	26	1.98
16735624--16735672	25	2.0	25	91	0	80	32	18	24	24	1.97
16736510--16736562	26	2.0	26	85	7	72	28	15	26	30	1.96
16737399--16737451	26	2.0	26	92	0	88	28	18	24	28	1.98
16740924--16740976	26	2.0	26	100	0	106	26	16	26	30	1.97
16742229--16742281	26	2.0	26	96	0	97	26	18	26	28	1.98
16741386--16743991	887	3.0	852	85	4	3179	25	24	23	26	2.00
16743965--16744017	26	2.0	26	96	0	97	28	20	24	26	1.99
16744719--16744771	26	2.0	26	100	0	106	26	20	26	26	1.99
16743418--16744891	754	2.0	746	88	3	2219	26	24	22	26	2.00
16744886--16746142	621	2.0	619	90	1	1966	26	21	22	28	1.99
16746227--16746304	26	3.0	26	98	0	147	26	17	26	28	1.98
16747142--16747194	26	2.0	26	96	0	97	28	20	24	26	1.99
16748033--16748083	26	2.0	26	100	0	102	27	21	23	27	1.99
16748483--16748535	26	2.0	26	96	0	97	26	18	26	28	1.98
16749365--16749417	26	2.0	26	88	0	79	28	20	22	28	1.99
16751118--16751196	26	3.0	26	96	0	149	26	20	25	27	1.99
16752033--16752085	26	2.0	26	96	0	97	30	18	22	28	1.98
16752933--16752985	26	2.0	26	96	0	97	26	18	26	28	1.98
16748480--16754731	883	7.0	881	86	4	8010	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16753816--16753868	26	2.0	26	89	7	81	30	18	24	26	1.98
16754429--16755067	326	2.0	326	87	2	926	24	28	25	21	1.99
16755034--16757909	892	3.2	882	81	8	3421	25	23	24	25	2.00
16757736--16758120	210	1.8	210	85	1	538	21	31	25	20	1.98
16758778--16758830	26	2.0	26	92	0	88	26	16	26	30	1.97
16760668--16760730	16	3.9	16	73	8	56	19	6	30	44	1.75
16760677--16760741	33	2.0	33	84	6	87	16	4	30	47	1.67
16762164--16762213	8	5.9	8	84	11	64	0	0	16	84	0.63
16762165--16762210	12	3.7	12	83	11	65	0	0	15	84	0.62
16762385--16762917	49	10.9	49	85	6	672	35	25	11	26	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160