genome.fa.s334.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  141  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26691009--26691056	10	4.2	11	82	15	53	77	2	18	2	0.97
26691024--26691055	6	5.7	6	92	7	50	84	0	15	0	0.63
26691401--26691472	35	2.1	35	91	0	117	34	9	12	43	1.76
26692342--26692463	59	2.1	59	96	0	226	36	15	21	27	1.93
26695608--26695674	27	2.6	25	78	17	66	58	0	2	38	1.14
26696564--26696606	22	2.0	22	95	0	77	41	9	2	46	1.48
26696871--26696951	42	1.9	42	100	0	162	19	12	8	59	1.59
26699165--26699212	13	3.8	12	81	8	51	20	2	6	70	1.19
26699168--26699207	21	1.9	21	85	10	55	20	2	7	70	1.24
26699803--26699888	43	2.0	44	88	2	129	52	5	11	30	1.61
26702300--26702472	62	2.8	61	80	4	215	39	13	4	42	1.65
26702417--26702515	45	2.2	43	81	15	105	39	15	3	42	1.62
26702418--26702515	44	2.2	44	79	16	107	38	15	3	42	1.62
26702462--26702613	59	2.6	58	80	12	150	35	11	5	48	1.62
26704246--26704615	85	4.4	83	79	4	316	48	14	14	22	1.79
26704890--26704952	17	3.8	16	75	8	54	36	14	17	31	1.90
26705240--26705284	21	2.1	21	91	0	72	44	20	6	28	1.76
26706385--26706439	24	2.2	25	87	3	76	7	9	1	81	0.93
26706401--26706472	9	9.0	8	78	15	62	13	9	1	75	1.12
26706420--26706445	7	3.7	7	100	0	52	11	0	0	88	0.52
26706420--26706454	14	2.4	14	90	4	52	14	2	0	82	0.77
26710535--26710635	32	3.2	31	68	23	77	40	10	3	44	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26710449--26710888	117	3.7	117	81	9	482	37	12	4	45	1.61
26710452--26710930	60	8.1	59	77	11	430	37	11	4	46	1.61
26710449--26710919	61	8.0	57	78	10	364	37	11	4	46	1.59
26711691--26711732	18	2.3	18	84	8	50	4	11	14	69	1.34
26714220--26714258	14	2.6	15	88	8	53	82	2	15	0	0.79
26714617--26714653	14	2.6	14	91	4	56	75	0	21	2	0.92
26715374--26715555	63	2.9	63	88	0	238	32	9	28	29	1.89
26715385--26715589	63	3.3	63	86	0	194	33	10	26	28	1.90
26715986--26716042	21	2.6	22	77	2	71	35	3	17	43	1.66
26716175--26716216	20	2.1	20	90	0	66	35	11	16	35	1.86
26716527--26716745	41	5.4	40	83	11	234	26	10	17	46	1.80
26716491--26716756	82	3.3	81	81	8	292	25	11	17	45	1.82
26716527--26716741	40	5.3	40	84	6	256	26	10	17	46	1.80
26716527--26716745	121	1.8	122	86	3	325	26	10	17	46	1.80
26719786--26719826	3	14.0	3	89	5	66	63	2	0	34	1.08
26722267--26722299	2	16.5	2	100	0	66	51	0	0	48	1.00
26725704--26725969	144	1.8	144	87	3	401	46	4	7	40	1.54
26726202--26726250	16	2.9	16	84	6	62	63	0	0	36	0.95
26726209--26726261	16	3.3	16	82	15	65	60	0	0	39	0.97
26726202--26726252	18	2.9	18	80	16	63	62	0	0	37	0.95
26726550--26726606	27	2.1	27	84	12	73	56	1	0	42	1.10
26726703--26726742	18	2.2	18	86	8	55	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26729423--26729477	16	3.4	16	74	2	56	30	7	9	52	1.60
26729415--26729477	32	1.9	33	87	3	92	33	6	7	52	1.56
26729465--26729557	20	4.6	20	87	1	114	31	5	10	52	1.58
26729632--26729891	41	6.4	41	88	6	275	29	5	12	53	1.60
26729634--26729891	82	3.2	81	90	3	378	29	5	12	53	1.60
26729634--26729891	123	2.1	121	88	4	385	29	5	12	53	1.60
26739786--26739821	18	1.9	18	88	5	54	41	5	0	52	1.24
26740922--26740972	19	2.4	23	84	15	74	52	0	0	47	1.00
26740926--26740974	22	2.4	22	90	10	77	55	0	0	44	0.99
26741379--26741427	20	2.5	20	100	0	98	10	8	6	75	1.18
26741520--26741581	19	3.3	19	80	17	67	30	1	1	66	1.11
26741589--26741657	20	3.5	19	75	7	57	17	5	5	71	1.27
26741602--26741656	20	2.8	20	78	15	60	18	7	1	72	1.16
26742517--26742566	10	5.2	10	80	9	50	14	2	0	84	0.72
26742521--26742564	14	2.9	15	83	10	54	15	2	0	81	0.78
26742527--26742566	14	2.9	14	88	7	55	17	0	0	82	0.67
26742584--26742691	20	5.4	19	73	18	69	12	7	0	78	0.99
26742597--26742687	5	18.8	5	73	18	77	13	4	1	81	0.90
26742589--26742691	29	3.3	31	77	10	104	12	6	0	79	0.97
26742597--26742687	23	3.8	24	76	18	82	13	4	1	81	0.90
26742602--26742688	35	2.5	34	83	9	97	13	5	1	79	0.97
26742722--26743000	58	4.8	58	80	6	296	49	8	8	33	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26742723--26742818	32	3.2	32	64	17	87	46	9	7	36	1.64
26742703--26743035	117	2.8	116	81	6	393	48	7	10	34	1.65
26742702--26743035	59	5.7	61	78	10	336	48	7	10	34	1.65
26742986--26743076	41	2.2	42	94	2	157	47	5	14	32	1.67
26742702--26743046	58	5.9	59	78	10	192	48	7	10	33	1.65
26743028--26743194	58	2.9	58	90	4	259	44	5	11	38	1.64
26742934--26743134	100	2.0	100	89	1	307	45	5	12	35	1.66
26750396--26750454	5	12.6	5	73	20	56	16	1	1	79	0.89
26750396--26750454	19	3.2	19	79	15	70	16	1	1	79	0.89
26750396--26750454	13	4.6	13	81	12	77	16	1	1	79	0.89
26750471--26750850	58	6.5	59	88	2	516	45	7	11	35	1.68
26750825--26750881	28	2.0	28	96	0	105	49	0	19	31	1.49
26752088--26752145	29	2.0	29	86	0	80	43	20	10	25	1.84
26754033--26754060	2	14.0	2	100	0	56	50	0	0	50	1.00
26755188--26755216	3	9.7	3	100	0	58	65	0	0	34	0.93
26756486--26756540	27	2.0	28	83	16	71	54	1	0	43	1.10
26765715--26765745	2	15.5	2	100	0	62	51	0	0	48	1.00
26766026--26766059	17	2.0	17	88	0	50	47	0	0	52	1.00
26768852--26768881	15	1.9	16	93	6	53	26	0	20	53	1.46
26769003--26769059	20	2.6	21	83	10	62	54	0	0	45	0.99
26769136--26769165	15	1.9	15	93	6	51	50	0	0	50	1.00
26769532--26769626	14	6.6	14	71	15	52	61	2	2	34	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26774329--26774355	7	3.9	7	100	0	54	59	14	0	25	1.36
26774498--26774554	26	2.2	25	81	15	62	68	5	0	26	1.11
26774679--26774750	33	2.1	34	97	2	137	8	20	4	66	1.35
26774695--26774765	33	2.2	33	84	5	90	11	25	4	59	1.50
26780170--26780194	5	5.0	5	100	0	50	20	0	0	80	0.72
26786220--26786279	23	2.5	24	91	8	95	43	5	15	36	1.68
26799384--26799434	24	2.1	24	100	0	102	15	15	50	17	1.78
26810421--26810590	62	2.8	61	78	6	189	37	12	12	37	1.82
26810599--26810760	64	2.5	64	80	4	159	32	14	11	41	1.82
26810656--26810777	64	1.9	64	82	0	154	36	13	10	39	1.80
26819141--26819182	19	2.3	19	91	4	68	33	0	0	66	0.92
26819219--26819269	13	3.9	13	75	7	50	60	0	0	39	0.97
26819259--26819303	19	2.4	19	76	0	54	68	6	0	24	1.13
26825901--26825950	21	2.2	22	79	13	57	48	4	0	48	1.20
26825916--26825957	21	2.0	21	100	0	84	42	0	0	57	0.99
26826358--26826392	13	2.8	12	91	4	52	20	2	5	71	1.19
26827042--26827174	24	5.8	24	72	20	99	32	3	10	54	1.50
26827057--26827176	47	2.6	46	86	5	154	34	2	9	54	1.46
26827227--26827296	31	2.3	31	87	2	97	31	5	10	52	1.58
26827278--26827384	20	5.5	19	66	26	55	28	5	12	54	1.60
26827309--26827372	23	2.8	23	85	2	76	29	4	9	56	1.51
26827258--26827412	78	2.0	78	90	0	247	26	5	12	56	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26827332--26827440	55	2.0	55	90	0	173	26	7	11	54	1.63
26827159--26827406	115	2.2	113	84	9	312	28	4	11	55	1.56
26827406--26827476	33	2.2	33	87	7	101	29	8	9	52	1.64
26828902--26828976	40	1.9	40	84	10	102	28	13	6	52	1.65
26829029--26829068	20	2.0	20	85	9	55	27	22	7	42	1.80
26829220--26829642	139	3.2	138	74	8	381	27	10	11	51	1.70
26829557--26829864	122	2.5	123	89	2	476	28	10	13	47	1.76
26829802--26829834	18	1.9	17	88	11	50	33	15	6	45	1.70
26831921--26831949	15	1.9	15	100	0	58	34	6	10	48	1.64
26831994--26832102	21	5.3	20	73	15	66	52	12	7	27	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160