genome.fa.s334.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  156  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31799377--31799421	17	2.6	17	80	10	56	73	4	0	22	1.01
31800673--31800813	74	1.9	74	79	2	158	46	17	21	14	1.83
31800838--31801086	87	2.9	86	82	3	302	38	18	21	21	1.93
31801015--31801260	132	1.9	131	81	4	298	35	17	22	23	1.95
31801808--31802147	33	10.4	33	74	11	113	35	14	17	32	1.90
31801824--31802139	65	4.8	65	76	9	216	37	14	18	29	1.91
31801914--31802138	32	6.9	32	81	7	222	36	13	18	31	1.89
31809450--31809493	17	2.4	19	77	14	56	52	4	9	34	1.54
31809455--31809493	17	2.4	16	87	8	60	48	5	10	35	1.59
31819459--31819506	16	2.6	18	78	21	55	45	2	2	50	1.25
31819476--31819511	16	2.2	16	90	0	54	52	0	0	47	1.00
31822886--31823019	71	1.9	71	86	4	191	65	9	5	19	1.41
31825107--31825248	76	1.9	77	92	1	241	39	12	2	45	1.54
31833460--31833507	16	2.6	18	78	21	55	45	2	2	50	1.25
31833477--31833512	16	2.2	16	90	0	54	52	0	0	47	1.00
31839103--31839241	75	1.9	75	90	3	226	38	12	2	46	1.55
31847405--31847452	16	2.6	18	78	21	55	45	2	2	50	1.25
31847422--31847457	16	2.2	16	90	0	54	52	0	0	47	1.00
31847795--31847912	37	3.1	37	66	25	102	41	13	2	42	1.58
31847795--31847935	76	1.9	76	96	0	264	41	12	2	43	1.55
31849802--31849832	15	2.1	15	93	0	53	16	32	0	51	1.44
31850107--31850145	2	19.5	2	94	0	69	53	46	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31858188--31858222	18	1.9	18	94	0	61	40	2	34	22	1.69
31875353--31875387	3	11.7	3	100	0	70	68	0	0	31	0.90
31875946--31876081	54	2.5	53	85	1	182	43	11	11	33	1.78
31875946--31876096	53	2.8	54	84	3	189	43	12	11	33	1.78
31880282--31880311	15	2.1	15	93	6	53	36	0	3	60	1.14
31896354--31896432	39	2.0	39	82	0	95	35	12	11	40	1.79
31912393--31912432	21	1.9	21	84	0	53	12	17	0	70	1.18
31926406--31926452	22	2.1	22	84	7	60	59	12	8	19	1.58
31943544--31943588	24	1.9	23	82	13	56	46	0	2	51	1.13
31951999--31952055	28	2.1	28	93	3	98	56	5	21	17	1.60
31953552--31953586	4	8.8	4	93	0	52	45	22	5	25	1.74
31954896--31954925	2	15.0	2	92	0	51	53	0	0	46	1.00
31965554--31965636	34	2.5	31	77	14	78	60	3	1	34	1.22
31966436--31966461	12	2.2	12	100	0	52	42	0	0	57	0.98
31968957--31968996	18	2.2	18	90	0	62	35	27	7	30	1.84
31972095--31972166	18	4.2	18	69	15	53	45	2	2	48	1.31
31990689--31990721	17	1.9	17	100	0	66	36	36	0	27	1.57
31993843--31993875	15	2.1	16	88	5	50	21	21	0	57	1.41
31996523--31996721	97	2.1	97	98	0	380	40	18	14	26	1.89
32015678--32015730	27	2.0	27	84	0	70	77	1	9	11	1.07
32019256--32019293	15	2.6	15	87	4	51	89	7	0	2	0.57
32019783--32019827	12	3.8	12	82	11	56	33	37	4	24	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32022017--32022082	26	2.4	27	80	14	82	74	3	19	3	1.09
32036026--32036062	17	2.2	17	90	0	56	0	5	5	89	0.60
32037158--32037200	21	2.0	21	95	0	77	32	16	18	32	1.93
32038207--32038241	2	17.5	2	87	0	52	48	2	2	45	1.32
32045860--32045884	2	12.5	2	100	0	50	0	48	0	52	1.00
32059944--32060006	19	3.3	20	62	20	53	47	15	19	17	1.83
32059937--32060011	37	2.0	37	97	0	141	45	14	21	18	1.85
32067224--32067275	22	2.3	23	77	12	54	50	0	0	50	1.00
32086009--32086039	2	15.5	2	100	0	62	48	0	0	51	1.00
32105030--32105059	3	9.7	3	92	7	51	66	3	30	0	1.07
32110098--32110137	3	13.3	3	100	0	80	67	0	0	32	0.91
32111060--32111214	51	3.0	52	78	6	138	29	21	5	42	1.76
32111240--32111282	22	2.0	22	95	0	77	48	20	0	30	1.50
32111242--32111281	11	3.6	11	82	0	53	50	20	0	30	1.49
32113815--32113856	2	20.5	2	85	4	57	42	2	2	52	1.27
32117481--32117512	8	4.0	8	91	0	55	40	0	0	59	0.97
32124703--32124738	17	2.1	18	89	5	56	27	2	2	66	1.19
32124860--32124923	27	2.4	25	84	10	74	48	0	3	48	1.17
32124934--32124983	20	2.4	21	90	9	77	52	0	0	48	1.00
32125222--32125287	32	2.1	32	100	0	132	54	9	12	24	1.66
32128249--32128285	10	3.8	10	92	3	58	5	43	13	37	1.67
32129977--32130021	12	3.7	12	81	3	54	48	13	0	37	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32137359--32137421	20	3.2	20	90	0	99	30	19	19	31	1.96
32137591--32137620	2	15.0	2	100	0	60	0	0	50	50	1.00
32140629--32140660	16	2.0	16	100	0	64	56	12	18	12	1.67
32145278--32145321	14	2.9	15	78	21	56	59	0	0	40	0.98
32146336--32146366	16	2.0	15	93	6	53	45	3	0	51	1.17
32147078--32147108	3	10.3	3	92	0	53	32	3	0	64	1.09
32151616--32151668	26	2.0	26	100	0	106	45	26	11	16	1.82
32156454--32156502	12	3.8	13	78	13	57	57	0	0	42	0.99
32160861--32160894	16	2.1	16	88	0	50	64	29	5	0	1.17
32166327--32166357	2	15.5	2	93	0	53	54	0	0	45	0.99
32167493--32167534	23	1.9	21	85	9	57	30	16	21	30	1.95
32175163--32175312	77	1.9	77	97	0	282	16	16	10	56	1.66
32186462--32186541	38	2.1	38	95	0	142	31	0	6	62	1.20
32189224--32189248	8	3.1	8	100	0	50	36	12	12	40	1.79
32191559--32191609	25	2.1	23	85	10	66	45	3	1	49	1.32
32193456--32193484	7	4.3	7	95	4	51	89	0	10	0	0.48
32194451--32194485	14	2.5	14	90	0	61	42	0	5	51	1.25
32195013--32195046	14	2.3	15	90	5	52	52	0	0	47	1.00
32208547--32208571	12	2.1	12	100	0	50	52	40	0	8	1.31
32216231--32216305	27	2.8	27	77	6	71	24	6	32	37	1.81
32220652--32220682	14	2.2	14	100	0	62	74	0	25	0	0.82
32226121--32226155	4	8.8	4	100	0	70	48	25	0	25	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32228736--32228776	15	2.6	16	81	14	50	12	26	0	60	1.31
32236267--32236301	18	1.9	19	88	11	56	40	0	0	60	0.97
32236553--32236595	18	2.4	18	84	0	59	62	0	0	37	0.95
32253796--32253832	17	2.2	17	100	0	74	62	0	0	37	0.96
32262123--32262164	22	1.9	22	90	0	66	54	2	7	35	1.41
32288722--32288763	22	1.9	22	85	0	57	40	14	2	42	1.58
32294108--32294157	20	2.4	21	90	3	75	26	2	6	66	1.26
32298915--32298958	15	2.9	15	79	0	52	27	2	18	52	1.57
32298963--32299108	29	5.0	30	70	7	102	15	3	35	45	1.63
32298975--32299116	59	2.4	58	88	2	196	16	2	33	46	1.62
32299018--32299059	22	1.9	22	85	9	59	19	0	30	50	1.48
32298975--32299059	30	2.9	29	75	3	98	15	2	34	48	1.58
32299047--32299107	22	2.9	22	76	9	56	16	3	34	45	1.63
32299202--32299284	35	2.5	32	78	7	85	39	1	2	56	1.20
32299369--32299410	3	14.7	3	85	9	61	30	0	2	66	1.04
32299371--32299412	22	1.9	22	100	0	84	30	0	2	66	1.04
32299369--32299447	25	3.3	24	80	13	92	29	2	3	64	1.24
32300580--32300623	3	14.7	3	100	0	88	34	0	0	65	0.93
32301123--32301162	19	2.1	19	85	4	53	27	10	10	52	1.66
32301551--32301588	17	2.2	18	90	4	60	23	0	2	73	0.95
32301661--32302141	58	8.2	56	73	15	201	48	5	9	35	1.60
32301661--32302141	60	8.2	58	76	12	387	48	5	9	35	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32305129--32305185	23	2.5	23	100	0	114	31	5	12	50	1.62
32305684--32305728	19	2.4	18	85	7	63	80	4	15	0	0.87
32305684--32305731	9	5.4	8	81	16	51	81	4	14	0	0.84
32306130--32306188	8	7.9	7	76	12	55	77	0	16	5	0.93
32306094--32306137	23	2.0	21	83	16	54	68	0	20	11	1.20
32306121--32306193	31	2.3	33	85	4	105	79	0	15	5	0.90
32306122--32306173	16	3.3	16	86	5	79	82	0	11	5	0.82
32307279--32307322	21	2.1	21	82	0	52	45	6	13	34	1.70
32307350--32307423	22	3.5	21	87	5	105	39	13	13	33	1.84
32307284--32307502	101	2.2	100	87	4	307	40	10	15	34	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160