genome.fa.s334.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  77  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15289670--15289719	26	1.9	26	91	0	82	32	20	24	24	1.98
15288333--15289785	721	2.0	720	96	0	2658	26	22	24	26	2.00
15292143--15292195	26	2.0	26	92	0	88	26	20	26	26	1.99
15293039--15293089	26	2.0	26	92	0	84	27	13	27	31	1.94
15292654--15293865	603	2.0	608	86	3	1703	26	26	23	23	2.00
15294530--15294581	26	2.0	26	96	0	95	26	17	26	28	1.97
15293263--15295439	890	2.4	886	87	2	3152	26	23	23	26	2.00
15295468--15295497	4	7.5	4	92	0	51	0	23	73	3	0.98
15294762--15296157	718	1.9	717	90	1	2208	25	22	24	27	2.00
15296219--15296256	20	1.9	20	94	0	67	18	28	42	10	1.83
15296298--15308525	887	13.7	887	79	7	12369	25	24	24	25	2.00
15298854--15298906	26	2.0	26	96	0	97	28	18	26	26	1.98
15299670--15299739	26	2.7	26	91	2	115	28	17	27	27	1.97
15300574--15300625	25	2.0	26	92	3	88	30	21	21	26	1.98
15301446--15301498	26	2.0	26	96	0	97	26	18	26	28	1.98
15302333--15302385	26	2.0	26	92	0	88	26	20	26	26	1.99
15303217--15303267	26	2.0	26	96	0	93	29	19	25	25	1.99
15304105--15304156	26	2.0	26	96	0	95	28	19	25	26	1.98
15304996--15305045	25	2.0	26	96	4	93	28	20	26	26	1.99
15305881--15305933	26	2.0	26	85	7	72	26	16	26	30	1.97
15306728--15306780	26	2.0	26	82	7	63	30	16	26	26	1.97
15307792--15309226	701	2.1	698	87	3	2091	25	23	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15308491--15317003	890	9.6	888	86	3	10706	25	23	24	26	2.00
15310981--15311033	26	2.0	26	96	0	97	26	18	26	28	1.98
15312741--15312790	26	1.9	26	95	0	91	26	20	26	28	1.99
15313630--15313682	26	2.0	26	85	0	70	28	18	26	26	1.98
15314532--15314584	26	2.0	26	92	0	88	28	18	24	28	1.98
15319424--15320137	61	11.9	61	85	6	860	31	16	7	43	1.77
15319424--15320126	242	2.9	242	94	1	1213	31	17	8	43	1.78
15319424--15320137	181	4.0	182	86	5	881	31	16	7	43	1.77
15320145--15320179	8	4.5	8	85	7	54	85	0	0	14	0.59
15320146--15320215	15	4.4	15	77	12	61	77	0	7	15	0.98
15320146--15320260	15	7.2	15	67	21	56	73	1	4	20	1.10
15321217--15321271	4	14.5	4	85	11	64	70	0	0	29	0.87
15321217--15321284	8	8.9	8	80	15	54	66	2	0	30	1.07
15323036--15323090	25	2.2	26	86	3	76	29	21	23	25	1.99
15321436--15323953	875	2.8	888	87	4	3480	25	23	24	26	2.00
15323297--15324673	701	2.0	700	90	0	2182	26	22	22	27	1.99
15325486--15325539	26	2.1	26	89	0	81	29	16	25	27	1.97
15328424--15328476	26	2.0	26	88	0	79	24	18	26	30	1.98
15327404--15329330	892	2.2	880	86	2	2700	25	25	24	25	2.00
15329275--15329727	167	2.8	164	80	5	456	22	29	29	18	1.97
15330333--15330383	26	2.0	26	88	0	75	27	13	27	31	1.94
15331217--15331269	26	2.0	26	96	0	97	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15331403--15331453	26	2.0	26	84	0	66	33	13	21	31	1.92
15331188--15331546	185	1.9	185	86	1	504	22	26	28	21	1.99
15331747--15331797	26	2.0	26	96	0	93	27	15	29	27	1.96
15331016--15332076	529	2.0	529	86	2	1488	23	28	28	19	1.98
15331720--15332135	185	2.2	184	84	3	521	21	28	28	22	1.99
15332791--15332840	26	1.9	26	95	0	91	32	20	26	22	1.98
15333665--15333715	26	2.0	26	92	0	84	27	15	27	29	1.96
15335442--15335494	26	2.0	26	96	0	97	28	20	24	26	1.99
15331902--15337737	890	6.6	888	85	4	7427	25	24	24	26	2.00
15337193--15337244	26	2.0	26	96	0	95	28	19	25	26	1.98
15337236--15338241	505	2.0	500	87	2	1451	23	22	25	28	1.99
15338582--15338660	26	3.0	26	98	0	149	26	18	26	27	1.98
15340363--15340414	26	2.0	26	96	0	95	28	19	25	26	1.98
15337737--15340904	864	3.6	882	84	5	4005	25	24	24	25	2.00
15341773--15341851	26	3.0	26	98	0	149	26	20	25	27	1.99
15342695--15342747	26	2.0	26	88	0	79	26	18	26	28	1.98
15343566--15343617	25	2.0	26	96	3	97	25	17	26	30	1.97
15346213--15346265	26	2.0	26	96	0	97	26	18	26	28	1.98
15340907--15350903	888	11.3	888	84	5	12174	25	24	24	25	2.00
15347979--15348030	26	2.0	26	96	0	95	28	19	25	26	1.98
15348343--15350903	862	2.9	863	85	4	3347	24	24	24	25	2.00
15350991--15351043	26	2.0	26	96	0	97	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15352696--15352749	26	2.1	26	96	0	99	31	22	24	22	1.98
15351595--15355575	878	4.5	860	83	6	4600	24	25	24	25	2.00
15351596--15355335	865	4.3	863	83	7	4219	24	25	24	25	2.00
15357437--15357487	26	2.0	26	88	0	75	29	17	25	27	1.98
15356578--15359232	880	3.0	880	86	3	3587	25	24	24	26	2.00
15363163--15363215	26	2.0	26	92	0	88	26	16	26	30	1.97
15364055--15364107	26	2.0	26	96	0	97	26	22	24	26	2.00
15362532--15364669	889	2.4	885	88	2	3133	25	23	23	26	2.00
15366379--15366431	26	2.0	26	92	0	88	24	18	26	30	1.98
15364668--15371521	885	7.8	881	84	5	8485	25	24	24	26	2.00
15368533--15368585	26	2.0	26	85	0	70	24	5	9	60	1.49
15368991--15369050	26	2.4	26	81	15	81	25	18	25	31	1.97
15370725--15370775	26	2.0	26	96	0	93	29	17	23	29	1.97
15371889--15371941	26	2.0	26	92	0	88	28	16	26	28	1.97
15372722--15372904	100	1.8	100	89	0	285	22	32	24	19	1.97
15374555--15374607	26	2.0	26	96	0	97	28	20	24	26	1.99
15375443--15375493	26	2.0	26	100	0	102	29	19	23	27	1.98
15373707--15377549	886	4.3	887	86	2	5025	25	24	24	25	2.00
15377219--15377271	26	2.0	26	92	0	88	26	18	28	26	1.98
15378851--15378903	26	2.0	26	92	0	88	28	18	24	28	1.98
15379732--15379784	26	2.0	26	92	0	88	24	18	28	28	1.98
15380618--15380670	26	2.0	26	96	0	97	26	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15377540--15389195	889	13.2	889	87	2	15307	25	23	24	26	2.00
15382399--15382450	26	2.0	26	96	3	97	26	21	25	26	1.99
15383284--15383333	26	1.9	26	100	0	100	28	22	26	24	1.99
15384176--15384228	26	2.0	26	92	0	88	26	20	24	28	1.99
15385061--15385111	26	2.0	26	100	0	102	27	15	29	27	1.96
15387712--15387764	26	2.0	26	96	0	97	26	18	26	28	1.98
15388602--15388654	26	2.0	26	85	7	72	26	20	24	28	1.99
15391352--15391404	26	2.0	26	92	0	88	24	22	24	28	2.00
15391036--15393134	866	2.4	862	84	3	2549	25	24	23	25	2.00
15393108--15393160	26	2.0	26	96	0	97	26	18	26	28	1.98
15393134--15393509	159	2.4	159	83	0	475	24	29	27	18	1.98
15394916--15395291	159	2.4	158	82	5	427	23	28	26	22	1.99
15396806--15396855	26	1.9	26	91	0	82	30	18	26	26	1.98
15397691--15397743	26	2.0	26	92	0	88	26	20	26	26	1.99
15393285--15401758	888	9.7	862	79	7	8578	25	24	24	25	2.00
15403533--15403582	26	1.9	26	91	0	82	30	22	26	22	1.99
15401759--15406992	889	5.9	885	85	4	6815	25	24	24	25	2.00
15405290--15405342	26	2.0	26	92	0	88	28	18	24	28	1.98
15405183--15406992	888	2.0	893	87	2	2618	24	24	24	25	2.00
15408595--15408646	25	2.0	26	92	3	88	26	21	25	26	1.99
15406996--15410401	888	3.8	884	87	3	4716	25	23	24	25	2.00
15409709--15409734	8	3.2	8	100	0	52	0	11	73	15	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15411079--15411131	26	2.0	26	100	0	106	26	20	26	26	1.99
15411967--15412019	26	2.0	26	92	0	88	26	18	28	26	1.98
15412857--15412909	26	2.0	26	100	0	106	26	20	26	26	1.99
15410348--15414921	889	5.1	888	84	4	5751	25	23	24	26	2.00
15413744--15413796	26	2.0	26	96	0	97	24	16	28	30	1.97
15414671--15414723	26	2.0	26	92	0	88	28	18	24	28	1.98
15415058--15415110	26	2.0	26	96	0	97	28	18	26	26	1.98
15415941--15415991	26	2.0	26	100	0	102	29	19	23	27	1.98
15416825--15416877	26	2.0	26	92	0	88	28	18	22	30	1.98
15418575--15418627	26	2.0	26	85	0	70	28	16	22	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160