genome.fa.s334.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  60  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12606434--12606458	1	25.0	1	100	0	50	100	0	0	0	0.00
12609298--12609331	15	2.3	15	90	10	52	35	8	0	55	1.31
12614461--12614497	1	37.0	1	100	0	74	100	0	0	0	0.00
12615263--12615292	13	2.2	13	94	5	51	83	0	0	16	0.65
12615609--12615830	77	2.8	78	81	6	236	44	19	8	28	1.79
12621434--12621460	14	1.9	14	100	0	54	18	0	22	59	1.38
12622119--12622153	13	2.6	13	90	4	52	68	2	2	25	1.17
12622318--12622380	27	2.3	27	86	8	83	38	4	7	49	1.53
12622528--12622578	18	2.8	18	82	11	59	74	3	5	15	1.16
12623551--12623594	16	2.8	16	85	0	52	65	6	2	25	1.28
12623547--12623597	19	2.7	19	81	0	66	64	5	3	25	1.33
12624255--12624355	29	3.4	29	74	15	116	49	16	17	15	1.80
12624278--12624374	29	3.4	28	72	17	99	46	16	19	17	1.84
12624253--12624387	60	2.2	60	100	0	270	48	16	18	17	1.82
12624284--12624386	31	3.4	31	74	15	124	47	16	20	15	1.82
12625662--12625694	14	2.3	15	89	5	50	3	18	0	78	0.87
12625668--12625707	20	2.0	21	85	9	57	2	15	2	80	0.93
12629936--12629968	11	3.1	11	91	4	50	6	6	3	84	0.84
12629970--12630036	28	2.3	28	85	10	82	34	7	7	50	1.58
12629981--12630037	28	2.0	27	90	10	87	35	8	7	49	1.61
12630166--12630251	13	7.2	12	74	20	56	77	5	3	12	1.07
12634097--12634160	31	2.0	32	84	3	85	51	14	10	23	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12634977--12635020	22	2.0	22	100	0	88	22	18	4	54	1.61
12636746--12636792	23	2.1	21	84	7	58	53	2	6	38	1.39
12637466--12637515	24	2.1	24	85	3	66	76	2	6	16	1.08
12642476--12642536	30	2.2	26	86	13	79	55	16	3	24	1.56
12645131--12645281	82	1.8	82	84	2	205	27	15	10	46	1.78
12648338--12648392	26	2.1	26	93	0	92	36	18	3	41	1.68
12649628--12649664	12	3.2	12	84	7	58	29	5	0	64	1.15
12651272--12651310	20	2.0	20	84	0	51	48	0	15	35	1.45
12651415--12651448	2	17.0	2	93	0	59	50	2	0	47	1.16
12653768--12654113	188	1.8	189	87	0	523	39	9	9	42	1.70
12661362--12661593	123	1.9	123	99	0	455	19	31	19	29	1.97
12662546--12662580	13	2.7	13	100	0	70	57	5	14	22	1.59
12665034--12665068	19	1.9	18	88	11	54	28	8	0	62	1.24
12665511--12665564	16	3.4	15	87	7	63	51	1	0	46	1.11
12665537--12665599	24	2.5	24	89	5	90	47	3	1	47	1.27
12665639--12665680	22	1.9	22	85	0	57	61	2	0	35	1.09
12665958--12665997	3	13.3	3	100	0	80	67	0	0	32	0.91
12666668--12666694	7	3.9	7	100	0	54	85	0	0	14	0.61
12668803--12668862	2	30.0	2	100	0	120	50	0	0	50	1.00
12669312--12669348	17	2.1	18	95	5	67	51	0	0	48	1.00
12669636--12669669	13	2.5	14	85	4	52	14	2	2	79	0.97
12675403--12675442	2	20.0	2	100	0	80	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12675442--12675470	2	14.5	2	100	0	58	48	0	0	51	1.00
12678331--12678376	23	2.0	23	86	0	65	50	6	13	30	1.66
12684331--12684386	23	2.4	23	82	5	69	33	1	0	64	1.04
12684619--12684669	12	4.3	12	76	14	52	60	0	1	37	1.08
12684618--12684696	35	2.1	39	86	9	112	56	0	1	41	1.07
12684622--12684681	23	2.6	23	84	7	68	56	0	1	41	1.09
12684646--12684701	20	2.8	19	89	5	85	55	0	0	44	0.99
12684652--12684726	15	5.3	14	78	16	66	53	1	1	44	1.17
12684580--12684747	42	4.0	42	74	21	124	57	1	2	39	1.20
12684764--12684886	19	6.5	18	67	23	58	45	1	1	51	1.20
12684811--12684851	16	2.5	17	76	11	50	46	0	2	51	1.14
12685132--12685189	31	1.9	30	82	10	73	50	3	1	44	1.29
12690502--12690582	25	3.5	23	69	16	60	40	0	2	56	1.12
12690717--12690751	18	2.0	18	88	5	54	54	0	8	37	1.31
12691677--12691743	21	3.2	21	91	0	98	41	16	20	20	1.90
12693372--12693415	19	2.3	20	81	14	58	47	6	4	40	1.50
12693735--12693794	27	2.2	28	88	8	97	50	6	3	40	1.45
12694504--12694552	18	2.6	19	78	15	57	67	8	4	20	1.34
12694763--12694840	25	3.1	24	70	17	68	41	3	3	51	1.38
12694765--12694843	24	3.2	22	71	22	59	39	3	3	53	1.37
12695313--12695366	23	2.4	22	84	6	72	51	1	3	42	1.30
12702180--12702205	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12702429--12702484	4	14.0	4	92	0	67	50	8	0	41	1.34
12703161--12703199	19	2.2	17	86	13	53	41	5	7	46	1.55
12707784--12707827	22	2.0	22	90	0	70	43	11	11	34	1.77
12711683--12711726	22	2.0	22	90	0	70	43	11	11	34	1.77
12712319--12712358	20	2.0	21	85	5	55	52	7	7	32	1.58
12713085--12713153	25	2.8	24	75	14	70	47	1	1	49	1.19
12713546--12713593	14	3.3	14	77	11	51	41	6	0	52	1.27
12713952--12713999	23	2.0	24	92	4	80	54	0	0	45	0.99
12717484--12717525	2	21.0	2	100	0	84	50	0	0	50	1.00
12717635--12717677	18	2.4	18	85	14	54	81	0	9	9	0.88
12717635--12717679	17	2.6	16	86	10	54	80	0	8	11	0.92
12719251--12719278	2	14.0	2	100	0	56	50	0	0	50	1.00
12729951--12729987	5	6.7	6	93	6	53	32	0	0	67	0.91
12730005--12730146	71	2.0	72	83	6	180	47	4	10	38	1.58
12730016--12730332	134	2.4	137	81	7	355	46	4	9	39	1.57
12730233--12730388	60	2.6	59	82	8	192	48	5	11	34	1.63
12730479--12730508	9	3.3	9	90	0	51	6	10	3	80	1.01
12735740--12736187	46	9.8	46	77	10	279	39	10	15	34	1.82
12735806--12735938	71	1.9	71	85	0	185	42	12	14	31	1.82
12735785--12736074	159	1.8	158	85	5	406	39	10	15	34	1.82
12735944--12736187	71	3.5	71	92	3	381	38	9	15	35	1.81
12735802--12736187	184	2.1	184	85	5	523	39	10	15	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12735765--12736190	230	1.9	229	87	4	635	39	10	15	33	1.82
12736232--12736432	21	9.8	21	74	14	154	37	9	16	36	1.81
12736107--12736512	121	3.3	122	88	3	602	37	10	16	35	1.83
12736472--12736512	21	2.0	21	95	0	73	36	7	19	36	1.80
12736474--12736519	21	2.2	21	88	0	65	41	8	19	30	1.82
12736790--12736840	14	3.4	15	77	15	52	47	7	7	37	1.62
12737029--12737215	42	4.5	42	75	8	184	26	10	19	42	1.84
12737030--12737274	85	2.9	85	78	10	234	24	12	19	43	1.85
12738472--12738696	62	3.5	60	77	21	224	47	5	10	36	1.60
12738711--12738867	62	2.6	61	88	1	242	44	6	14	34	1.71
12738493--12738830	135	2.5	132	85	7	418	48	4	12	34	1.61
12744434--12744585	80	1.9	82	80	2	182	51	4	7	35	1.51
12745907--12746046	75	2.0	73	83	9	182	42	7	4	45	1.51
12748220--12748252	2	16.5	2	93	0	57	51	0	3	45	1.16
12752763--12752787	2	12.5	2	100	0	50	48	0	0	52	1.00
12756545--12756581	2	18.5	2	100	0	74	48	0	51	0	1.00
12764403--12764476	37	2.0	37	84	5	96	40	0	0	59	0.97
12764405--12764470	29	2.4	28	84	5	89	40	0	0	59	0.98
12764433--12764475	21	2.0	22	86	4	61	37	0	0	62	0.95
12765892--12765946	27	2.0	27	92	0	92	43	12	9	34	1.74
12767577--12767624	24	2.0	24	92	8	80	18	0	6	75	1.01
12767578--12767618	13	3.4	12	81	18	50	19	0	2	78	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12767589--12767625	18	2.1	18	100	0	74	16	0	5	78	0.93
12767581--12767628	12	4.2	11	78	7	51	18	0	4	77	0.93
12767716--12767830	12	9.2	12	71	20	51	24	4	13	58	1.53
12767715--12767828	25	4.6	25	71	21	80	25	4	13	57	1.55
12767794--12767849	15	3.6	15	70	25	53	25	5	14	55	1.60
12767800--12767865	31	2.1	32	91	2	107	19	7	16	56	1.64
12767926--12767977	12	4.4	11	75	15	50	25	7	13	53	1.65
12767916--12767977	25	2.5	23	85	15	72	25	9	14	50	1.73
12767936--12768018	40	2.0	43	83	9	109	22	6	14	56	1.60
12769525--12769884	170	2.1	167	84	4	465	32	10	12	44	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160