genome.fa.s334.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  6  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1569877--1569916	16	2.5	16	91	0	62	35	2	22	40	1.68
1574652--1574690	20	2.0	20	100	0	78	46	15	20	17	1.84
1583883--1583916	12	2.8	12	86	0	50	67	0	32	0	0.91
1604641--1604707	30	2.3	29	92	2	107	41	2	14	40	1.62
1607258--1607287	11	2.7	11	94	0	51	36	6	13	43	1.70
1614786--1614810	2	12.5	2	100	0	50	52	0	0	48	1.00
1622294--1622319	13	2.0	13	100	0	52	23	23	23	30	1.99
1623199--1623284	42	2.0	42	88	4	129	41	9	16	32	1.80
1631778--1631900	58	2.1	58	86	3	167	30	13	11	44	1.79
1632783--1632829	3	15.7	3	100	0	94	68	0	0	31	0.90
1633863--1633893	15	2.1	15	93	0	53	6	9	0	83	0.79
1634831--1634867	3	12.7	3	94	5	67	67	0	0	32	0.91
1634866--1634895	3	10.0	3	100	0	60	33	0	0	66	0.92
1635131--1635155	5	5.0	5	100	0	50	20	20	40	20	1.92
1635575--1635626	2	26.5	2	81	11	63	44	3	1	50	1.31
1636179--1636226	2	24.5	2	87	4	71	52	4	0	43	1.20
1636625--1636652	3	9.3	3	100	0	56	64	0	0	35	0.94
1636651--1636675	3	8.3	3	100	0	50	36	0	0	64	0.94
1639089--1639167	29	2.7	29	73	13	72	39	0	3	56	1.17
1639089--1639175	18	4.6	18	71	22	54	37	0	3	58	1.15
1639135--1639189	19	2.9	18	79	12	58	38	0	0	61	0.96
1641122--1641164	15	3.1	13	78	15	50	55	2	0	41	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1642020--1642059	11	3.5	11	80	6	53	70	0	0	30	0.88
1652399--1652623	112	2.0	112	93	0	387	35	12	10	41	1.78
1652613--1652653	15	2.5	17	80	11	50	31	17	0	51	1.46
1654716--1654775	30	2.0	29	87	9	86	36	11	20	31	1.88
1657752--1657901	74	2.0	74	100	0	300	29	16	16	38	1.90
1674316--1674350	15	2.3	15	95	0	61	31	8	0	60	1.27
1675217--1675258	20	2.0	21	86	4	59	33	7	0	59	1.25
1679347--1679396	25	2.0	25	100	0	100	44	12	16	28	1.83
1681975--1682014	20	2.0	21	90	5	64	47	5	0	47	1.24
1682058--1682103	22	2.1	22	95	0	83	43	6	0	50	1.28
1683107--1683131	3	8.3	3	100	0	50	68	0	0	32	0.90
1693616--1693647	16	1.9	16	93	6	55	0	6	6	87	0.67
1699095--1699125	16	1.9	16	100	0	62	0	0	9	90	0.46
1699886--1699926	20	2.0	21	85	4	57	31	4	4	58	1.40
1703240--1703282	20	2.2	20	86	0	59	32	6	4	55	1.47
1729526--1729574	17	2.9	17	78	6	55	38	0	0	61	0.96
1742255--1742302	22	2.2	21	79	17	53	50	10	0	39	1.37
1742397--1742462	32	2.1	31	83	8	80	53	3	0	43	1.16
1751336--1751378	13	3.4	13	87	3	61	62	0	0	37	0.95
1756313--1756339	2	13.5	2	100	0	54	51	0	0	48	1.00
1757019--1757065	21	2.2	22	88	3	69	63	0	2	34	1.06
1757015--1757081	27	2.5	26	87	2	98	62	0	1	35	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1757148--1757185	18	2.2	18	85	4	51	47	0	0	52	1.00
1763035--1763064	15	1.9	15	93	6	51	33	0	6	60	1.23
1763023--1763105	18	4.9	15	73	16	58	39	3	2	54	1.31
1763081--1763148	22	2.8	23	84	15	84	44	0	2	52	1.16
1763033--1763146	18	6.7	17	68	18	60	41	1	3	53	1.28
1763033--1763148	50	2.3	50	83	8	137	41	1	3	53	1.28
1763323--1763351	15	1.9	15	100	0	58	48	0	0	51	1.00
1768309--1768338	15	2.1	15	93	6	53	50	6	20	23	1.71
1774847--1774915	31	2.2	31	97	0	129	50	24	13	11	1.74
1781078--1781133	18	2.9	18	89	7	76	32	3	0	64	1.11
1781697--1781760	28	2.2	29	83	10	78	35	1	3	59	1.23
1781823--1781863	18	2.3	19	79	12	50	39	2	0	58	1.11
1786545--1786574	15	2.1	14	93	6	51	46	0	53	0	1.00
1802983--1803030	13	3.5	13	80	5	51	47	2	0	50	1.12
1802983--1803033	27	1.9	27	84	11	70	49	1	0	49	1.12
1803577--1803611	16	2.2	16	89	0	52	28	2	2	65	1.21
1815584--1815613	4	7.5	4	92	0	51	73	0	0	26	0.84
1817440--1817492	27	2.0	27	88	0	79	18	18	37	24	1.94
1820971--1820997	2	13.5	2	100	0	54	48	0	0	51	1.00
1822851--1822890	20	2.0	21	90	5	64	35	2	0	62	1.09
1822892--1822938	18	2.6	17	80	6	58	55	4	0	40	1.19
1823716--1823759	16	2.6	18	82	10	56	27	0	2	70	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1832770--1832815	18	2.6	18	80	13	58	34	0	0	65	0.93
1837237--1837276	16	2.7	14	88	7	53	55	0	0	45	0.99
1837242--1837283	16	2.6	16	84	3	57	57	0	0	42	0.99
1837242--1837291	25	2.0	24	88	3	73	60	0	0	40	0.97
1839734--1839759	2	13.0	2	100	0	52	50	0	0	50	1.00
1839868--1839895	2	14.0	2	100	0	56	50	0	0	50	1.00
1840535--1840611	40	1.9	40	97	0	145	54	5	1	38	1.31
1857462--1857670	111	1.9	110	91	3	339	34	17	9	38	1.81
1859850--1859901	21	2.4	21	80	3	59	32	3	3	59	1.33
1867469--1868094	312	2.0	312	96	0	1162	33	24	16	26	1.96
1882564--1882623	30	2.0	30	83	3	77	48	0	0	51	1.00
1886957--1886988	2	16.0	2	93	0	55	53	0	46	0	1.00
1887435--1887459	2	12.5	2	100	0	50	48	0	0	52	1.00
1888359--1888383	12	2.1	12	100	0	50	92	0	8	0	0.40
1894803--1894847	19	2.4	19	96	0	81	42	42	6	8	1.62
1902021--1902051	16	1.9	16	93	0	53	45	0	3	51	1.17
1904529--1904573	19	2.4	19	88	0	63	42	0	0	57	0.98
1915756--1915787	15	2.2	14	94	5	55	62	0	0	37	0.95
1925996--1926064	33	2.1	32	82	12	79	44	0	0	55	0.99
1926041--1926092	16	3.5	15	82	12	63	40	0	0	59	0.97
1928189--1928216	13	2.2	13	100	0	56	42	0	0	57	0.99
1929560--1929599	21	1.9	21	84	0	53	42	0	2	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1929645--1929676	15	2.1	16	88	11	50	46	6	15	31	1.71
1937535--1937586	14	3.6	14	77	10	59	50	0	1	48	1.12
1937526--1937585	30	2.0	30	90	0	93	46	1	1	50	1.21
1939579--1939625	24	2.0	24	95	0	85	23	17	6	53	1.66
1951835--1951886	21	2.5	22	93	6	90	51	0	0	48	1.00
1951874--1951932	14	4.2	14	75	12	50	59	1	0	38	1.08
1952016--1952067	16	3.2	16	80	0	59	65	1	0	32	1.04
1953995--1954045	17	2.7	19	79	14	61	64	1	1	31	1.15
1958061--1958118	21	2.8	21	70	21	50	36	3	6	53	1.45
1967200--1967257	28	2.1	28	83	3	73	62	3	6	27	1.37
1967973--1968083	22	5.2	21	70	17	77	54	5	2	37	1.38
1986822--1986862	16	2.6	16	92	0	64	51	14	2	31	1.56
1986824--1986860	14	2.6	14	91	0	56	51	16	2	29	1.58
1997168--1998032	161	5.4	161	81	3	879	35	9	13	42	1.76
1997287--1998032	322	2.3	316	86	3	994	35	8	13	42	1.75
1997309--1998118	322	2.5	321	81	8	904	34	8	14	42	1.75
2010334--2010365	2	16.0	2	100	0	64	50	0	0	50	1.00
2010822--2010882	31	2.0	32	87	6	90	45	0	0	54	1.00
2019826--2019868	14	3.2	14	80	9	54	53	4	0	41	1.21
2019812--2019882	26	3.0	22	75	16	61	57	2	0	39	1.13
2019809--2019917	22	4.9	23	70	11	77	58	1	0	39	1.09
2019861--2019928	21	3.0	22	80	10	75	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2019861--2019926	24	2.9	24	73	17	68	65	0	0	34	0.93
2020024--2020058	17	2.1	17	88	0	52	68	0	2	28	1.04
2020217--2020255	21	1.9	21	84	5	53	53	2	0	43	1.14
2020960--2020994	18	1.9	18	94	0	61	68	5	2	22	1.24
2021737--2021761	10	2.5	10	100	0	50	36	0	0	64	0.94
2021727--2021777	9	5.7	9	81	6	50	25	1	0	72	0.95
2023290--2023337	19	2.5	19	77	12	53	14	0	6	79	0.92
2023310--2023347	16	2.3	17	86	4	51	15	2	7	73	1.17
2034665--2034716	22	2.3	23	77	6	54	36	1	1	59	1.19
2043610--2043640	2	15.5	2	93	0	53	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160