genome.fa.s334.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  81  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15817419--15820322	862	3.3	863	85	5	3749	25	23	23	26	2.00
15820061--15820590	268	2.0	268	92	0	889	24	16	20	38	1.93
15820933--15820985	26	2.0	26	100	0	106	26	20	26	26	1.99
15820325--15830975	892	12.1	890	83	5	12720	25	24	24	26	2.00
15826164--15826216	26	2.0	26	92	0	88	26	15	24	33	1.95
15820325--15830975	885	12.1	865	81	7	11210	25	24	24	26	2.00
15829690--15829740	26	2.0	26	96	0	93	27	13	29	29	1.94
15832740--15832791	26	2.0	26	96	0	95	28	19	25	26	1.98
15831135--15833311	876	2.5	881	87	2	3131	25	23	24	26	2.00
15833409--15834861	702	2.1	704	88	1	2164	26	22	23	27	2.00
15834964--15836393	685	2.1	688	90	2	2235	26	23	23	27	2.00
15836397--15836813	159	2.6	159	88	2	593	22	29	30	17	1.97
15837411--15837463	26	2.0	26	92	0	88	24	18	28	28	1.98
15838276--15838333	26	2.3	26	82	5	75	27	17	24	31	1.97
15839124--15839176	26	2.0	26	96	0	97	28	20	24	26	1.99
15836698--15840958	856	4.9	855	84	6	5222	24	23	24	26	2.00
15839980--15840032	26	2.0	26	92	0	88	28	22	22	26	1.99
15840873--15840924	26	2.0	26	100	0	104	26	19	26	26	1.99
15841388--15841440	26	2.0	26	100	0	106	26	20	26	26	1.99
15842301--15842353	26	2.0	26	88	0	79	28	20	22	28	1.99
15843191--15843243	26	2.0	26	96	0	97	28	20	24	26	1.99
15844076--15844128	26	2.0	26	88	0	79	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15841158--15846112	885	5.6	882	86	3	6475	25	24	24	25	2.00
15844957--15845008	26	2.0	26	96	0	95	28	19	25	26	1.98
15845843--15845895	26	2.0	26	96	0	97	26	15	26	32	1.95
15845869--15846244	159	2.4	159	84	2	488	22	27	30	19	1.98
15846886--15846938	26	2.0	26	92	0	88	28	15	24	32	1.95
15846912--15847286	159	2.4	159	84	2	502	23	27	29	20	1.98
15847938--15847990	26	2.0	26	88	0	79	28	18	22	30	1.98
15847656--15848566	468	1.9	468	86	2	1276	24	27	26	22	2.00
15848124--15862593	892	16.4	888	86	3	18481	25	23	24	26	2.00
15850179--15850231	26	2.0	26	96	0	97	28	20	26	24	1.99
15852818--15852870	26	2.0	26	100	0	106	30	20	22	26	1.98
15853714--15853765	25	2.0	26	92	3	88	28	17	25	28	1.97
15854602--15854653	25	2.0	26	88	3	79	25	17	26	30	1.97
15855480--15855531	26	2.0	25	88	3	77	28	21	23	26	1.99
15856369--15856422	26	2.1	26	96	0	99	27	20	25	25	1.99
15857258--15857308	26	2.0	26	96	0	93	29	19	23	27	1.98
15862492--15862544	26	2.0	26	85	0	70	30	20	20	28	1.98
15862772--15862824	26	2.0	26	88	0	79	32	18	22	26	1.97
15863486--15863538	26	2.0	26	89	7	81	32	20	20	26	1.98
15862590--15864332	722	2.4	700	81	8	1946	25	25	24	25	2.00
15864392--15865898	729	2.1	729	87	2	2186	26	22	23	27	2.00
15871015--15871068	26	2.1	26	96	0	99	29	22	24	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15871904--15871956	26	2.0	26	96	0	97	26	18	26	28	1.98
15872805--15872857	26	2.0	26	96	0	97	26	18	28	26	1.98
15874616--15874668	26	2.0	26	88	0	79	30	16	26	26	1.97
15868769--15878063	888	10.5	887	79	7	9047	25	23	24	26	2.00
15877251--15877303	26	2.0	26	96	0	97	28	20	24	26	1.99
15879804--15879856	26	2.0	26	88	0	79	30	18	22	28	1.98
15881560--15881612	26	2.0	26	96	0	97	26	15	26	32	1.95
15879292--15882474	888	3.6	886	85	4	4208	25	24	23	26	2.00
15882642--15882694	26	2.0	26	96	0	97	24	20	28	26	1.99
15884446--15884498	26	2.0	26	89	7	81	28	20	26	24	1.99
15885448--15885500	26	2.0	26	96	0	97	28	20	24	26	1.99
15886339--15886388	26	1.9	26	87	0	73	30	18	22	30	1.97
15887222--15887274	26	2.0	26	89	7	81	28	20	22	28	1.99
15888103--15888153	26	2.0	26	96	0	93	29	15	27	27	1.96
15888985--15889037	26	2.0	26	96	0	97	28	20	24	26	1.99
15889875--15889927	26	2.0	26	92	0	88	30	20	20	28	1.98
15890763--15890815	26	2.0	26	92	0	88	28	18	24	28	1.98
15885217--15891704	888	7.3	887	87	2	8917	25	24	24	25	2.00
15891652--15891710	26	2.3	26	93	0	100	30	16	23	28	1.97
15892360--15892412	26	2.0	26	88	0	79	28	18	22	30	1.98
15891715--15893490	887	2.0	892	88	2	2676	25	25	24	25	2.00
15893273--15893648	159	2.4	159	85	2	470	24	29	28	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15893432--15896313	886	3.2	888	86	2	4005	25	25	24	25	2.00
15896072--15896123	25	2.0	26	92	3	88	30	21	21	26	1.98
15896098--15896472	159	2.4	158	83	0	435	24	29	28	18	1.98
15897121--15897173	26	2.0	26	96	0	97	28	18	26	26	1.98
15898011--15898072	26	2.4	25	84	10	81	25	25	24	24	2.00
15898909--15898958	26	1.9	26	91	0	82	32	16	22	30	1.95
15899773--15899824	26	2.0	26	96	0	95	28	19	25	26	1.98
15901537--15901589	26	2.0	26	100	0	106	26	20	26	26	1.99
15902269--15902321	26	2.0	26	88	0	79	28	18	22	30	1.98
15903149--15903200	25	2.0	26	92	3	88	30	21	21	26	1.98
15903177--15903543	159	2.3	158	83	4	443	24	29	26	19	1.98
15904198--15904250	26	2.0	26	100	0	106	26	20	26	26	1.99
15904177--15904594	185	2.3	185	88	0	629	21	28	28	21	1.99
15905266--15905316	26	2.0	26	92	0	84	35	15	23	25	1.94
15906157--15906209	26	2.0	26	85	0	70	28	18	22	30	1.98
15904354--15935534	889	35.4	881	80	7	28088	25	24	24	26	2.00
15907932--15907984	26	2.0	26	96	0	97	28	20	26	24	1.99
15908814--15908866	26	2.0	26	96	0	97	26	20	24	28	1.99
15910566--15910618	26	2.0	26	96	0	97	26	18	26	28	1.98
15911444--15911496	26	2.0	26	92	0	88	26	13	26	33	1.93
15913171--15913221	26	2.0	26	96	0	93	27	17	25	29	1.98
15914061--15914111	26	2.0	26	96	0	93	29	15	29	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15915827--15915879	26	2.0	26	92	0	88	26	16	26	30	1.97
15916703--15916755	26	2.0	26	96	0	97	26	20	24	28	1.99
15917590--15917639	26	1.9	26	100	0	100	28	20	28	24	1.99
15918471--15918523	26	2.0	26	96	0	97	30	18	24	26	1.98
15923744--15923796	26	2.0	26	85	0	70	24	18	28	28	1.98
15925438--15925490	26	2.0	26	96	0	97	26	20	28	24	1.99
15924627--15927702	878	3.6	823	84	6	3032	24	24	24	26	2.00
15926316--15926366	26	2.0	26	92	0	84	27	15	25	31	1.96
15927193--15927243	26	2.0	26	88	0	75	29	17	21	31	1.96
15928042--15928447	158	2.6	158	82	3	474	21	28	28	21	1.98
15929091--15929143	26	2.0	26	100	0	106	26	16	26	30	1.97
15929970--15930022	26	2.0	26	96	0	97	26	18	26	28	1.98
15925124--15935534	878	11.7	882	76	9	8237	25	24	24	25	2.00
15931740--15931789	26	1.9	26	95	0	91	28	18	28	26	1.98
15933501--15933553	26	2.0	26	88	0	79	32	15	24	28	1.95
15937294--15937356	16	3.9	16	77	8	65	20	6	28	44	1.76
15937750--15937799	17	3.0	16	77	8	55	70	4	2	24	1.15
15938510--15938552	17	2.5	17	88	3	59	4	2	11	81	0.93
15938509--15938555	18	2.6	17	86	6	67	6	2	10	80	0.96
15938761--15938801	12	3.4	12	79	0	55	12	2	46	39	1.54
15938734--15938811	24	3.2	24	90	3	111	17	3	46	32	1.67
15938851--15938891	8	4.9	8	82	11	55	0	0	14	85	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15938857--15938899	14	3.3	14	78	15	56	0	0	16	83	0.64
15938851--15938902	11	4.6	11	85	4	68	0	0	17	82	0.66
15938851--15938899	26	1.9	25	95	4	89	0	0	16	83	0.64
15941973--15942025	26	2.0	26	96	0	97	26	18	26	28	1.98
15939975--15949044	890	10.3	888	85	4	11485	25	24	24	25	2.00
15946345--15946397	26	2.0	26	92	0	88	26	18	24	30	1.98
15942863--15949044	889	7.0	888	85	3	8012	25	23	24	25	2.00
15947235--15947287	26	2.0	26	85	7	72	28	22	24	24	2.00
15949265--15949321	26	2.2	26	100	0	114	26	10	15	47	1.78
15948288--15950461	707	3.1	703	86	4	3131	25	23	24	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160