genome.fa.s334.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  25  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6536813--6536887	5	14.4	5	81	13	73	14	2	2	80	0.94
6536755--6536887	14	9.5	14	70	20	64	17	2	4	75	1.06
6536914--6537483	58	9.7	58	84	8	694	47	5	10	36	1.62
6537132--6537161	14	2.1	14	93	0	51	63	0	0	36	0.95
6537216--6537304	27	3.2	27	70	17	83	44	5	10	39	1.62
6539696--6539773	34	2.3	33	74	8	77	43	2	3	50	1.34
6550805--6550846	21	2.0	22	86	9	61	42	2	14	40	1.58
6552200--6552224	13	1.9	13	100	0	50	24	0	0	76	0.80
6552879--6552920	17	2.5	17	80	3	50	33	0	2	64	1.07
6552898--6552956	13	4.5	13	72	6	57	42	1	0	55	1.09
6552956--6552996	22	1.9	22	95	5	75	34	4	2	58	1.32
6553311--6553360	25	2.0	24	92	3	82	36	0	0	64	0.94
6553287--6553385	37	2.9	33	73	24	89	41	0	0	58	0.98
6556713--6557097	174	2.2	176	90	3	589	30	13	27	28	1.94
6562395--6562426	2	16.5	2	93	6	57	0	46	0	53	1.00
6572409--6572435	2	13.5	2	100	0	54	51	0	0	48	1.00
6576214--6576242	2	15.0	2	92	7	51	51	0	48	0	1.00
6583421--6583591	85	2.0	84	91	1	279	35	16	16	30	1.92
6587017--6587067	26	2.0	26	96	0	93	23	11	17	47	1.81
6592008--6592040	9	3.8	9	88	4	50	0	12	0	87	0.53
6592009--6592040	13	2.5	13	89	0	55	0	9	0	90	0.45
6592433--6592507	29	2.6	30	83	8	93	58	1	2	37	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6592438--6592523	29	2.9	29	79	8	86	59	1	2	37	1.18
6597383--6597608	94	2.4	94	79	2	231	40	21	11	26	1.87
6598830--6598870	21	2.1	19	86	9	55	65	0	17	17	1.27
6600720--6600754	18	1.9	18	88	0	52	40	0	2	57	1.14
6611936--6611969	2	17.5	2	93	6	61	50	0	0	50	1.00
6616462--6616628	83	2.0	83	96	0	307	31	23	4	40	1.74
6619019--6619078	31	1.9	31	93	0	102	31	16	15	36	1.90
6623915--6623949	16	2.2	16	100	0	70	20	0	34	45	1.51
6639148--6639188	19	2.2	18	86	4	55	56	2	2	39	1.26
6640153--6640186	3	11.3	3	100	0	68	67	0	0	32	0.91
6641270--6641304	13	2.6	13	90	4	52	80	2	8	8	1.01
6641924--6641967	22	2.0	22	90	0	70	34	11	11	43	1.77
6642115--6642199	23	3.6	23	85	4	107	16	25	16	41	1.89
6645846--6645889	22	2.0	22	95	0	79	31	11	13	43	1.80
6647389--6647416	2	14.0	2	100	0	56	50	0	50	0	1.00
6649886--6649924	6	6.0	6	85	14	51	48	0	5	46	1.24
6653949--6654015	31	2.2	31	89	5	100	46	5	1	46	1.36
6654071--6654194	64	1.9	64	81	12	148	37	2	3	56	1.29
6654157--6654216	18	3.3	18	74	6	59	40	1	1	56	1.19
6654147--6654217	35	1.9	38	86	8	103	38	1	2	57	1.22
6654645--6654709	31	2.1	31	82	5	78	60	0	0	40	0.97
6659730--6659864	67	2.0	67	85	7	186	19	8	11	61	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6663411--6663467	15	3.7	15	74	4	60	77	1	14	7	1.06
6663403--6663466	31	2.1	31	87	0	92	75	3	10	10	1.17
6664250--6664323	32	2.4	31	81	6	78	37	4	12	45	1.60
6664407--6664468	32	1.9	32	83	0	79	51	3	4	40	1.39
6665073--6665341	139	1.9	139	91	1	441	39	11	6	43	1.67
6666164--6666224	18	3.2	17	70	20	50	52	1	1	44	1.20
6666173--6666239	21	3.3	21	74	19	79	46	0	2	50	1.16
6666164--6666239	39	1.9	39	94	0	134	48	1	2	47	1.24
6666238--6666274	18	2.2	18	90	9	60	56	2	0	40	1.13
6666205--6666273	29	2.4	28	79	11	77	50	1	1	46	1.19
6666314--6666383	10	7.0	11	75	14	55	44	1	2	51	1.25
6666314--6666372	29	2.1	28	90	3	91	44	1	3	50	1.28
6666398--6666500	47	2.2	46	84	8	129	45	8	0	44	1.41
6666635--6666708	29	2.6	29	73	2	69	51	2	1	44	1.24
6666653--6666734	10	8.4	10	75	14	64	52	2	1	43	1.22
6666710--6666780	22	3.0	23	70	29	60	60	1	1	36	1.14
6666877--6667022	21	7.2	21	72	9	115	50	0	2	45	1.20
6666875--6666978	39	2.6	41	81	7	115	50	0	2	47	1.16
6668208--6668343	68	2.0	68	91	0	218	27	23	19	28	1.99
6674773--6674895	4	30.2	4	66	23	53	47	0	2	49	1.20
6674773--6674844	23	3.0	24	84	9	94	45	0	1	52	1.09
6674774--6674895	23	5.2	23	72	19	83	47	0	2	49	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6674856--6674900	24	1.9	23	86	4	63	51	0	0	48	1.00
6674795--6674965	67	2.7	64	79	12	156	50	1	1	46	1.19
6674907--6674973	21	3.3	21	70	19	61	49	0	2	47	1.16
6674940--6674994	29	2.0	29	82	13	71	49	0	1	49	1.11
6675156--6675306	46	3.2	46	74	16	137	48	7	0	43	1.35
6675362--6675494	57	2.3	55	81	10	135	50	3	2	43	1.32
6675430--6675714	10	28.4	10	64	19	53	50	2	2	44	1.28
6675544--6675592	19	2.6	19	75	12	55	57	2	2	38	1.22
6675604--6675655	23	2.3	23	83	3	70	55	1	5	36	1.35
6675644--6675790	21	7.2	21	74	10	117	48	1	2	47	1.21
6675686--6675737	20	2.7	18	78	21	52	50	0	1	48	1.12
6675754--6675802	21	2.3	21	89	0	71	51	2	6	40	1.38
6682735--6682807	34	2.1	34	97	0	137	49	8	28	13	1.71
6684326--6684397	23	3.0	24	84	9	94	45	0	1	52	1.09
6684463--6684527	21	3.2	21	71	20	66	46	1	1	50	1.20
6684494--6684548	29	2.0	29	82	13	71	49	0	1	49	1.11
6684572--6684615	21	2.2	21	84	8	56	52	0	4	43	1.22
6684710--6684744	18	1.9	18	88	0	52	48	8	0	42	1.33
6687801--6687827	14	1.9	14	100	0	54	51	0	11	37	1.37
6690679--6690711	8	4.2	8	84	7	50	75	3	0	21	0.93
6690683--6690714	15	2.2	14	94	5	55	75	3	0	21	0.95
6697865--6697925	15	4.1	15	78	16	56	40	1	1	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6698664--6698714	20	2.5	20	75	12	59	58	0	3	37	1.16
6698996--6699060	33	2.0	33	87	6	96	35	13	10	40	1.80
6699869--6699902	2	17.0	2	100	0	68	50	0	0	50	1.00
6703153--6703196	2	22.0	2	85	0	61	50	0	2	47	1.13
6708513--6708541	2	15.0	2	92	7	51	51	0	0	48	1.00
6714083--6714136	26	2.1	26	86	6	74	42	1	1	53	1.22
6714982--6715016	17	2.1	17	89	10	54	25	5	11	57	1.56
6714988--6715042	30	1.9	27	85	10	74	27	9	16	47	1.76
6715034--6715092	21	2.8	22	87	10	79	28	5	10	55	1.54
6715013--6715094	20	4.0	21	81	9	91	30	6	10	52	1.61
6716635--6716682	25	2.0	24	87	4	69	50	10	4	35	1.56
6716791--6716958	44	3.8	44	74	17	150	53	11	5	29	1.59
6716879--6716963	22	4.0	20	76	14	80	52	10	4	31	1.56
6719916--6719949	17	2.1	17	94	5	61	41	5	0	52	1.25
6721846--6721952	19	5.5	19	72	5	61	56	4	1	37	1.31
6722004--6722043	21	1.9	21	89	0	62	62	7	0	30	1.23
6722180--6722229	19	2.7	19	79	14	59	34	2	6	58	1.34
6722151--6722257	28	3.8	26	80	10	99	35	2	5	56	1.38
6722145--6722260	18	6.3	17	70	16	63	37	2	5	55	1.36
6722244--6722300	28	2.1	27	83	6	71	31	3	3	61	1.30
6722423--6722489	25	2.6	26	83	11	84	40	1	4	53	1.30
6730777--6730822	20	2.3	20	96	0	83	15	6	19	58	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6737966--6738153	93	2.0	93	93	2	324	19	9	15	55	1.67
6738417--6738458	22	1.9	22	90	0	66	45	9	11	33	1.73
6742101--6742166	26	2.6	26	87	2	89	40	16	24	18	1.90
6742378--6742419	22	1.9	22	90	0	66	45	9	11	33	1.73
6746542--6746607	30	2.2	31	86	10	93	39	1	0	59	1.07
6746809--6746852	21	2.0	22	83	12	56	31	0	2	65	1.05
6749520--6749565	13	3.5	13	82	11	67	41	0	0	58	0.98
6764038--6764152	60	1.9	59	80	5	133	72	3	5	19	1.19
6764064--6764152	4	22.5	4	71	19	62	70	4	4	20	1.22
6764407--6764579	40	4.2	40	78	10	163	43	15	13	27	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160