genome.fa.s334.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  123  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22893975--22894013	18	2.1	19	86	13	55	23	2	0	74	0.94
22893975--22894013	19	2.1	19	90	4	62	23	2	0	74	0.94
22898597--22898648	15	3.4	15	76	5	59	26	1	0	71	0.97
22899293--22899325	3	11.0	3	100	0	66	33	0	0	66	0.92
22902560--22902598	21	1.9	21	89	5	62	15	15	7	61	1.55
22903162--22903409	102	2.4	102	82	7	281	40	11	14	33	1.82
22903186--22903395	52	4.1	53	80	10	213	40	12	15	31	1.84
22903462--22903506	23	2.0	23	86	8	65	42	0	13	44	1.43
22903986--22904022	11	3.5	11	78	14	51	54	5	0	40	1.24
22904134--22904217	29	2.9	29	71	7	71	22	9	14	53	1.69
22904416--22904615	51	4.0	50	77	5	197	38	13	15	33	1.86
22906696--22906727	12	2.6	12	95	5	55	12	12	6	68	1.37
22909193--22909231	19	2.1	19	85	9	53	7	0	10	82	0.86
22921419--22921482	26	2.5	26	82	5	76	15	28	26	29	1.96
22921852--22921896	16	3.0	15	84	9	56	57	0	20	22	1.40
22921866--22921896	16	1.9	16	100	0	62	61	0	19	19	1.35
22922566--22922602	18	2.1	18	89	0	56	70	10	2	16	1.27
22922659--22922691	14	2.2	16	89	10	52	69	3	3	24	1.16
22932959--22933069	56	1.9	56	84	10	145	56	10	17	15	1.66
22933727--22934190	119	3.9	120	80	3	483	20	22	13	44	1.86
22933730--22934165	238	1.8	238	83	2	581	21	22	12	43	1.86
22933730--22934222	238	2.1	238	81	3	564	21	22	12	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22934346--22934431	26	3.3	26	78	12	70	23	23	23	30	1.99
22934514--22934568	9	6.4	8	93	4	65	32	1	0	65	1.03
22934524--22934569	3	15.3	3	100	0	92	32	0	0	67	0.91
22935086--22935127	20	2.1	20	86	0	57	19	2	14	64	1.39
22937036--22937084	26	2.0	24	84	8	62	20	4	2	73	1.10
22937166--22937206	15	2.7	15	100	0	82	75	7	0	17	1.02
22939949--22939987	15	2.6	14	84	8	51	43	5	0	51	1.24
22940032--22940080	15	3.5	15	71	18	52	30	0	0	69	0.89
22957050--22957095	24	1.9	24	90	0	74	50	15	8	26	1.73
22965159--22965233	21	3.6	21	76	15	66	40	0	1	58	1.06
22965224--22965293	27	2.8	24	77	10	70	50	0	1	48	1.09
22965226--22965286	27	2.3	27	85	5	79	47	0	1	50	1.10
22970903--22970965	24	2.5	24	82	10	74	66	0	1	31	1.01
22983505--22983548	19	2.3	19	88	0	61	22	9	0	68	1.18
22984246--22984284	16	2.4	16	86	0	60	82	5	0	12	0.83
22984253--22984282	11	2.8	11	95	5	53	86	0	0	13	0.57
22985127--22985152	3	8.7	3	100	0	52	69	0	0	30	0.89
22985231--22985322	26	3.6	26	80	2	87	27	17	26	29	1.97
22986330--22986372	17	2.5	17	92	0	68	55	4	2	37	1.33
22987993--22988089	48	2.0	48	95	0	176	24	23	17	34	1.96
22988276--22988318	21	2.0	21	95	0	77	41	0	9	48	1.35
22990366--22990453	34	2.6	34	76	7	97	30	17	12	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22993982--22994186	110	1.9	110	81	4	252	40	15	19	24	1.89
22994153--22994232	37	2.2	38	82	11	103	50	11	17	21	1.77
22993947--22994209	110	2.4	109	72	11	230	42	15	18	23	1.88
22994856--22995165	66	4.7	65	79	9	258	32	14	18	33	1.92
22994828--22995165	33	10.4	33	71	4	211	33	14	18	33	1.91
22994828--22995165	131	2.6	130	81	7	384	33	14	18	33	1.91
22995972--22996011	21	1.9	21	90	10	64	7	10	2	80	1.00
23000814--23000855	21	2.0	22	90	4	68	0	11	4	83	0.79
23001421--23001476	26	2.2	26	84	9	71	64	3	3	28	1.27
23002672--23002727	23	2.5	22	83	16	80	17	0	30	51	1.46
23002784--23002923	30	4.7	30	72	7	115	25	2	27	45	1.65
23002777--23002917	58	2.4	59	79	10	171	23	2	28	46	1.64
23002776--23002935	58	2.7	58	74	14	157	23	1	26	47	1.62
23003078--23003112	18	1.9	18	88	11	54	31	0	0	68	0.90
23004415--23004475	19	3.2	19	86	6	79	27	0	0	72	0.85
23004431--23004486	16	3.5	16	80	0	67	32	0	0	67	0.91
23004608--23004652	21	2.1	21	100	0	90	48	24	8	17	1.75
23005373--23005417	22	2.0	22	95	0	81	35	13	28	22	1.92
23006324--23007411	367	3.0	362	84	5	1388	35	10	11	43	1.75
23008127--23008189	28	2.2	29	91	5	101	25	0	20	53	1.45
23008141--23008208	28	2.5	28	85	2	84	23	2	22	51	1.61
23008233--23008284	25	2.1	25	88	0	77	21	9	23	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23015650--23015788	44	3.3	44	71	17	159	50	1	8	39	1.42
23015704--23015822	29	4.3	28	63	18	79	44	0	10	44	1.43
23015654--23015826	81	2.1	81	100	0	346	47	1	9	41	1.43
23015691--23015823	40	3.3	40	71	14	137	46	0	9	43	1.40
23015654--23015849	81	2.5	80	92	4	283	50	1	8	40	1.39
23016851--23016897	21	2.3	21	83	16	64	46	2	2	48	1.25
23017010--23017050	22	1.9	22	90	5	66	41	4	4	48	1.46
23017058--23017116	27	2.2	27	84	3	84	32	6	5	55	1.48
23017188--23017247	28	2.1	27	82	11	68	30	3	0	66	1.07
23017210--23017249	18	2.2	18	86	0	53	40	2	0	57	1.12
23017217--23017292	26	2.8	25	78	13	62	36	2	3	56	1.32
23025343--23025385	17	2.4	18	78	17	54	41	0	2	55	1.12
23048696--23048726	10	3.1	10	95	0	53	19	22	25	32	1.97
23050912--23050960	4	12.8	4	80	20	52	46	0	0	53	1.00
23050886--23050959	38	1.9	38	84	10	98	45	2	1	50	1.24
23050916--23050951	19	2.0	17	89	10	54	44	0	0	55	0.99
23053455--23053479	11	2.3	11	100	0	50	24	36	8	32	1.84
23054073--23054102	1	30.0	1	100	0	60	0	0	0	100	0.00
23054623--23054665	19	2.2	20	80	12	54	39	0	0	60	0.97
23060085--23060109	8	3.1	8	100	0	50	36	0	24	40	1.55
23063352--23063381	3	10.0	3	100	0	60	33	0	0	66	0.92
23069078--23069116	15	2.5	16	87	4	53	33	12	12	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23070818--23071539	241	3.0	237	81	7	751	40	12	9	37	1.76
23075359--23075390	14	2.3	14	94	0	55	0	31	0	68	0.90
23076792--23076840	12	4.2	11	85	12	62	83	2	12	2	0.82
23076797--23076850	24	2.2	25	90	3	83	79	3	14	1	0.95
23076793--23076853	24	2.5	23	82	12	77	80	3	14	1	0.92
23076914--23076955	21	1.9	23	90	9	70	69	7	11	11	1.37
23077958--23078017	26	2.3	26	79	0	66	31	18	16	33	1.93
23077980--23078031	20	2.6	21	81	9	63	30	15	15	38	1.88
23079007--23079050	7	6.4	7	86	5	63	86	9	2	2	0.75
23078979--23079045	27	2.5	27	80	7	73	80	8	2	7	0.99
23079007--23079050	20	2.1	21	87	4	63	86	9	2	2	0.75
23079917--23079946	15	2.1	14	93	6	51	36	0	0	63	0.95
23079946--23079989	21	2.2	21	92	8	74	50	0	0	50	1.00
23084574--23084625	25	2.1	24	85	3	68	15	1	26	55	1.50
23087181--23087299	58	2.1	58	93	0	202	36	17	25	21	1.95
23089379--23089449	22	3.2	21	81	13	81	59	0	2	38	1.12
23089460--23089484	13	1.9	13	100	0	50	88	0	8	4	0.64
23098505--23098582	24	3.3	24	75	18	74	66	3	0	29	1.09
23100233--23100261	2	14.5	2	100	0	58	48	0	0	51	1.00
23100569--23100600	2	16.0	2	100	0	64	50	0	50	0	1.00
23104433--23104476	16	2.8	16	89	3	63	65	0	0	34	0.93
23104651--23104690	21	1.9	19	85	14	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23104729--23104793	28	2.3	28	86	7	87	47	3	0	49	1.17
23104850--23104903	26	2.0	27	89	3	83	38	1	5	53	1.35
23105060--23105117	11	5.3	11	71	21	50	77	10	0	12	0.99
23105048--23105116	34	2.0	34	85	5	93	75	10	0	14	1.05
23105060--23105117	10	5.4	10	76	17	55	77	10	0	12	0.99
23106107--23106153	17	2.8	16	84	9	58	21	0	4	74	0.99
23106345--23106396	28	1.9	26	84	7	68	51	0	3	44	1.19
23106541--23106584	15	2.9	15	89	0	70	50	25	4	20	1.67
23106582--23106648	15	4.5	15	83	5	73	46	32	1	19	1.59
23106602--23106647	14	3.2	14	84	6	56	45	34	0	19	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160