genome.fa.s334.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  126  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23491892--23491994	45	2.3	43	84	10	145	36	14	13	34	1.86
23491904--23491996	46	2.0	46	93	2	161	35	12	12	38	1.82
23501068--23501113	22	2.1	22	95	0	83	19	28	10	41	1.85
23502263--23502334	16	4.4	16	80	3	54	79	0	15	5	0.91
23502264--23502302	17	2.3	17	81	0	51	87	0	12	0	0.55
23502296--23502334	8	4.9	8	93	0	69	74	0	15	10	1.07
23503586--23504116	40	13.0	41	90	6	769	22	17	22	37	1.94
23503586--23504116	81	6.5	81	90	5	763	22	17	22	37	1.94
23504123--23504210	9	9.7	9	75	14	65	82	10	0	6	0.82
23504127--23504216	16	5.7	15	80	11	83	83	8	0	7	0.82
23504124--23504203	1	80.0	1	73	0	52	85	8	0	6	0.76
23504177--23504217	6	7.0	6	78	15	50	82	4	0	12	0.81
23504993--23505063	31	2.3	31	85	0	97	26	23	23	25	2.00
23505124--23505161	20	1.9	20	88	0	58	31	23	18	26	1.97
23505490--23505535	24	1.9	24	86	0	65	6	4	6	82	0.94
23505634--23505972	57	5.7	57	83	9	430	44	8	13	33	1.75
23505632--23505972	119	2.8	119	90	3	508	44	8	13	33	1.74
23509501--23509538	3	12.7	3	100	0	76	34	0	0	65	0.93
23516375--23516400	3	8.7	3	100	0	52	34	0	0	65	0.93
23527225--23527287	30	2.2	27	76	15	72	39	34	11	14	1.81
23527267--23527393	30	4.1	30	75	9	112	40	31	14	12	1.84
23527265--23527364	33	3.1	33	68	23	86	42	32	13	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23527352--23527428	30	2.6	30	85	4	102	37	35	15	11	1.84
23528761--23529741	486	2.0	488	89	2	1506	39	17	9	33	1.82
23530347--23530448	3	36.0	3	75	21	87	34	1	3	59	1.27
23530347--23530448	8	12.0	9	76	20	87	34	1	3	59	1.27
23530347--23530448	5	18.0	6	80	13	87	34	1	3	59	1.27
23532440--23532536	39	2.5	39	80	8	110	18	13	5	62	1.48
23535251--23535279	14	2.1	14	100	0	58	65	6	6	20	1.40
23536491--23536726	121	2.0	121	83	3	305	19	21	15	44	1.87
23536997--23537197	86	2.3	86	81	1	242	29	18	16	35	1.93
23537526--23537663	60	2.3	60	81	2	152	23	28	12	35	1.91
23538172--23538288	3	41.0	3	83	16	133	35	2	1	60	1.20
23538139--23538295	12	13.7	11	75	19	76	35	4	3	56	1.35
23538136--23538296	21	7.4	20	76	15	112	35	4	3	57	1.34
23539164--23539242	7	10.4	7	72	17	52	15	1	6	77	1.03
23539155--23539196	21	2.0	22	90	4	68	14	2	2	80	0.90
23539164--23539236	16	4.6	16	77	6	60	15	1	6	76	1.05
23539155--23539242	24	3.9	22	72	18	74	14	2	5	77	1.05
23547360--23547413	27	2.0	26	85	3	72	22	7	12	57	1.60
23549634--23549692	26	2.2	26	77	19	68	42	1	15	40	1.57
23550740--23550860	34	3.6	34	79	8	138	44	9	11	33	1.74
23553074--23553107	3	11.3	3	100	0	68	67	0	0	32	0.91
23553629--23553741	34	3.4	33	75	3	100	30	8	22	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23553854--23553928	33	2.3	33	83	4	89	28	14	17	40	1.89
23555121--23555275	61	2.5	61	80	6	161	35	3	22	38	1.73
23556637--23556673	18	2.1	18	100	0	74	48	10	18	21	1.78
23558059--23558107	17	2.7	18	84	15	66	22	2	10	65	1.34
23558109--23558223	49	2.3	49	80	2	124	32	11	18	38	1.86
23558266--23558291	6	4.3	6	100	0	52	65	15	0	19	1.27
23558313--23558354	17	2.5	17	80	3	50	42	16	11	28	1.84
23560213--23560281	36	1.9	36	85	11	97	37	0	15	46	1.47
23560763--23560805	1	43.0	1	85	0	50	90	4	2	2	0.59
23560755--23560799	20	2.2	20	88	7	65	84	6	4	4	0.87
23560755--23560800	21	2.2	20	88	11	67	84	6	4	4	0.85
23560728--23560805	26	2.8	26	83	9	93	80	7	5	6	1.01
23560977--23561036	26	2.3	26	86	13	88	60	10	11	18	1.58
23565253--23565286	18	1.9	18	88	5	52	55	2	5	35	1.39
23565012--23565995	477	2.0	480	92	3	1642	46	3	4	45	1.42
23565622--23565658	19	1.9	19	88	0	56	40	5	2	51	1.39
23565764--23565836	26	3.0	23	77	15	65	53	1	4	41	1.28
23566025--23566068	17	2.5	18	82	10	56	20	4	4	70	1.23
23566025--23566094	18	4.0	17	75	10	61	22	4	4	68	1.25
23566967--23567034	30	2.2	30	82	7	84	61	8	4	25	1.44
23569318--23569368	6	8.5	6	80	0	57	45	3	5	45	1.46
23569318--23569368	4	12.8	4	78	0	57	45	3	5	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23571986--23572024	2	20.0	2	89	5	62	48	0	2	48	1.15
23576996--23577034	15	2.6	15	84	8	53	38	0	0	61	0.96
23576972--23577034	30	2.1	29	83	13	76	36	1	3	58	1.23
23584208--23584299	8	10.8	8	68	17	51	73	3	3	19	1.10
23584210--23584293	17	4.9	15	74	22	60	73	3	2	20	1.09
23584245--23584294	26	1.9	26	88	8	75	76	4	0	20	0.95
23587735--23587942	104	2.0	105	95	0	373	45	16	12	25	1.83
23597539--23597567	2	14.5	2	100	0	58	48	0	0	51	1.00
23604252--23604311	24	2.6	22	82	17	61	41	1	0	56	1.09
23605357--23605395	20	2.0	21	90	10	64	51	0	0	48	1.00
23607807--23607880	29	2.6	30	82	8	91	39	6	2	51	1.43
23607834--23607925	29	3.1	28	81	7	87	41	8	1	48	1.41
23607834--23607948	30	3.9	30	80	5	119	40	6	2	49	1.43
23608020--23608057	20	1.9	20	89	10	60	63	0	0	36	0.95
23610975--23611009	17	1.9	17	88	11	52	62	0	0	37	0.95
23616312--23616391	38	2.1	39	80	13	96	37	10	6	46	1.63
23616325--23616404	38	2.1	38	95	4	144	32	12	7	47	1.69
23618643--23618828	73	2.5	73	80	8	191	24	20	21	33	1.97
23620269--23620306	19	2.1	19	85	9	53	36	18	7	36	1.80
23621862--23621891	15	2.0	15	93	0	51	26	3	0	70	1.03
23624582--23624608	12	2.2	12	100	0	54	44	0	0	55	0.99
23625073--23625247	80	2.2	80	77	5	174	25	10	7	57	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23625615--23625646	16	2.0	16	93	0	55	6	6	15	71	1.26
23627218--23627266	2	25.0	2	80	12	57	55	2	0	42	1.11
23628086--23628139	3	18.0	3	96	0	99	31	0	1	66	1.02
23635401--23635457	29	2.0	29	89	0	87	49	1	3	45	1.29
23636678--23636726	16	3.1	16	75	13	57	48	2	0	48	1.12
23642210--23642270	3	20.7	3	96	3	115	65	0	0	34	0.93
23642786--23642815	10	3.1	10	95	4	53	40	0	0	60	0.97
23649905--23649938	6	5.7	6	92	0	59	55	0	0	44	0.99
23649903--23649938	18	2.0	18	100	0	72	55	0	0	44	0.99
23650328--23650368	18	2.3	18	100	0	82	36	0	31	31	1.58
23650495--23650543	25	1.9	26	91	4	82	40	10	2	46	1.49
23652717--23652761	2	22.5	2	100	0	90	48	0	51	0	1.00
23653918--23653944	6	4.5	6	100	0	54	18	66	14	0	1.25
23665889--23665934	19	2.4	18	82	10	56	32	15	17	34	1.91
23665933--23665971	19	2.1	19	90	0	60	38	10	10	41	1.73
23667832--23667919	11	7.3	12	67	22	51	28	1	1	69	1.03
23667839--23667921	25	3.2	26	75	21	86	27	1	1	69	1.03
23668303--23668336	16	2.1	16	88	0	50	8	8	0	82	0.85
23668298--23668343	23	2.0	23	91	0	74	13	8	0	78	0.97
23668471--23668527	23	2.5	22	75	10	62	28	24	19	28	1.98
23668676--23668755	33	2.5	32	78	13	83	38	7	13	40	1.73
23668676--23668759	32	2.6	32	81	9	89	36	7	13	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23669129--23669195	22	3.0	22	76	8	73	28	17	19	34	1.95
23670222--23670247	5	5.2	5	100	0	52	0	19	0	80	0.71
23669938--23670548	310	2.0	310	98	0	1177	35	14	13	36	1.85
23670531--23670606	20	3.9	19	79	11	75	5	17	1	76	1.04
23670532--23670589	8	6.9	8	75	16	55	1	15	1	81	0.86
23670532--23670592	26	2.4	25	83	8	79	1	16	1	80	0.88
23670565--23670621	29	1.9	30	85	3	80	8	17	0	73	1.07
23670575--23670612	20	1.9	20	84	10	51	7	18	0	73	1.06
23673632--23673683	23	2.2	24	82	3	61	63	11	3	21	1.43
23681766--23681801	2	19.5	2	83	16	51	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160