genome.fa.s334.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  107  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20237747--20237842	19	5.1	18	72	12	68	12	9	0	78	0.97
20237747--20237850	18	5.6	17	73	21	68	12	9	0	77	0.98
20242192--20242573	205	1.9	203	81	11	462	37	8	6	47	1.59
20242597--20242647	22	2.3	22	83	6	59	74	5	0	19	1.02
20243489--20243540	25	2.0	27	85	7	72	36	0	1	61	1.07
20243733--20243766	2	17.5	2	93	6	61	52	0	0	47	1.00
20261895--20261949	20	2.8	21	79	17	64	47	0	0	52	1.00
20262936--20262972	17	2.1	18	90	5	58	18	0	2	78	0.87
20263428--20263472	9	5.2	9	82	12	51	0	13	6	80	0.91
20264493--20264517	11	2.3	11	100	0	50	44	0	0	56	0.99
20264834--20264879	16	2.6	18	80	13	51	67	4	0	28	1.10
20266351--20266400	21	2.4	21	87	9	68	30	2	2	66	1.14
20266497--20266542	24	1.9	24	82	8	58	56	0	0	43	0.99
20266579--20266747	66	2.6	65	86	9	236	28	6	4	60	1.40
20268400--20268446	17	3.1	16	85	14	64	19	0	6	74	1.03
20269886--20269938	24	2.3	23	84	9	72	75	0	24	0	0.80
20269889--20269942	18	2.9	19	81	5	67	77	0	22	0	0.76
20269938--20269974	15	2.4	16	90	4	58	78	0	0	21	0.75
20270600--20270720	34	3.6	34	83	5	138	42	18	11	27	1.84
20270600--20270706	34	3.1	34	85	4	142	44	15	12	27	1.82
20270757--20270802	22	2.1	22	83	0	56	30	15	17	36	1.91
20270787--20270825	18	2.0	20	85	9	55	41	5	5	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20270849--20271046	103	1.9	101	79	6	220	41	17	13	26	1.87
20270849--20270968	35	3.5	35	70	3	91	44	19	9	27	1.81
20270857--20271001	68	2.1	68	77	7	152	40	20	11	27	1.87
20270981--20271067	33	2.6	33	81	3	113	36	14	18	29	1.91
20276995--20277075	18	4.6	18	75	14	71	24	0	1	74	0.90
20276989--20277076	26	3.3	26	76	13	81	27	0	1	71	0.93
20277003--20277079	16	4.6	16	73	17	66	24	0	1	74	0.90
20277132--20277184	24	2.2	24	82	3	61	24	3	1	69	1.15
20278110--20278157	9	5.3	9	85	9	71	27	0	2	70	0.98
20278110--20278187	27	2.9	26	80	17	81	24	0	5	70	1.07
20278110--20278158	19	2.7	19	93	6	84	26	0	2	71	0.97
20278573--20278687	32	3.5	31	77	10	122	32	14	14	38	1.87
20278572--20278687	33	3.6	31	73	18	110	32	14	14	37	1.87
20279974--20280019	19	2.3	21	82	14	62	4	21	0	73	1.00
20284296--20284347	25	2.0	27	81	11	63	30	1	9	57	1.42
20285951--20285981	12	2.6	12	94	0	53	0	6	3	90	0.55
20286421--20286519	20	4.9	20	70	20	66	23	1	3	72	1.04
20286418--20286477	27	2.3	26	80	11	68	23	1	0	75	0.90
20286495--20286521	11	2.5	11	100	0	54	22	0	0	77	0.76
20291581--20291624	10	4.4	10	91	0	61	40	0	6	52	1.28
20291589--20291623	2	17.5	2	93	0	61	45	0	2	51	1.16
20293624--20293823	97	2.0	99	82	6	244	34	23	16	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20295941--20295984	22	2.0	22	90	0	70	43	13	9	34	1.76
20311266--20311378	31	3.8	30	80	11	110	44	42	2	10	1.53
20311267--20311378	59	1.9	60	83	10	151	44	41	2	10	1.53
20311486--20311554	35	2.0	35	86	11	97	27	15	8	47	1.75
20311533--20311575	21	2.1	20	83	12	52	23	16	13	46	1.83
20311819--20311875	26	2.2	27	84	6	73	54	7	3	35	1.45
20318017--20318048	16	2.0	16	100	0	64	31	6	12	50	1.65
20322477--20322858	49	7.8	49	75	9	237	31	15	13	40	1.86
20322477--20322858	98	3.9	95	72	11	274	31	15	13	40	1.86
20325253--20325334	37	2.2	38	83	12	109	47	34	1	17	1.55
20325341--20325377	17	2.1	18	90	5	58	45	40	0	13	1.43
20326386--20326433	23	2.0	24	84	4	62	10	12	8	68	1.39
20326576--20326615	21	1.9	21	84	0	53	35	10	5	50	1.58
20326576--20326616	22	1.9	21	85	5	55	34	9	4	51	1.56
20329696--20329729	16	2.1	17	88	5	52	11	11	8	67	1.42
20336906--20336962	11	5.0	11	89	6	78	21	0	10	68	1.19
20336906--20336961	23	2.5	23	91	2	87	21	0	8	69	1.15
20336906--20336962	6	10.0	6	88	11	75	21	0	10	68	1.19
20336979--20337022	19	2.4	19	92	3	72	63	9	11	15	1.51
20337008--20337046	19	2.0	20	90	5	62	84	2	5	7	0.84
20337347--20337387	21	1.9	22	90	5	66	12	0	21	65	1.25
20337773--20337840	27	2.5	27	70	13	68	44	16	4	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20338501--20338543	19	2.1	22	87	12	65	46	2	2	48	1.27
20339009--20339059	21	2.3	22	83	6	59	49	1	0	49	1.12
20339012--20339060	12	4.3	12	72	15	50	44	2	0	53	1.12
20346874--20347918	347	3.0	347	98	0	2036	33	16	17	32	1.93
20354813--20354844	9	3.6	9	95	0	55	59	0	40	0	0.97
20355116--20355188	29	2.4	30	82	11	78	41	1	5	52	1.33
20355795--20355887	29	3.3	29	83	3	91	26	6	10	55	1.58
20355815--20355887	29	2.5	29	86	0	101	28	6	10	53	1.61
20359883--20359918	14	2.5	15	90	4	56	72	16	0	11	1.12
20362753--20362782	7	4.1	7	95	4	51	30	0	0	70	0.88
20362753--20362794	14	2.7	16	85	10	52	30	0	0	69	0.89
20368947--20369067	60	2.0	61	84	7	158	29	23	6	39	1.80
20375242--20375289	22	2.1	23	96	3	89	52	0	0	47	1.00
20378532--20378573	18	2.3	18	80	8	50	42	0	7	50	1.30
20379942--20379990	25	2.0	24	88	4	71	53	0	0	46	1.00
20381897--20381925	15	1.9	15	100	0	58	48	0	3	48	1.18
20382035--20382096	26	2.3	26	86	8	81	50	0	4	45	1.23
20383073--20383099	2	13.5	2	100	0	54	51	0	0	48	1.00
20389173--20389301	20	6.6	19	71	7	82	20	8	21	49	1.75
20389193--20389234	19	2.2	19	86	4	57	21	9	21	47	1.79
20389431--20389456	3	8.7	3	100	0	52	30	0	0	69	0.89
20389635--20389686	13	4.0	14	76	16	58	30	1	0	67	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20389633--20389686	27	2.0	26	89	3	81	31	1	0	66	1.02
20390474--20390512	16	2.4	17	86	4	53	12	10	7	69	1.37
20390991--20391109	31	3.9	31	72	12	86	39	14	24	21	1.91
20391176--20391244	32	2.2	31	81	2	75	31	8	17	42	1.80
20391434--20391511	33	2.4	32	80	2	84	30	12	12	43	1.81
20391496--20391605	32	3.4	32	78	10	109	27	13	20	39	1.90
20391465--20391605	64	2.2	64	82	9	164	27	14	19	39	1.90
20395203--20395241	18	2.1	19	85	4	53	76	0	20	2	0.90
20399646--20400132	61	8.2	60	84	7	575	35	11	7	45	1.68
20399646--20400132	180	2.7	179	87	7	661	35	11	7	45	1.68
20400135--20400218	5	16.4	5	74	17	50	79	3	4	11	1.01
20400148--20400203	14	4.2	13	80	13	60	80	3	5	10	1.00
20401264--20401364	11	9.5	11	72	18	56	79	0	0	19	0.79
20401249--20401369	29	4.4	26	78	14	102	79	0	2	18	0.84
20401243--20401369	44	2.9	45	86	8	163	78	0	2	18	0.85
20401251--20401362	5	21.8	5	80	14	106	78	0	2	18	0.87
20401519--20401583	9	7.6	8	77	16	60	12	0	4	83	0.80
20401520--20401583	17	3.7	17	81	10	67	12	0	4	82	0.81
20403749--20403793	22	2.2	19	84	11	54	77	2	2	17	0.97
20408182--20408224	15	2.8	16	79	13	54	27	13	2	55	1.51
20410577--20410635	5	11.8	5	79	13	50	74	0	22	3	0.96
20411822--20411859	5	7.8	5	91	5	60	86	0	13	0	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20413630--20413948	33	9.7	32	70	11	162	34	18	15	31	1.92
20414146--20414212	34	2.0	32	88	5	98	34	14	13	37	1.86
20414415--20414457	23	1.9	22	85	4	59	39	18	18	23	1.92
20414596--20414666	20	3.4	20	74	14	63	78	12	1	7	1.00
20415174--20415517	152	2.3	149	79	10	381	31	11	12	45	1.76
20415667--20415699	12	2.8	12	100	0	66	27	21	9	42	1.83
20417075--20417108	3	11.3	3	93	0	59	64	2	0	32	1.08
20423724--20423761	20	1.9	20	88	0	58	34	13	10	42	1.78
20424276--20424308	10	3.0	11	86	13	50	60	9	3	27	1.42
20440288--20440346	27	2.1	27	84	9	75	40	1	0	57	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160