genome.fa.s334.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  91  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17167537--17167575	13	3.0	13	80	0	51	41	38	2	17	1.64
17169071--17169114	5	8.0	5	83	14	52	77	0	2	20	0.88
17169069--17169125	18	3.3	17	81	13	64	75	0	7	17	1.02
17169683--17169824	51	2.9	51	78	10	152	36	18	8	36	1.81
17169693--17169824	47	2.7	48	75	15	128	37	19	7	35	1.80
17170768--17170928	69	2.3	69	83	2	207	40	14	16	27	1.88
17170994--17171042	17	2.9	17	81	0	53	42	10	22	24	1.84
17171967--17172080	20	6.0	18	81	12	122	0	8	3	86	0.71
17171967--17172080	19	5.8	19	85	9	115	0	8	3	86	0.71
17171964--17172080	17	6.6	17	79	13	112	0	9	3	86	0.73
17171967--17172067	1	101.0	1	76	0	94	0	6	3	88	0.68
17172963--17172989	4	6.8	4	100	0	54	77	0	0	22	0.76
17178378--17178416	19	2.2	18	86	9	53	30	2	0	66	1.05
17178925--17178966	21	2.0	21	86	9	59	52	0	4	42	1.22
17181065--17181579	133	3.9	127	79	10	443	42	8	9	38	1.69
17185273--17185312	21	1.9	21	84	0	53	35	32	2	30	1.71
17195819--17195858	18	2.2	18	86	8	55	77	7	12	2	1.07
17198399--17198438	20	2.0	21	85	14	57	17	7	5	70	1.30
17208906--17208935	10	3.0	10	100	0	60	40	10	10	40	1.72
17208920--17210729	162	11.2	161	74	8	1342	42	15	9	32	1.80
17209162--17210732	322	4.9	322	85	2	1838	42	15	9	31	1.80
17209160--17210807	646	2.6	645	83	3	1892	42	15	9	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17214209--17214262	21	2.6	21	82	5	56	38	20	7	33	1.80
17219144--17219219	22	3.5	22	91	7	111	48	0	1	50	1.09
17219204--17219243	16	2.7	14	88	7	53	55	0	0	45	0.99
17219209--17219245	8	4.6	8	86	0	56	56	0	0	43	0.99
17219209--17219260	26	2.1	24	85	7	68	59	0	0	40	0.97
17219206--17219253	14	3.3	14	80	11	51	60	0	0	39	0.97
17222656--17222735	6	12.8	6	76	6	61	26	5	6	62	1.40
17222650--17222701	24	2.2	24	82	0	59	23	5	9	61	1.48
17222663--17222756	18	5.1	17	75	12	62	24	3	6	65	1.30
17223159--17223238	34	2.4	34	93	2	135	42	21	20	16	1.89
17224868--17224913	20	2.3	20	92	7	76	32	8	10	47	1.69
17228577--17228620	18	2.5	18	79	17	56	75	2	22	0	0.92
17230052--17230129	34	2.3	34	82	6	97	44	21	19	14	1.85
17231411--17231452	13	3.1	13	86	10	57	14	9	7	69	1.37
17231532--17231581	25	2.0	26	84	11	68	20	6	10	64	1.45
17231677--17231738	20	3.2	20	81	6	74	35	1	8	54	1.39
17231763--17231812	26	1.9	26	84	8	66	36	8	10	46	1.67
17231789--17231836	20	2.4	20	82	6	62	31	6	12	50	1.65
17233468--17233592	15	8.3	15	71	13	69	33	8	17	40	1.81
17238898--17238926	2	14.5	2	100	0	58	0	48	0	51	1.00
17239547--17239580	17	2.0	17	100	0	68	29	5	11	52	1.61
17240538--17240600	32	2.0	32	93	0	108	49	1	12	36	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17241258--17241521	141	1.9	141	94	0	465	37	16	14	31	1.89
17245815--17245848	14	2.4	14	90	0	50	55	2	11	29	1.50
17246066--17246106	19	2.2	19	86	0	55	26	4	2	65	1.25
17247252--17247317	27	2.3	29	82	7	91	13	3	43	39	1.60
17249344--17249379	18	2.0	18	100	0	72	16	38	11	33	1.84
17263192--17263394	79	2.6	79	83	3	239	32	25	12	30	1.93
17267733--17267873	49	2.9	48	80	4	149	36	26	17	20	1.94
17267676--17267881	48	4.2	49	75	9	181	38	25	16	20	1.92
17270573--17270597	4	6.2	4	100	0	50	76	0	24	0	0.80
17273640--17273693	22	2.5	22	78	0	63	35	9	18	37	1.83
17274228--17274289	27	2.3	27	85	0	79	43	11	19	25	1.84
17275464--17275507	17	2.7	15	86	10	61	4	11	2	81	0.92
17275464--17275507	9	5.4	8	82	12	54	4	11	2	81	0.92
17283302--17283327	3	8.7	3	100	0	52	34	30	0	34	1.58
17293148--17293190	21	2.1	20	87	12	61	48	0	18	32	1.48
17296764--17296837	38	1.9	38	88	0	112	32	9	28	29	1.88
17296863--17296911	20	2.5	20	100	0	98	34	12	6	46	1.66
17302545--17302579	10	3.4	10	84	7	52	8	8	2	80	1.01
17305615--17305656	19	2.2	19	100	0	84	40	9	26	23	1.85
17307573--17307650	39	2.0	39	92	0	129	51	14	5	29	1.63
17310551--17310594	21	2.2	20	84	11	56	56	2	0	40	1.11
17313012--17313036	13	1.9	13	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17313176--17313354	71	2.6	69	81	3	171	43	8	5	43	1.56
17348130--17348158	2	14.5	2	100	0	58	0	48	0	51	1.00
17357524--17357575	6	8.0	7	87	8	58	53	42	0	3	1.19
17357524--17357575	13	4.1	13	85	5	70	53	42	0	3	1.19
17357524--17357569	6	7.3	6	92	2	65	54	43	0	2	1.12
17357521--17357584	19	3.4	19	80	8	76	46	45	1	6	1.37
17357524--17357687	7	25.1	7	73	10	73	43	36	1	18	1.58
17357695--17357729	18	1.9	18	88	0	52	45	40	0	14	1.45
17359465--17359650	93	2.0	93	100	0	372	50	13	12	22	1.76
17366209--17366317	52	2.1	52	92	0	191	32	17	12	37	1.88
17381700--17381752	26	2.0	26	89	7	81	15	9	28	47	1.76
17385121--17385155	16	2.2	16	100	0	70	51	11	25	11	1.71
17403949--17404010	31	2.0	31	100	0	124	32	19	9	38	1.84
17411508--17411971	59	7.9	57	82	11	537	34	13	6	44	1.70
17411508--17411974	119	4.0	119	92	5	690	35	13	7	44	1.71
17411980--17412009	8	3.6	8	95	4	51	90	0	0	10	0.47
17411979--17412009	9	3.6	9	91	8	55	90	0	0	9	0.46
17411978--17412028	6	8.8	6	85	10	54	82	0	3	13	0.81
17412071--17412103	3	10.7	3	93	6	57	66	0	3	30	1.06
17417507--17417569	27	2.4	26	78	2	63	47	0	15	36	1.46
17417556--17418054	250	2.0	250	86	1	705	37	12	8	41	1.73
17421939--17422022	41	2.0	41	93	0	141	22	26	11	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17424036--17424073	19	2.0	20	85	10	53	28	0	0	71	0.87
17424056--17424115	12	4.8	13	82	10	72	36	1	5	56	1.31
17424056--17424114	25	2.4	25	94	0	100	37	1	3	57	1.25
17427051--17427088	20	1.9	20	88	0	58	39	15	10	34	1.82
17434477--17434666	65	3.0	62	80	6	200	36	12	8	42	1.74
17438166--17438218	19	2.9	17	78	13	61	58	0	0	41	0.98
17446554--17446759	102	2.0	102	94	0	358	41	5	20	32	1.76
17449006--17449085	34	2.4	34	86	0	115	42	11	10	36	1.74
17449787--17449837	24	2.1	24	96	0	93	33	0	1	64	1.05
17450628--17450801	69	2.5	69	83	4	201	22	3	20	54	1.60
17450688--17450848	68	2.3	69	79	6	173	22	4	21	51	1.66
17452175--17452210	17	2.2	17	90	5	56	61	13	2	22	1.46
17454695--17454786	48	1.9	48	81	0	112	25	14	13	47	1.79
17458181--17458400	62	3.5	62	74	11	191	38	13	14	34	1.84
17458182--17458400	63	3.5	62	74	9	196	38	13	13	34	1.84
17459999--17460070	4	18.0	4	77	16	53	25	4	1	69	1.14
17459990--17460032	19	2.3	19	83	0	59	25	9	0	65	1.22
17459999--17460051	15	3.3	17	82	17	69	28	3	0	67	1.07
17460156--17460669	59	8.6	59	83	5	597	44	8	12	34	1.73
17460166--17460669	121	4.2	119	81	6	599	45	8	12	33	1.73
17460166--17460668	238	2.1	237	83	6	615	45	8	12	33	1.73
17473702--17473778	21	3.7	21	68	15	70	20	25	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17485670--17485798	49	2.7	48	87	3	170	50	14	17	17	1.78
17486726--17487041	171	1.8	172	81	3	395	21	16	15	46	1.83
17486806--17487066	86	3.0	85	75	6	229	22	16	13	47	1.81
17486945--17487200	141	1.8	142	82	5	331	19	16	14	49	1.79
17487096--17487352	86	3.0	86	87	2	320	23	19	12	45	1.83
17488366--17488441	12	6.7	11	73	20	52	25	5	1	68	1.18
17488381--17488421	3	13.7	3	84	0	55	29	4	0	65	1.13
17488525--17488867	120	2.9	116	83	8	385	47	7	11	33	1.68
17488525--17488883	59	6.1	59	81	4	388	47	7	11	33	1.68
17488859--17488913	27	2.0	28	96	3	103	47	5	10	36	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160