genome.fa.s334.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  3  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446005--446048	22	2.0	23	86	13	65	34	2	0	63	1.07
446017--446048	15	2.0	17	88	11	50	34	3	0	62	1.11
450716--450764	22	2.3	21	86	10	64	30	0	0	69	0.89
450723--450764	18	2.2	18	87	12	57	30	0	0	69	0.89
459979--460277	152	2.0	152	100	0	598	33	15	18	32	1.93
488081--488122	20	2.2	18	87	8	57	50	0	9	40	1.35
499457--499494	20	1.9	20	88	0	58	50	7	5	36	1.54
500142--500240	48	2.1	48	98	0	189	30	10	31	28	1.90
501451--501486	2	18.0	2	94	0	63	52	0	0	47	1.00
518875--518940	18	3.7	18	72	0	51	9	36	3	51	1.49
518872--518916	21	2.1	21	83	0	54	11	37	0	51	1.38
527367--527643	137	2.0	137	95	0	500	32	18	19	29	1.95
528210--528356	75	1.9	76	94	1	260	30	15	21	31	1.95
542884--542908	2	12.5	2	100	0	50	52	0	0	48	1.00
552949--553024	29	2.7	29	76	13	79	51	1	0	47	1.09
552996--553048	12	4.1	13	80	14	65	50	0	1	47	1.12
553005--553057	26	2.1	24	82	6	61	54	0	1	43	1.11
553101--553143	19	2.2	19	87	8	59	30	4	0	65	1.13
553113--553146	6	5.5	6	86	6	50	32	2	0	64	1.08
553113--553146	13	2.7	13	90	4	52	32	2	0	64	1.08
553205--553241	3	12.3	3	100	0	74	32	0	0	67	0.91
554077--554115	16	2.4	17	86	4	53	15	0	2	82	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554128--554191	25	2.6	25	85	9	78	46	3	1	48	1.27
555587--555681	48	2.0	48	89	0	145	28	26	9	35	1.88
557184--557291	29	3.7	29	76	4	101	42	10	3	43	1.56
557184--557293	58	1.9	58	88	0	166	42	10	3	43	1.55
558944--558974	2	15.5	2	100	0	62	48	0	0	51	1.00
565046--565134	36	2.5	36	76	10	92	40	20	28	11	1.86
566020--566169	76	2.0	74	88	2	219	40	4	7	48	1.52
572051--572104	25	2.2	25	100	0	108	44	16	20	18	1.87
578139--578170	2	16.5	2	93	6	57	50	0	0	50	1.00
583821--583865	22	2.0	23	82	4	56	37	2	11	48	1.51
596431--596476	21	2.3	20	75	13	51	47	2	0	50	1.13
598603--598632	16	1.9	15	93	6	51	73	26	0	0	0.84
603125--603453	162	2.0	163	89	1	500	36	18	8	36	1.81
608019--608278	128	2.0	129	92	2	434	36	5	12	45	1.66
611539--611783	127	1.9	129	83	7	320	40	14	5	39	1.69
611539--611847	127	2.4	128	79	7	304	39	13	5	41	1.68
612546--612842	129	2.3	129	80	2	310	44	9	4	42	1.56
612930--613062	61	2.2	61	84	2	169	41	12	3	43	1.57
616818--616870	25	2.1	25	86	6	72	41	0	0	58	0.98
617416--617523	34	3.3	33	78	12	98	47	0	1	50	1.18
617430--617502	17	4.4	16	72	14	58	47	1	1	49	1.18
620771--620834	32	2.0	31	84	3	83	50	1	1	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620831--620865	17	2.0	18	88	5	54	60	0	0	40	0.97
623491--623520	12	2.5	12	88	0	51	50	0	0	50	1.00
623523--623577	25	2.2	24	78	15	58	41	7	1	49	1.41
633376--633588	90	2.4	90	87	1	302	22	25	14	37	1.92
634386--634429	3	14.7	3	95	0	79	0	36	0	63	0.95
637384--637423	21	1.9	21	85	10	55	27	0	0	72	0.85
637380--637430	16	3.2	16	78	13	61	27	0	0	72	0.85
637760--637837	22	3.5	21	68	26	54	51	0	1	47	1.09
640920--640977	28	2.0	29	83	9	75	65	10	5	18	1.41
645518--645561	18	2.5	18	88	3	63	18	0	2	79	0.83
645516--645561	12	3.9	12	75	16	51	17	0	2	80	0.81
645677--645718	3	13.7	3	80	14	50	33	0	2	64	1.07
645680--645724	19	2.4	18	82	10	54	31	0	2	66	1.04
645778--645824	20	2.3	20	92	3	76	10	10	8	70	1.35
646643--646672	4	7.8	4	92	7	53	23	0	0	76	0.78
646700--646796	11	8.8	11	72	17	69	14	5	2	78	1.01
646686--646796	5	21.6	5	70	18	61	16	5	1	76	1.05
646700--646796	6	15.5	6	71	19	65	14	5	2	78	1.01
646695--646801	20	5.5	20	74	15	82	14	6	1	76	1.07
646686--646801	59	2.0	59	81	13	141	16	6	1	75	1.08
646811--647441	58	10.7	58	78	9	636	45	6	12	35	1.67
646813--647441	117	5.4	116	86	6	840	45	6	12	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647471--647496	10	2.6	10	100	0	52	7	0	0	92	0.39
648321--648365	21	2.1	21	95	0	81	24	35	4	35	1.76
652110--652147	20	1.9	20	94	0	67	36	0	0	63	0.95
652202--652250	17	2.9	17	84	9	64	63	0	0	36	0.95
652804--652862	31	1.9	31	92	0	100	44	1	3	50	1.28
658945--658981	17	2.2	17	95	0	65	43	16	5	35	1.71
661353--661390	19	2.0	19	85	10	51	76	7	0	15	1.01
661771--661798	8	3.5	8	100	0	56	14	0	0	85	0.59
665204--665473	63	4.3	63	79	3	246	33	12	12	41	1.81
665252--665508	62	4.2	62	77	8	238	33	13	13	39	1.84
665810--665889	41	2.0	41	87	0	115	32	13	11	42	1.80
667329--667367	20	2.0	20	89	0	60	30	2	5	61	1.31
667596--667651	29	2.0	27	86	6	76	57	1	0	41	1.09
678706--678737	2	16.0	2	93	0	55	46	0	3	50	1.17
682089--682121	2	16.5	2	93	0	57	48	0	3	48	1.17
686365--686435	35	2.1	34	82	10	83	30	18	8	42	1.80
691149--691177	6	4.8	6	100	0	58	17	48	34	0	1.47
691725--691763	3	13.0	3	86	0	51	35	58	0	5	1.20
691729--691767	12	3.2	12	85	0	51	35	56	0	7	1.28
693195--693219	2	12.5	2	100	0	50	48	0	0	52	1.00
705719--705752	2	17.0	2	87	0	50	55	0	0	44	0.99
713490--713525	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
713570--713670	47	2.1	49	85	7	134	47	8	14	28	1.75
719233--719258	2	13.0	2	100	0	52	50	0	0	50	1.00
719435--719482	24	2.0	25	84	12	64	27	14	0	58	1.37
722024--722065	2	21.5	2	95	4	77	50	0	0	50	1.00
732058--732113	29	1.9	29	85	7	78	30	7	32	30	1.84
740282--740306	1	25.0	1	100	0	50	100	0	0	0	0.00
742579--742610	7	4.6	7	92	0	55	62	0	37	0	0.95
746795--746854	21	2.8	21	73	16	61	40	0	3	56	1.16
747704--747744	20	2.2	20	86	8	59	70	0	14	14	1.16
754422--754449	3	9.3	3	100	0	56	67	0	0	32	0.91
757838--757907	35	2.0	35	81	10	81	40	28	4	27	1.75
761758--761802	2	22.5	2	91	8	74	48	0	2	48	1.13
764703--764744	18	2.3	18	84	8	50	33	2	2	61	1.21
765826--765860	2	18.5	2	88	11	56	51	0	0	48	1.00
768495--768533	11	3.5	12	83	16	57	46	0	0	53	1.00
768499--768534	10	3.5	10	92	7	63	41	0	0	58	0.98
768495--768533	10	3.5	11	89	10	62	46	0	0	53	1.00
770869--770932	26	2.5	26	86	0	83	46	18	14	20	1.83
777438--777524	35	2.5	35	90	0	138	36	10	12	40	1.78
777832--777955	42	2.8	42	80	13	117	23	12	20	42	1.87
777886--778384	147	3.4	147	82	3	601	24	13	20	42	1.87
778511--778888	50	7.6	49	84	6	413	32	11	17	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
778861--778912	26	2.0	26	88	3	77	38	3	11	46	1.59
778811--778962	76	2.0	76	93	2	261	35	8	15	40	1.77
780210--780275	28	2.4	28	81	0	78	33	30	21	15	1.94
781604--782149	184	3.0	184	98	0	1049	27	13	15	43	1.85
782669--782713	21	2.2	20	84	4	54	2	13	6	77	1.05
796065--796107	20	2.1	20	82	4	50	55	13	20	9	1.66
804438--804472	13	2.6	14	86	9	54	57	0	0	42	0.99
804991--805137	30	4.9	29	76	9	91	44	2	1	51	1.24
805083--805141	18	3.4	19	65	31	51	42	1	0	55	1.09
808079--808151	9	8.7	9	71	25	54	54	1	1	42	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160