genome.fa.s334.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  40  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9316274--9316336	18	3.4	18	74	10	56	17	4	36	41	1.71
9316638--9317198	280	2.0	280	91	2	905	41	20	13	24	1.89
9319554--9319632	25	3.1	25	69	15	63	49	0	2	48	1.14
9323240--9323341	3	33.3	3	86	3	132	37	1	29	31	1.69
9325305--9325587	157	1.8	156	89	2	451	31	4	20	43	1.72
9325366--9325863	259	1.9	258	82	3	626	32	5	18	43	1.74
9327957--9327997	18	2.4	17	91	4	64	0	0	14	85	0.60
9327952--9328000	10	5.0	10	80	5	64	0	0	14	85	0.59
9328073--9328395	50	6.6	50	76	12	296	40	13	15	30	1.86
9328244--9328330	43	2.0	43	88	0	129	41	12	18	27	1.87
9328073--9328395	144	2.2	145	81	10	365	40	13	15	30	1.86
9328375--9328421	25	1.9	25	86	4	69	38	10	14	36	1.81
9329057--9329090	10	3.4	10	91	0	50	20	29	0	50	1.49
9329517--9330266	138	5.6	133	74	11	414	46	13	12	28	1.79
9330933--9331055	44	2.8	44	82	0	138	57	11	7	23	1.58
9332142--9332171	10	3.1	10	90	9	53	0	16	0	83	0.65
9332142--9332183	19	2.2	19	86	0	57	2	11	4	80	0.95
9332213--9332242	12	2.5	12	94	0	51	70	13	0	16	1.18
9332402--9332461	22	2.7	22	78	0	66	48	5	8	38	1.55
9332499--9332588	44	2.0	44	86	0	126	46	4	11	37	1.60
9332559--9332665	43	2.5	44	81	4	119	46	3	10	39	1.56
9332515--9332858	65	5.3	66	70	10	197	48	4	11	36	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9332816--9332856	19	2.2	19	95	0	73	43	2	14	39	1.59
9332771--9332921	63	2.4	62	80	7	144	49	4	9	35	1.57
9332515--9332923	22	18.9	22	69	9	169	48	4	10	36	1.58
9332917--9332966	21	2.5	19	75	12	55	42	8	10	40	1.68
9332935--9332997	22	3.0	21	78	17	67	46	6	7	39	1.59
9332981--9333101	22	5.6	21	74	10	93	47	9	4	38	1.57
9332981--9333101	43	2.8	44	77	13	108	47	9	4	38	1.57
9333475--9333615	22	6.3	22	70	11	99	49	6	7	36	1.56
9333940--9334031	22	4.2	21	84	6	103	47	11	3	36	1.57
9333952--9334118	22	7.6	22	78	6	117	42	9	9	38	1.70
9333952--9334125	44	4.0	44	77	6	131	43	9	9	37	1.70
9334080--9334118	21	2.0	20	90	10	62	41	7	15	35	1.76
9334417--9334455	20	2.0	20	90	10	62	51	7	5	35	1.53
9334410--9334490	33	2.5	33	72	8	76	49	11	6	33	1.63
9334507--9334601	21	4.5	21	76	5	84	47	11	6	34	1.65
9334616--9334895	80	3.4	79	75	9	301	45	8	4	41	1.54
9334626--9334968	167	2.0	166	94	2	598	45	9	3	41	1.53
9335027--9335057	2	15.5	2	100	0	62	48	0	0	51	1.00
9336181--9336220	21	2.0	21	85	5	55	55	17	2	25	1.55
9337960--9338000	11	3.6	12	80	9	50	58	0	2	39	1.11
9338413--9338439	13	2.1	13	100	0	54	59	0	0	40	0.98
9338410--9338451	22	1.9	22	85	9	59	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9338448--9338486	17	2.3	17	86	0	51	48	2	0	48	1.15
9340893--9340921	11	2.6	11	100	0	58	24	0	17	58	1.38
9340945--9341096	52	2.9	52	87	1	216	42	8	23	26	1.82
9341650--9341706	25	2.3	26	78	9	64	36	8	33	21	1.84
9342022--9342177	52	3.0	51	83	3	177	42	8	21	26	1.81
9352234--9352273	19	2.1	19	95	0	71	27	27	7	37	1.84
9353354--9353519	91	1.8	91	82	0	215	37	6	12	43	1.68
9354432--9354469	20	1.9	20	89	10	60	31	15	0	52	1.43
9356986--9357031	16	2.8	16	86	3	65	39	0	8	52	1.33
9357931--9357965	2	17.5	2	93	0	61	51	0	0	48	1.00
9364402--9364438	2	18.5	2	100	0	74	48	0	0	51	1.00
9371420--9371457	14	2.8	14	92	4	60	47	21	0	31	1.51
9372143--9372217	27	2.9	27	80	9	75	36	1	1	61	1.13
9372376--9372497	39	3.3	37	83	10	144	55	0	0	43	1.05
9372404--9372488	10	9.1	10	71	21	69	55	0	0	44	0.99
9372369--9372483	46	2.5	44	81	13	126	55	0	1	42	1.10
9372404--9372497	39	2.5	36	90	10	145	55	0	0	44	0.99
9372482--9372513	17	1.9	16	93	6	55	56	0	3	40	1.15
9372443--9372508	28	2.4	28	85	12	91	56	0	1	42	1.08
9372572--9372624	17	3.1	17	76	15	54	54	0	0	45	0.99
9372572--9372624	18	3.0	18	78	13	56	54	0	0	45	0.99
9372636--9372714	36	2.2	36	84	8	108	49	5	1	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9372684--9372913	10	22.8	10	63	17	57	49	1	3	46	1.27
9372671--9372943	21	12.8	21	68	17	118	48	2	2	46	1.31
9372666--9372765	46	2.1	50	83	9	127	51	2	2	45	1.24
9372750--9372923	41	4.2	40	77	5	132	47	1	2	47	1.27
9372750--9372967	62	3.6	60	75	9	183	46	2	2	47	1.31
9372777--9373014	103	2.4	101	78	11	224	47	2	2	46	1.31
9374977--9375013	14	2.9	12	85	14	56	48	8	16	27	1.74
9378744--9378864	64	1.9	64	82	3	154	40	14	14	31	1.85
9381723--9381791	32	2.2	32	84	5	86	34	8	10	46	1.69
9381745--9381810	34	2.0	34	82	5	82	34	9	10	45	1.70
9381731--9381791	32	1.9	33	86	6	90	32	8	9	49	1.66
9384293--9384335	2	22.0	2	95	4	79	48	0	0	51	1.00
9387042--9387068	13	2.1	13	100	0	54	74	7	0	18	1.05
9392371--9392544	55	3.2	55	90	1	269	29	8	13	48	1.71
9392639--9392685	24	2.0	24	83	8	60	42	2	0	55	1.12
9392816--9392852	15	2.5	15	90	0	56	64	10	8	16	1.47
9403413--9403454	21	2.0	22	85	4	59	42	23	19	14	1.87
9409268--9409387	61	2.0	61	91	0	195	21	26	11	40	1.88
9411005--9411062	29	2.0	28	90	3	89	41	5	0	53	1.23
9411356--9411424	23	3.4	20	75	19	63	65	0	2	31	1.08
9415098--9415131	17	2.0	17	88	0	50	50	8	0	41	1.34
9419020--9419044	13	1.9	13	100	0	50	16	8	4	72	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9424994--9425125	50	2.6	49	75	13	124	25	6	18	49	1.71
9425437--9425485	20	2.5	19	77	9	53	22	6	12	59	1.55
9425715--9425749	18	1.9	18	100	0	70	68	25	0	5	1.11
9434972--9435004	17	2.0	17	88	5	50	3	12	18	66	1.36
9437499--9437539	2	20.5	2	94	0	73	53	0	0	46	1.00
9438954--9438994	14	3.0	14	86	10	50	46	7	0	46	1.30
9440902--9441157	130	2.0	131	82	5	313	42	7	10	38	1.69
9441587--9441714	56	2.3	55	81	2	148	25	8	12	53	1.67
9443238--9443272	16	2.2	16	90	5	54	22	0	8	68	1.16
9445500--9445902	123	3.3	123	78	4	366	38	9	12	39	1.75
9447060--9447145	29	2.9	30	84	8	106	46	0	2	51	1.13
9447116--9447157	20	2.1	20	86	0	57	42	0	2	54	1.13
9447647--9447689	23	1.9	22	86	13	61	37	0	4	58	1.19
9448887--9448965	33	2.4	33	87	2	115	41	12	16	29	1.85
9449030--9449104	22	3.4	23	82	14	95	30	9	28	32	1.88
9449044--9449115	22	3.3	22	84	11	94	29	12	27	30	1.93
9449030--9449144	22	5.2	22	76	8	90	31	9	26	33	1.88
9449328--9449488	23	7.5	23	65	18	69	35	15	15	33	1.89
9449311--9449497	43	4.4	40	72	12	142	35	16	14	33	1.89
9449608--9449925	132	2.4	132	80	2	352	33	19	16	30	1.94
9449914--9449963	20	2.3	21	86	10	66	34	14	20	32	1.92
9449914--9449970	23	2.7	21	84	10	71	36	14	19	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9450043--9450137	42	2.3	42	83	3	111	34	17	16	30	1.93
9450061--9450142	42	2.0	42	92	0	137	31	15	17	35	1.91
9450781--9450831	26	2.0	24	85	7	66	37	19	11	31	1.88
9450865--9450960	39	2.5	40	82	3	124	38	14	15	31	1.88
9450962--9451097	40	3.5	40	75	9	118	33	11	16	38	1.84
9452426--9452637	106	2.0	106	93	0	361	40	7	18	33	1.78
9452679--9452716	20	1.9	21	89	10	62	7	0	7	84	0.79
9453820--9453907	28	3.1	27	67	12	68	39	13	21	25	1.90
9455486--9455541	26	2.2	26	80	6	60	33	33	19	12	1.89
9455501--9455575	26	2.9	26	85	0	96	28	29	24	18	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160