genome.fa.s334.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  55  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11671589--11671615	14	1.9	14	100	0	54	66	3	14	14	1.38
11671603--11671690	32	2.8	32	77	10	101	52	1	20	26	1.54
11672117--11672552	148	3.0	145	81	7	504	35	11	14	38	1.83
11672119--11672635	49	10.4	49	75	7	382	36	11	14	37	1.83
11679304--11679581	144	1.9	144	79	1	306	34	14	11	39	1.82
11681106--11681175	19	3.7	18	81	9	77	40	42	4	12	1.63
11681274--11681358	20	4.3	20	72	11	68	45	42	3	8	1.51
11681164--11681526	171	2.1	168	87	4	507	42	38	3	15	1.64
11681502--11681526	13	1.9	13	100	0	50	56	44	0	0	0.99
11681538--11681634	12	7.5	12	70	17	61	43	38	2	16	1.60
11681760--11681816	18	3.1	18	78	14	62	38	36	3	21	1.70
11681785--11681858	22	3.2	23	75	11	62	43	36	2	17	1.64
11681822--11681884	22	3.0	21	75	11	58	47	34	3	14	1.60
11685355--11685409	24	2.3	23	81	6	65	72	1	18	7	1.16
11685343--11685441	28	3.8	26	71	20	73	71	1	20	7	1.15
11692211--11692523	93	3.5	87	76	8	290	41	6	7	43	1.60
11692563--11692599	16	2.3	16	90	0	56	56	0	2	40	1.13
11692649--11692685	15	2.4	16	90	4	58	54	2	0	43	1.14
11696064--11696153	42	2.1	44	85	4	121	17	23	6	52	1.68
11697550--11697695	49	3.0	48	80	6	157	37	16	13	32	1.87
11697562--11697697	50	2.8	49	82	4	157	36	15	12	35	1.85
11697776--11697817	5	8.2	5	84	5	57	4	0	16	78	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11697997--11698228	106	2.2	106	82	1	277	37	16	14	31	1.88
11698174--11698216	22	2.0	22	85	0	59	32	16	18	32	1.93
11698079--11698526	209	2.1	208	83	6	550	35	13	16	34	1.88
11698353--11698409	22	2.6	22	85	0	69	38	15	12	33	1.85
11698497--11698544	22	2.2	22	88	0	69	35	12	20	31	1.90
11698929--11698977	18	2.7	18	87	0	62	38	10	24	26	1.87
11699258--11699342	42	2.0	42	84	2	109	35	9	18	36	1.84
11700787--11700835	22	2.2	22	88	0	71	22	22	12	42	1.86
11700797--11700838	22	1.9	22	100	0	84	19	21	14	45	1.85
11701529--11701586	23	2.7	21	81	5	62	10	1	10	77	1.06
11703663--11703725	28	2.2	28	83	13	76	1	7	9	80	0.95
11706862--11706910	22	2.2	23	85	3	64	6	26	2	65	1.27
11714521--11714563	13	3.1	14	80	19	54	46	16	2	34	1.60
11719369--11719398	12	2.5	12	94	0	51	53	0	0	46	1.00
11724895--11724973	29	2.7	29	79	13	90	40	1	2	55	1.21
11730291--11730343	23	2.3	23	78	18	58	35	0	0	64	0.94
11734466--11734508	22	2.0	22	86	9	61	65	0	6	27	1.18
11737915--11737941	11	2.5	11	100	0	54	0	7	0	92	0.38
11740119--11740175	23	2.5	22	77	5	62	57	5	14	22	1.56
11751338--11751398	14	4.6	13	77	16	63	16	3	1	78	0.96
11751330--11751398	18	3.9	16	75	22	59	15	2	2	78	1.00
11751330--11751379	15	3.3	15	78	13	50	14	4	2	80	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11751607--11751631	12	2.1	12	100	0	50	72	0	16	12	1.13
11752150--11752427	143	1.9	143	79	5	310	33	12	10	42	1.78
11753901--11753962	13	4.6	14	75	11	58	45	38	0	16	1.47
11753894--11753962	20	3.3	21	74	13	79	46	39	0	14	1.45
11755616--11755696	37	2.2	38	86	4	121	32	3	18	45	1.67
11756036--11756092	21	2.7	21	97	0	105	22	24	35	17	1.95
11757639--11757815	72	2.5	72	78	3	169	40	7	7	44	1.61
11757668--11757842	72	2.4	71	80	3	181	42	7	5	44	1.56
11762490--11762552	33	1.9	33	87	9	94	22	7	0	69	1.13
11763697--11763760	26	2.4	26	79	7	67	46	1	3	48	1.27
11764174--11764227	26	2.1	25	86	3	72	59	1	1	37	1.19
11764714--11764740	3	9.0	3	100	0	54	33	0	0	66	0.92
11766096--11766165	30	2.3	32	80	11	85	48	15	10	25	1.76
11766497--11766820	144	2.2	142	78	10	336	31	10	12	44	1.77
11768129--11768245	60	2.0	60	82	0	144	26	14	14	44	1.84
11768312--11768361	19	2.7	18	82	14	57	50	30	4	16	1.63
11768405--11768469	13	5.0	13	68	7	51	46	36	3	13	1.60
11768406--11768526	52	2.4	51	81	9	131	44	33	3	19	1.67
11769651--11769693	20	2.1	21	86	4	61	16	2	4	76	1.05
11769961--11769993	14	2.3	15	89	5	50	36	0	9	54	1.32
11772246--11772375	32	3.9	33	71	10	106	33	3	0	62	1.19
11772254--11772331	38	2.1	36	83	9	95	33	0	1	65	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11772295--11772329	15	2.3	15	90	0	52	25	0	2	71	1.00
11772398--11772461	18	3.2	19	81	16	76	34	4	3	57	1.35
11772424--11772491	33	2.1	32	81	8	75	30	4	2	61	1.30
11772430--11772505	30	2.5	30	78	15	77	26	3	2	67	1.22
11772450--11772508	32	2.0	32	87	12	90	22	3	3	71	1.16
11773388--11773460	6	11.5	6	72	16	58	15	5	1	78	1.00
11773388--11773460	5	13.8	5	73	20	51	15	5	1	78	1.00
11773399--11773465	14	4.4	14	74	22	64	14	7	1	76	1.08
11773389--11773464	27	2.9	26	80	16	86	14	6	1	77	1.03
11773477--11773870	59	6.7	59	80	4	406	44	7	13	34	1.71
11773476--11773815	177	1.9	178	90	2	549	45	6	13	34	1.70
11777719--11777794	34	2.3	33	82	13	86	73	0	18	7	1.06
11777719--11777782	16	3.8	16	76	15	67	75	0	18	6	1.01
11777722--11777792	17	4.1	17	73	23	67	73	0	18	8	1.08
11779045--11779103	22	2.7	22	84	5	66	37	5	20	37	1.75
11779283--11779364	43	1.9	42	85	7	112	36	12	17	34	1.87
11779658--11779993	41	8.1	41	87	2	476	25	16	21	36	1.94
11779658--11779993	83	4.1	82	87	3	469	25	16	21	36	1.94
11779968--11780156	96	2.0	96	96	0	351	17	14	24	42	1.87
11780471--11780594	3	39.7	3	72	15	56	27	4	1	66	1.18
11780625--11780733	32	3.6	32	74	15	90	26	3	5	64	1.32
11780675--11780761	29	2.8	31	80	15	83	18	3	5	72	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11781266--11781308	21	2.0	21	86	8	61	53	0	46	0	1.00
11781625--11781697	6	11.5	6	72	16	58	15	5	1	78	1.00
11781625--11781697	5	13.8	5	73	20	51	15	5	1	78	1.00
11781636--11781702	14	4.4	14	74	22	64	14	7	1	76	1.08
11781626--11781701	27	2.9	26	80	16	86	14	6	1	77	1.03
11781714--11781942	59	3.9	58	85	4	275	47	6	12	33	1.67
11781714--11781996	117	2.3	120	83	8	335	47	6	13	33	1.67
11784986--11785034	21	2.5	19	81	12	55	77	2	18	2	0.96
11785761--11785810	21	2.5	20	75	15	57	74	6	8	12	1.22
11794939--11795026	45	1.9	45	81	2	104	29	7	14	47	1.73
11795171--11795584	43	9.5	44	77	10	327	29	10	16	42	1.82
11795172--11795565	128	3.0	128	80	9	388	29	10	16	42	1.82
11795161--11795521	174	2.1	173	82	7	437	29	10	16	43	1.82
11795172--11795587	87	4.8	86	79	10	357	29	11	16	42	1.83
11795815--11795841	13	2.1	13	100	0	54	14	0	0	85	0.61
11797859--11797914	30	1.9	30	85	7	80	53	5	8	32	1.55
11802421--11802463	17	2.8	15	86	13	61	23	0	0	76	0.78
11802421--11802465	14	3.0	14	79	17	54	26	0	0	73	0.84
11806008--11806039	16	2.0	16	100	0	64	37	18	0	43	1.51
11807801--11807830	14	2.1	14	100	0	60	73	0	6	20	1.05
11807982--11808022	20	2.0	20	95	0	73	21	4	17	56	1.60
11808738--11808775	15	2.4	17	86	8	53	2	15	5	76	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11808818--11808848	14	2.2	14	94	0	53	12	9	6	70	1.31
11809180--11809227	12	3.7	13	76	17	55	20	0	8	70	1.12
11813899--11814234	57	5.8	56	86	7	435	34	13	8	44	1.73
11813899--11814234	115	2.9	115	87	5	475	34	13	8	44	1.73
11814261--11814333	5	14.4	5	77	18	55	78	1	5	15	1.00
11814290--11814334	6	7.5	6	80	9	56	82	2	2	13	0.86
11814264--11814375	10	10.8	10	70	22	72	74	2	4	18	1.11
11814717--11814760	19	2.2	20	84	4	54	36	15	20	27	1.93
11814892--11814944	25	2.1	25	89	6	81	41	16	3	37	1.67
11815436--11815522	34	2.5	34	79	5	95	71	3	1	24	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160