genome.fa.s334.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  106  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20085243--20085345	52	2.0	51	81	12	122	18	0	31	50	1.47
20085298--20085448	16	9.8	16	76	12	138	17	0	31	50	1.51
20085274--20085346	36	2.0	36	81	5	85	17	0	31	50	1.47
20086905--20086967	34	1.9	32	87	6	90	44	0	0	55	0.99
20087058--20087095	20	1.9	20	94	0	67	47	15	13	23	1.81
20087058--20087104	20	2.3	20	85	7	60	51	12	10	25	1.72
20087185--20087245	24	2.6	23	85	12	79	55	11	0	32	1.36
20087198--20087246	25	2.0	24	92	4	80	55	12	0	32	1.37
20087348--20087766	41	10.3	41	84	6	364	51	10	5	31	1.60
20087354--20087766	61	6.7	61	78	9	394	51	10	5	31	1.60
20087424--20087769	80	4.3	80	81	10	325	52	10	5	31	1.60
20087355--20087746	102	3.9	100	75	14	349	52	10	5	31	1.60
20087764--20087824	3	20.7	3	96	3	115	67	0	0	32	0.91
20087839--20087931	20	4.6	20	79	1	78	50	11	7	30	1.66
20088551--20088579	6	4.8	6	100	0	58	13	0	0	86	0.58
20088898--20088988	47	1.9	47	90	2	146	38	17	16	27	1.91
20088942--20089126	43	4.4	42	81	6	194	40	15	14	29	1.87
20089298--20089322	13	1.9	13	100	0	50	40	12	24	24	1.88
20094699--20095197	262	1.9	258	84	4	662	37	14	11	37	1.82
20101713--20102070	160	2.2	162	81	4	413	33	10	14	40	1.81
20101777--20102145	160	2.3	158	80	7	383	32	10	15	40	1.82
20103350--20103387	18	2.1	19	85	14	53	63	0	2	34	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20104482--20104534	21	2.5	20	75	22	54	66	1	0	32	1.03
20112563--20112931	123	3.0	125	96	2	681	42	18	17	21	1.89
20114737--20114797	9	6.6	9	73	14	52	29	0	3	67	1.07
20114710--20114790	18	4.7	17	85	14	89	24	1	4	69	1.16
20115927--20115980	28	1.9	28	88	0	81	81	5	9	3	0.97
20117275--20117303	15	2.0	15	93	6	51	55	6	6	31	1.53
20117914--20117969	22	2.6	21	83	8	60	26	26	17	28	1.98
20117822--20118092	125	2.2	125	81	4	330	35	15	13	35	1.87
20118207--20118449	111	2.2	110	81	7	294	22	16	18	42	1.89
20118406--20118452	22	2.1	22	88	0	67	31	17	14	36	1.90
20128485--20128509	7	3.6	7	100	0	50	0	0	12	88	0.53
20130184--20130217	12	2.8	12	95	0	59	29	38	23	8	1.85
20130420--20130554	66	2.1	65	94	1	234	39	11	19	29	1.87
20133446--20133848	162	2.5	162	83	3	481	43	14	7	34	1.73
20133994--20134104	57	1.9	57	82	7	136	37	10	9	42	1.72
20134097--20134586	161	3.0	158	78	8	488	44	13	7	34	1.72
20146369--20146403	15	2.2	16	90	5	54	60	0	0	40	0.97
20146931--20146974	3	14.7	3	95	0	70	68	4	0	27	1.09
20146934--20147031	12	7.7	12	76	13	79	65	15	2	17	1.37
20146973--20147025	3	17.7	3	84	0	52	64	24	3	7	1.37
20147695--20147830	35	3.9	35	77	0	137	22	16	11	50	1.75
20147713--20147900	70	2.7	70	82	0	214	19	17	12	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20147790--20147907	35	3.4	35	76	4	112	16	18	14	50	1.79
20150107--20150148	21	2.0	21	90	0	66	42	0	9	47	1.36
20150658--20150707	13	3.2	16	75	21	52	72	0	4	24	1.02
20151015--20151151	48	2.9	47	77	9	136	42	29	7	20	1.79
20151116--20151192	30	2.6	29	80	8	84	57	25	2	14	1.50
20151115--20151193	15	5.3	15	73	8	63	58	25	2	13	1.49
20151208--20151250	14	2.9	15	79	6	52	53	23	2	20	1.57
20151203--20151332	37	3.5	36	78	11	131	49	24	2	23	1.62
20151203--20151334	8	17.6	8	67	18	70	48	25	2	23	1.63
20151222--20151272	23	2.3	23	82	3	59	54	21	1	21	1.54
20151275--20151324	23	2.1	24	96	3	93	46	26	0	28	1.53
20151287--20151334	15	3.1	15	77	14	53	41	29	2	27	1.67
20152687--20152748	30	2.1	30	96	0	115	45	8	0	46	1.32
20160164--20160188	13	1.9	13	100	0	50	72	0	12	16	1.13
20163082--20163135	28	1.9	28	100	0	108	51	9	11	27	1.67
20167688--20167726	15	2.5	16	87	4	53	41	0	0	58	0.98
20178827--20178864	20	1.9	20	94	0	67	42	10	7	39	1.69
20180172--20180575	220	1.8	220	80	4	492	32	9	5	52	1.56
20180804--20180891	19	4.7	18	70	14	61	26	5	7	60	1.47
20181052--20181109	24	2.4	24	97	0	107	18	18	20	41	1.91
20181523--20181547	13	1.9	13	100	0	50	20	0	0	80	0.72
20181763--20181830	21	3.2	21	62	17	50	29	10	5	54	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20182337--20182817	214	2.2	217	78	9	500	32	10	5	51	1.60
20183224--20183273	19	2.6	19	78	9	57	56	0	2	42	1.11
20188887--20188916	13	2.3	13	100	0	60	40	0	6	53	1.27
20193902--20193960	31	1.9	31	85	0	82	49	6	8	35	1.60
20194651--20194695	20	2.2	21	84	4	56	51	2	2	44	1.26
20197545--20197583	18	2.0	19	85	14	53	43	12	5	38	1.65
20197880--20197930	15	3.4	15	81	8	68	5	0	9	84	0.78
20197882--20197928	14	3.3	14	82	8	51	6	0	10	82	0.82
20198109--20198297	84	2.2	84	80	7	222	39	16	15	28	1.90
20198303--20198446	53	2.8	50	80	6	153	45	11	10	32	1.74
20198476--20198948	41	11.7	40	67	11	182	35	10	15	38	1.82
20198499--20198597	40	2.4	41	83	6	112	42	10	14	33	1.79
20198516--20198831	81	3.9	81	76	10	231	35	10	14	39	1.80
20198637--20198910	40	6.8	40	70	14	145	34	9	16	39	1.81
20198675--20198916	81	3.0	81	83	6	267	34	9	16	40	1.81
20198768--20198935	81	2.1	82	81	6	191	33	10	16	39	1.83
20200929--20200986	30	1.9	30	82	0	71	5	8	6	79	1.06
20203451--20203644	103	1.9	104	81	3	239	38	8	11	42	1.71
20203803--20203913	20	5.6	20	74	18	90	47	10	4	36	1.59
20203803--20203867	20	3.0	22	84	13	91	49	9	4	36	1.56
20204585--20204638	20	2.7	19	86	13	74	62	24	0	12	1.30
20205242--20205270	6	4.8	6	100	0	58	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20205907--20205990	17	4.9	17	69	21	59	35	8	10	45	1.69
20205907--20205991	34	2.5	33	75	9	91	36	8	10	44	1.69
20206383--20206414	16	2.0	16	93	0	55	43	9	6	40	1.62
20207848--20207881	11	2.8	12	86	13	52	14	2	0	82	0.79
20207848--20207881	12	2.9	11	91	8	50	14	2	0	82	0.79
20209227--20209255	3	10.0	3	92	7	51	68	0	0	31	0.89
20209254--20209296	12	3.6	12	87	0	50	39	6	20	32	1.80
20209333--20209377	3	15.0	3	100	0	90	33	0	33	33	1.58
20209410--20209494	42	2.0	45	86	6	122	50	9	4	35	1.56
20209402--20209496	42	2.4	39	75	13	104	50	10	4	34	1.56
20211770--20211795	2	13.0	2	100	0	52	50	0	0	50	1.00
20213215--20213239	13	1.9	13	100	0	50	28	0	0	72	0.86
20213771--20213815	3	15.0	3	100	0	90	66	0	0	33	0.92
20216689--20216726	18	2.2	16	90	9	58	81	0	15	2	0.80
20227844--20227896	27	2.0	27	84	0	70	28	5	5	60	1.42
20229069--20229095	2	13.5	2	100	0	54	51	0	0	48	1.00
20231522--20231586	32	2.0	32	82	17	80	47	0	3	49	1.17
20232395--20232432	2	19.0	2	94	0	67	52	0	0	47	1.00
20234039--20234093	27	2.0	26	86	13	76	38	12	5	43	1.66
20235137--20235163	2	13.5	2	100	0	54	48	0	0	51	1.00
20235629--20236259	43	14.3	43	72	13	306	42	15	12	29	1.84
20235624--20236259	87	7.2	86	77	6	517	43	15	12	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20235754--20236116	181	2.0	180	84	1	467	43	15	12	28	1.83
20235934--20236259	44	7.5	43	75	9	223	42	15	12	30	1.83
20236192--20236322	67	2.0	67	86	3	183	45	14	9	30	1.76
20236648--20236711	33	1.9	33	87	6	94	40	15	14	29	1.86
20237737--20237777	18	2.3	18	86	0	55	14	17	0	68	1.22
20237752--20237850	29	3.6	28	72	17	73	12	10	0	77	0.99
20237773--20237819	16	2.8	17	84	15	62	10	12	0	76	1.02
20237780--20237850	20	3.1	23	73	21	60	11	8	0	80	0.91
20237811--20237848	17	2.2	17	86	9	51	10	7	0	81	0.87
20237747--20237842	9	10.2	9	72	17	54	12	9	0	78	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160