genome.fa.s334.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  66  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13650107--13650155	8	5.6	8	86	13	62	0	14	0	85	0.59
13650106--13650149	10	4.6	10	80	8	56	0	13	0	86	0.57
13650109--13650156	14	3.4	14	83	11	71	0	16	0	83	0.65
13654393--13654429	12	3.2	12	92	3	58	8	10	8	72	1.27
13654396--13654430	11	3.1	11	91	4	52	8	8	8	74	1.23
13658621--13658659	18	2.2	18	86	4	53	46	10	2	41	1.51
13659992--13660031	11	3.6	11	86	0	53	52	0	17	30	1.45
13661479--13662116	320	2.0	315	87	4	917	38	8	13	38	1.76
13674827--13674940	56	2.0	56	94	0	201	37	5	10	46	1.61
13675957--13676023	29	2.3	27	82	10	71	46	7	0	46	1.31
13676837--13676999	62	2.6	62	83	6	188	39	14	14	32	1.85
13680098--13680162	31	2.1	31	88	0	94	40	15	7	36	1.76
13688527--13688664	55	2.5	55	81	0	168	46	11	13	28	1.78
13699775--13699813	17	2.3	17	86	0	51	25	15	7	51	1.70
13703077--13703115	20	2.0	20	94	0	69	71	5	15	7	1.26
13708916--13708961	23	2.0	23	86	4	65	69	8	10	10	1.37
13719270--13719312	15	2.7	17	79	13	56	53	4	16	25	1.62
13724805--13724857	7	7.9	7	84	14	67	43	47	0	9	1.36
13724805--13724861	13	4.2	14	86	6	82	45	45	0	8	1.34
13725828--13725866	15	2.4	17	91	8	64	82	0	5	12	0.83
13725828--13725866	8	4.9	8	87	6	53	82	0	5	12	0.83
13725895--13725928	8	3.8	9	88	11	52	82	0	5	11	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13725894--13725928	17	2.0	18	94	5	63	80	0	5	14	0.89
13725949--13726002	25	2.2	25	93	0	90	24	9	9	57	1.59
13726019--13726239	112	2.0	112	88	1	327	25	13	19	42	1.87
13728045--13728110	7	9.8	6	78	14	51	59	1	3	36	1.22
13728045--13728132	14	6.4	13	71	15	61	62	1	4	31	1.23
13728037--13728099	7	9.0	7	84	8	76	58	1	0	39	1.07
13728052--13728113	29	2.2	28	86	11	83	58	1	3	37	1.24
13728116--13728213	8	12.1	8	74	9	65	76	4	1	18	1.00
13728148--13728210	27	2.3	26	82	12	74	74	1	0	23	0.90
13729693--13729739	25	1.9	24	87	12	69	63	2	8	25	1.34
13729953--13730017	13	4.8	14	72	14	55	47	21	6	24	1.73
13730009--13730084	28	2.7	28	88	8	118	38	31	15	14	1.88
13730114--13730158	20	2.3	19	88	7	72	44	24	8	22	1.81
13736468--13736521	16	3.6	14	81	16	63	87	3	5	3	0.76
13737021--13737104	14	5.9	14	73	12	57	72	1	21	4	1.10
13737446--13737479	17	1.9	18	88	5	52	85	0	11	2	0.71
13738198--13738434	32	7.2	33	71	10	148	35	19	16	28	1.94
13738701--13738779	12	6.5	11	71	26	54	79	12	5	2	0.99
13738702--13738779	31	2.5	30	78	13	95	79	12	5	2	1.00
13738688--13738778	38	2.4	38	81	15	100	79	13	4	3	1.01
13738689--13738781	33	2.9	32	80	13	102	79	12	4	3	1.00
13738707--13738778	19	3.8	18	80	12	74	79	12	5	2	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13738689--13738781	8	11.9	8	70	13	59	79	12	4	3	1.00
13739034--13739058	3	8.3	3	100	0	50	68	0	0	32	0.90
13739080--13739149	7	10.8	6	90	6	86	62	1	2	32	1.18
13739072--13739144	14	5.5	13	88	9	96	61	1	1	35	1.13
13740821--13740872	14	3.9	14	76	16	56	44	21	7	26	1.79
13740822--13740897	28	2.8	27	80	4	80	40	22	13	23	1.89
13749731--13749765	16	2.2	16	89	0	52	31	14	8	45	1.75
13756395--13756449	25	2.2	25	83	6	67	60	3	14	21	1.50
13757623--13757660	18	2.1	18	95	0	67	39	36	5	18	1.73
13764864--13764908	9	4.7	9	86	13	63	86	0	13	0	0.57
13764864--13764911	20	2.3	21	89	3	71	85	0	14	0	0.60
13766142--13766799	47	14.1	47	80	4	632	30	17	13	38	1.88
13766142--13766787	139	4.6	139	81	6	608	30	17	13	39	1.88
13771628--13771694	22	3.0	22	93	0	107	31	20	5	41	1.77
13772912--13772952	21	1.9	22	85	5	57	12	17	4	65	1.42
13775305--13775405	49	2.1	49	98	0	193	48	9	16	24	1.77
13776823--13777012	97	2.0	97	97	0	362	52	10	14	22	1.71
13777015--13777078	21	3.2	21	64	28	57	12	35	10	40	1.78
13777014--13777092	39	2.0	39	97	0	149	13	39	8	37	1.77
13785582--13785801	116	1.9	114	83	3	280	30	15	21	33	1.94
13787324--13787364	16	2.6	16	92	0	64	56	7	7	29	1.54
13787916--13787971	23	2.5	22	79	5	58	73	0	1	25	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13788285--13788341	19	3.1	19	85	5	73	82	7	7	3	0.94
13789839--13789902	26	2.4	26	82	7	67	59	0	4	35	1.18
13797820--13797865	24	1.9	24	86	0	65	19	8	13	58	1.60
13798362--13798402	18	2.3	18	86	0	55	41	26	4	26	1.76
13798415--13798462	7	6.7	7	83	4	51	47	31	2	18	1.60
13798404--13798447	21	2.2	20	87	4	61	52	31	0	15	1.44
13798653--13798713	25	2.4	27	84	15	76	22	16	13	47	1.81
13798657--13798713	24	2.2	25	85	14	73	22	15	14	47	1.82
13800696--13800720	13	1.9	13	100	0	50	56	0	4	40	1.18
13801024--13801093	12	5.7	12	76	6	59	45	25	11	17	1.81
13801033--13801094	12	5.0	12	80	7	79	48	24	11	16	1.78
13801012--13801094	25	3.4	25	89	1	114	45	25	12	16	1.82
13801033--13801095	13	5.0	13	82	5	85	49	23	11	15	1.77
13801033--13801106	25	2.9	25	91	2	112	48	25	10	14	1.77
13801036--13801106	13	5.6	13	78	5	65	49	26	9	14	1.74
13803615--13803646	13	2.6	13	90	9	50	28	21	25	25	1.99
13804863--13804894	15	2.1	15	94	0	55	34	15	15	34	1.90
13810965--13811034	22	3.1	21	80	12	70	78	7	0	14	0.95
13810993--13811033	15	2.9	13	83	16	55	80	2	0	17	0.82
13810979--13811034	16	3.8	14	75	17	51	78	7	0	14	0.95
13810979--13811034	7	7.6	7	74	18	51	78	7	0	14	0.95
13812338--13812410	32	2.2	32	87	2	101	26	9	17	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13813059--13813103	24	2.0	22	91	8	72	71	0	2	26	0.98
13813243--13813299	12	4.7	12	78	4	60	49	24	8	17	1.75
13813243--13813307	25	2.6	25	75	20	73	50	23	9	16	1.74
13829776--13830155	48	8.0	48	84	5	461	27	16	14	41	1.87
13829776--13830155	95	4.0	94	82	5	464	27	16	14	41	1.87
13830175--13830215	18	2.3	18	95	0	73	43	39	4	12	1.63
13832551--13832665	7	15.4	7	79	8	86	45	33	1	20	1.61
13832551--13832619	29	2.4	28	85	4	84	46	34	1	17	1.57
13832556--13832665	22	4.9	22	76	10	87	43	34	1	20	1.62
13832782--13832842	18	3.5	17	76	14	61	26	16	8	49	1.73
13832789--13832842	17	3.1	17	75	15	56	25	12	7	53	1.65
13840218--13840259	20	2.2	19	83	12	50	47	23	7	21	1.75
13840284--13840347	21	3.1	22	78	13	82	46	18	7	26	1.76
13845282--13845311	15	1.9	16	93	6	53	10	20	20	50	1.76
13875874--13875916	16	2.7	16	77	0	50	13	9	9	67	1.42
13879832--13879878	20	2.3	21	85	3	60	25	12	21	40	1.89
13879840--13879879	20	2.0	20	90	5	62	25	12	20	42	1.86
13880929--13881491	187	3.0	187	92	1	914	47	15	14	22	1.81
13881921--13882219	145	2.1	145	83	3	379	37	14	15	32	1.88
13888701--13888726	10	2.6	10	100	0	52	46	15	7	30	1.74
13889345--13889386	19	2.1	19	86	8	57	78	2	16	2	0.96
13889841--13889890	24	2.1	24	100	0	100	26	12	20	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13893874--13893949	39	1.9	39	86	0	107	32	13	13	40	1.83
13896290--13896326	18	2.1	18	100	0	74	51	10	5	32	1.60
13896308--13896453	79	1.8	79	89	0	229	41	12	10	35	1.78
13900802--13900862	13	4.8	13	76	6	63	18	6	19	55	1.63
13901107--13901135	7	4.3	7	91	8	51	27	0	0	72	0.85
13901256--13901296	4	10.8	4	79	10	50	73	2	0	24	0.96
13901264--13901293	15	1.9	16	93	6	53	73	3	0	23	0.98
13901256--13901292	19	2.0	18	89	5	56	72	2	0	24	0.97
13901252--13901298	23	2.0	23	88	8	69	72	4	0	23	1.02
13902568--13902614	13	3.7	13	80	5	51	12	6	25	55	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160