genome.fa.s334.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  153  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30625517--30625562	20	2.3	20	85	7	58	50	0	0	50	1.00
30629747--30629800	22	2.4	21	82	14	56	40	0	3	55	1.17
30634157--30634193	16	2.2	18	85	9	51	45	5	2	45	1.40
30634289--30634351	31	2.0	31	100	0	126	28	22	14	34	1.93
30634455--30634490	2	18.5	2	94	5	65	50	0	0	50	1.00
30634455--30634487	17	1.9	17	100	0	66	51	0	0	48	1.00
30642260--30642300	3	14.0	3	94	5	75	68	0	0	31	0.90
30651148--30651219	29	2.4	29	75	17	76	43	0	1	55	1.08
30677032--30677099	35	1.9	35	100	0	136	30	22	11	35	1.90
30678536--30678679	75	1.9	75	79	0	162	27	11	32	28	1.92
30679292--30679322	16	2.0	15	93	6	53	35	0	0	64	0.94
30679590--30679635	23	2.0	23	91	0	74	36	10	13	39	1.79
30679803--30679828	12	2.2	12	100	0	52	15	0	7	76	0.99
30680409--30680458	20	2.7	18	87	9	66	42	0	2	56	1.11
30680409--30680456	9	5.1	10	74	20	50	43	0	2	54	1.12
30680815--30680875	30	2.1	29	87	3	86	59	3	0	37	1.14
30682308--30682336	2	14.5	2	100	0	58	48	0	0	51	1.00
30686985--30687010	3	8.7	3	100	0	52	0	34	0	65	0.93
30690580--30690612	2	16.5	2	100	0	66	48	0	0	51	1.00
30691834--30692117	146	2.0	144	92	2	471	28	12	20	38	1.89
30716476--30716502	14	1.9	14	100	0	54	81	3	14	0	0.82
30718406--30718443	18	2.1	18	100	0	76	47	10	15	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30722226--30722715	247	2.0	246	87	3	716	30	18	18	31	1.95
30732315--30732351	19	2.0	18	89	5	56	48	0	0	51	1.00
30739665--30739726	31	2.0	31	96	3	117	61	6	12	19	1.53
30748415--30748446	2	16.0	2	100	0	64	50	0	0	50	1.00
30769807--30769856	25	2.0	25	92	0	82	40	26	20	14	1.90
30777911--30777967	23	2.5	23	72	8	62	73	7	5	14	1.21
30780082--30780130	24	2.0	24	84	7	64	63	2	0	34	1.06
30781863--30781891	14	2.0	15	93	6	51	41	6	0	51	1.28
30782035--30782095	25	2.4	26	75	8	63	39	0	4	55	1.21
30783064--30783099	17	2.1	17	100	0	72	38	11	19	30	1.86
30790839--30790878	3	13.3	3	94	0	71	2	35	30	32	1.71
30801819--30801862	2	22.0	2	85	0	61	45	4	2	47	1.35
30820472--30820502	12	2.7	12	95	5	55	45	0	0	54	0.99
30820481--30820529	12	4.2	11	84	7	53	38	2	0	59	1.09
30826412--30826513	50	2.0	50	98	0	195	24	14	18	42	1.88
30832393--30832431	19	2.0	21	90	10	64	41	2	0	56	1.13
30849461--30849487	14	1.9	14	100	0	54	7	33	0	59	1.25
30858111--30858150	2	20.0	2	100	0	80	50	0	0	50	1.00
30865891--30865925	2	17.0	2	94	5	61	48	2	0	48	1.16
30867958--30868012	22	2.5	22	91	8	87	49	0	0	50	1.00
30874202--30874270	34	2.1	32	86	5	93	46	2	2	47	1.32
30874202--30874273	33	2.2	32	85	7	92	48	2	2	45	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30877534--30877599	21	3.3	21	66	27	54	40	13	9	36	1.76
30879397--30879425	5	5.8	5	100	0	58	79	0	20	0	0.74
30895326--30895353	14	2.0	14	100	0	56	42	7	0	50	1.30
30895516--30895556	12	3.4	12	86	6	57	60	0	0	39	0.96
30895717--30895758	13	3.2	13	90	6	59	23	2	0	73	0.94
30895717--30895758	12	3.2	13	90	6	59	23	2	0	73	0.94
30911605--30911669	15	4.2	16	77	18	66	64	0	3	32	1.09
30911605--30911648	16	2.8	15	86	13	54	72	0	2	25	0.96
30912398--30912436	20	1.9	21	94	5	71	46	0	2	51	1.14
30912434--30912463	8	3.9	8	91	8	53	36	0	0	63	0.95
30912435--30912463	15	1.9	15	100	0	58	37	0	0	62	0.96
30912495--30912558	29	2.2	28	86	2	83	46	0	3	50	1.17
30912501--30912602	36	2.8	36	79	4	98	48	0	2	49	1.16
30912795--30912828	14	2.4	14	90	5	50	61	0	0	38	0.96
30912767--30912841	20	3.5	20	75	12	69	53	1	0	45	1.08
30913055--30913109	19	2.6	21	86	11	69	52	5	0	41	1.24
30914134--30914178	19	2.4	18	82	7	54	53	0	0	46	1.00
30914140--30914195	14	3.9	14	77	11	51	48	0	0	51	1.00
30914137--30914184	19	2.6	19	80	3	53	52	0	0	47	1.00
30914393--30914431	17	2.2	18	86	9	53	82	2	0	15	0.79
30914361--30914431	23	3.1	23	77	20	69	76	1	0	22	0.87
30914356--30914431	12	6.3	12	71	17	52	76	1	0	22	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30915152--30915187	1	36.0	1	100	0	72	100	0	0	0	0.00
30915865--30915960	30	3.2	30	84	1	120	40	6	2	51	1.39
30927095--30927145	26	1.9	27	84	4	68	56	0	1	41	1.10
30927043--30927150	23	4.5	23	75	10	65	52	2	3	40	1.33
30927282--30927311	12	2.5	12	94	0	51	26	0	6	66	1.16
30927402--30927426	11	2.3	11	100	0	50	28	0	8	64	1.22
30942251--30942291	2	21.0	2	95	5	75	51	0	0	48	1.00
30943255--30943288	6	5.7	6	85	0	50	2	14	0	82	0.79
30943580--30943661	37	2.2	36	82	8	92	51	2	1	45	1.22
30944810--30944847	20	2.0	21	85	15	55	34	7	5	52	1.53
30946286--30946310	13	1.9	13	100	0	50	0	0	4	96	0.24
30948784--30948820	2	18.5	2	94	0	65	48	0	51	0	1.00
30956338--30956381	23	1.9	23	95	0	79	56	0	2	40	1.11
30960437--30960473	19	2.0	19	94	5	67	81	0	0	18	0.70
30971085--30971609	263	2.0	263	94	0	924	27	16	15	40	1.88
30973658--30973746	9	9.9	9	75	11	58	44	33	19	2	1.63
30973666--30973791	54	2.3	54	97	0	234	45	33	19	2	1.63
30973673--30973772	18	5.5	18	69	19	57	48	33	17	2	1.58
30974176--30974209	3	11.3	3	87	0	50	38	32	29	0	1.58
30977199--30977255	25	2.3	25	84	6	71	54	1	5	38	1.33
30985319--30985444	43	2.9	44	92	2	218	48	7	1	42	1.40
30986023--30986071	12	4.2	12	77	12	57	38	2	2	57	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30988220--30988440	29	7.7	29	71	10	132	21	1	30	46	1.60
30988360--30988536	29	6.0	30	72	13	136	25	0	26	46	1.57
30988370--30988570	88	2.3	88	86	3	253	23	0	26	48	1.55
30988458--30988708	14	17.2	14	69	12	112	22	0	27	49	1.55
30988416--30988571	44	3.6	42	79	12	163	24	0	25	49	1.55
30988472--30988636	73	2.2	73	91	1	267	23	1	26	49	1.57
30988547--30988628	30	2.8	30	81	10	89	23	2	26	47	1.64
30989414--30989480	28	2.4	28	84	0	89	20	17	16	44	1.86
30989842--30989872	14	2.3	13	94	5	53	9	0	6	83	0.79
30990559--30990634	36	2.1	36	85	0	116	50	10	19	19	1.77
30990565--30990644	36	2.2	36	86	4	108	52	8	18	20	1.71
30990613--30990816	110	1.9	109	84	3	275	45	15	21	17	1.85
30990613--30990845	110	2.1	109	81	3	270	45	15	21	17	1.85
30990679--30991416	216	3.4	216	79	5	553	43	13	22	21	1.86
30990661--30991523	109	7.9	109	76	4	616	43	13	22	20	1.86
30990837--30991525	326	2.1	326	85	2	920	44	12	21	21	1.85
30990882--30991525	216	3.0	215	80	4	668	44	12	21	21	1.85
30991520--30991759	88	2.7	88	78	3	225	41	16	18	23	1.89
30991665--30991873	109	1.9	109	88	1	312	40	15	20	23	1.90
30991911--30992191	128	2.2	128	87	4	397	37	14	14	33	1.87
30993971--30993998	9	3.1	9	100	0	56	10	0	0	89	0.49
31000483--31000522	15	2.7	15	92	0	62	22	0	22	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31000556--31000877	29	11.2	27	72	12	171	19	1	31	47	1.57
31000574--31000642	14	4.9	15	70	10	56	15	0	31	52	1.44
31000570--31000817	58	4.3	58	76	9	206	20	1	31	47	1.58
31000656--31000817	87	1.9	87	82	10	206	20	1	32	46	1.59
31000821--31000875	14	3.9	14	83	4	56	14	1	30	52	1.52
31000748--31000934	88	2.1	88	81	7	211	20	1	28	49	1.59
31000836--31000875	15	2.7	15	92	3	64	12	0	35	52	1.39
31000954--31001087	44	3.0	44	87	7	184	20	0	30	49	1.49
31000974--31001087	15	7.7	15	74	4	106	19	0	31	49	1.49
31006853--31006913	18	3.5	16	76	24	61	70	0	0	29	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160