genome.fa.s334.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  92  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17488800--17488971	85	2.0	87	84	4	224	46	5	15	33	1.68
17488887--17489066	61	3.1	58	86	4	254	46	5	14	33	1.66
17488753--17489029	144	1.9	145	86	7	402	46	6	13	33	1.68
17499800--17499836	18	2.1	18	94	0	65	35	2	24	37	1.70
17500443--17500493	21	2.5	20	75	12	50	27	33	21	17	1.96
17503634--17503666	13	2.6	13	95	4	59	24	6	6	63	1.40
17504831--17505765	161	5.8	160	78	5	827	31	10	15	42	1.79
17504844--17505722	318	2.7	319	79	5	873	31	9	14	43	1.79
17507184--17507291	34	3.2	34	82	11	109	38	13	7	39	1.73
17507195--17507304	34	3.3	34	81	7	102	39	13	7	40	1.73
17507900--17507975	34	2.2	34	86	4	100	39	9	19	31	1.83
17513492--17513768	132	2.1	132	80	6	308	46	5	6	41	1.52
17513771--17514380	267	2.3	263	84	3	731	47	7	7	38	1.58
17513762--17514380	130	4.7	130	79	5	567	47	7	7	38	1.59
17520309--17520382	38	2.0	36	89	5	112	37	10	1	50	1.46
17520588--17520621	13	2.6	13	90	9	52	47	5	0	47	1.26
17520832--17520954	13	9.6	13	70	16	62	20	1	36	41	1.62
17520908--17520965	20	2.9	20	80	10	73	25	0	36	37	1.57
17521000--17521082	41	2.0	40	81	2	94	19	0	33	46	1.50
17521027--17521107	27	3.0	27	74	0	81	12	1	39	46	1.49
17521066--17521107	13	3.2	13	86	6	57	7	2	42	47	1.43
17521575--17521915	11	27.8	12	66	23	119	55	1	0	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17521607--17521864	16	15.6	16	69	19	124	55	1	0	42	1.13
17521579--17521864	32	8.5	34	69	18	158	55	1	1	42	1.15
17521541--17521897	49	7.4	47	73	17	182	54	1	1	42	1.16
17521541--17521820	107	2.8	105	76	15	263	55	1	1	42	1.14
17521594--17521916	23	13.8	23	69	20	131	55	1	0	42	1.14
17521945--17522042	18	5.6	17	73	14	76	45	0	0	54	1.00
17521956--17522042	32	2.5	34	79	17	99	48	0	0	51	1.00
17524444--17524782	49	7.0	49	80	5	357	45	15	10	27	1.80
17524443--17524782	96	3.5	97	82	3	400	45	15	10	27	1.80
17526020--17526095	16	4.6	16	77	9	73	3	9	3	82	0.91
17526020--17526095	31	2.5	29	79	16	82	3	9	3	82	0.91
17536935--17537079	23	6.6	23	67	22	71	24	4	1	69	1.15
17536976--17537079	23	4.5	23	72	21	76	23	5	0	70	1.15
17536994--17537092	44	2.3	43	77	11	103	26	6	1	66	1.21
17537458--17537494	19	1.9	19	89	10	58	27	10	10	51	1.70
17544525--17544613	33	2.7	33	83	11	112	67	0	22	10	1.20
17544573--17544618	18	2.8	16	81	12	65	78	0	15	6	0.95
17545788--17545846	22	2.7	22	84	5	66	38	5	18	37	1.73
17545971--17546193	80	2.7	80	80	6	243	24	13	21	41	1.88
17545960--17546215	41	6.3	41	76	8	182	25	13	21	39	1.90
17546427--17546463	6	6.2	6	100	0	74	16	0	0	83	0.64
17546430--17546513	12	5.9	15	79	9	63	25	2	1	71	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17546436--17546577	22	6.6	22	70	19	77	24	4	1	69	1.17
17546521--17546582	26	2.5	25	79	7	63	22	4	1	70	1.14
17546906--17546942	19	1.9	19	88	0	56	27	8	16	48	1.74
17547322--17547371	9	5.7	9	80	4	57	18	2	4	76	1.04
17548876--17548978	25	4.2	25	74	9	113	49	8	14	27	1.73
17549572--17549616	21	2.2	20	88	11	65	0	15	0	84	0.62
17549569--17549614	9	5.2	9	81	5	58	0	17	0	82	0.67
17550072--17550205	6	21.0	6	76	11	88	16	0	39	43	1.53
17550070--17550203	19	7.0	19	84	6	146	16	0	38	44	1.53
17550144--17550229	26	3.3	25	78	12	84	20	1	36	41	1.60
17550245--17550286	14	3.0	14	82	0	57	19	0	30	50	1.48
17550211--17550286	28	2.8	27	82	9	84	21	0	30	48	1.50
17550298--17550342	20	2.2	20	84	7	56	15	4	33	46	1.66
17553496--17553571	38	2.0	38	100	0	152	44	15	10	28	1.80
17557976--17558031	19	2.8	20	76	10	62	46	17	10	25	1.80
17560365--17560551	7	28.6	7	71	13	80	42	37	0	19	1.56
17560466--17560549	6	13.3	6	78	6	78	38	40	1	20	1.60
17560417--17560550	13	10.4	13	69	13	55	41	36	0	20	1.58
17560366--17560579	19	11.1	19	74	13	91	43	35	0	20	1.55
17560535--17560587	19	2.9	18	88	5	72	50	26	0	22	1.49
17561805--17561911	25	4.3	24	77	8	81	32	9	9	48	1.67
17568673--17568717	22	2.0	22	83	8	56	26	17	6	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17570858--17570905	23	2.0	24	96	4	89	66	8	12	12	1.44
17578839--17578871	17	1.9	17	100	0	66	18	18	24	39	1.92
17579265--17579308	10	4.6	9	86	11	52	84	4	4	6	0.88
17579262--17579306	24	1.9	24	86	4	65	84	4	4	6	0.87
17580790--17580913	31	4.0	31	82	10	148	41	16	18	24	1.90
17580925--17581154	48	4.7	48	76	6	176	27	15	12	43	1.83
17580974--17581179	48	4.2	48	78	8	218	29	16	10	43	1.81
17581283--17581409	47	2.7	48	78	8	125	33	16	11	38	1.84
17581318--17581409	48	1.9	49	88	4	143	35	17	8	38	1.81
17581702--17581758	28	2.0	29	86	10	82	42	15	12	29	1.84
17581733--17581762	10	3.0	10	90	0	51	40	13	10	36	1.78
17581733--17581772	20	2.0	20	90	0	62	37	12	12	37	1.81
17586564--17586596	11	2.8	12	86	4	50	78	9	0	12	0.95
17589493--17589753	62	4.2	62	70	10	183	37	13	15	32	1.87
17589804--17589972	63	2.7	63	79	3	191	34	19	13	33	1.90
17591047--17591097	27	2.0	27	84	7	70	68	0	25	5	1.12
17592418--17592649	13	17.7	13	71	12	91	43	36	0	18	1.57
17592448--17592611	7	24.9	7	74	17	129	43	40	0	14	1.50
17594564--17594754	96	2.0	96	89	0	292	27	10	17	43	1.82
17598382--17598640	131	2.0	130	96	0	473	40	6	6	46	1.55
17600256--17600295	20	2.1	19	85	4	53	25	0	5	70	1.08
17600272--17600344	9	7.7	9	72	20	51	20	4	2	72	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17610471--17610503	16	2.1	16	88	11	50	84	9	6	0	0.76
17621228--17621280	24	2.2	23	90	6	79	73	1	15	9	1.17
17623543--17623630	15	5.4	17	71	16	71	76	3	2	18	1.04
17623543--17623631	43	2.2	39	77	18	85	75	4	2	17	1.08
17623551--17623630	16	5.1	16	73	15	69	76	2	2	18	1.02
17624025--17624062	20	1.9	20	88	0	58	52	31	0	15	1.43
17624436--17624673	3	83.3	3	70	12	144	61	3	3	31	1.31
17625048--17625161	56	2.0	56	81	3	131	46	10	16	26	1.79
17626058--17626248	94	2.0	99	81	8	232	18	20	10	49	1.77
17639255--17639349	30	3.1	30	78	15	106	75	4	1	18	1.02
17640149--17640173	9	2.8	9	100	0	50	92	0	0	8	0.40
17640183--17640380	3	70.0	3	65	17	77	58	4	4	33	1.37
17640183--17640380	12	17.5	11	70	18	85	58	4	4	33	1.37
17640257--17640304	14	3.2	15	88	8	71	60	0	2	37	1.09
17640257--17640304	5	9.6	5	88	6	71	60	0	2	37	1.09
17651972--17652038	24	2.8	24	95	0	116	52	4	4	38	1.42
17652017--17652050	18	2.0	18	88	11	54	44	5	5	44	1.52
17652158--17652206	20	2.5	20	79	0	53	48	6	4	40	1.47
17653033--17653071	20	2.0	20	89	0	60	48	20	12	17	1.80
17654187--17654394	62	3.5	60	74	10	185	48	8	5	37	1.58
17654186--17654394	117	1.8	115	87	4	287	48	8	5	37	1.58
17655246--17655383	72	1.9	72	80	10	163	26	21	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17656475--17657540	473	2.3	468	82	6	1234	33	9	10	46	1.70
17656440--17657540	235	4.8	236	80	6	1096	33	8	11	46	1.71
17665392--17665487	46	2.1	46	92	1	158	44	9	15	30	1.78
17668825--17669248	197	2.1	198	82	5	505	37	12	9	40	1.76
17669239--17669301	29	2.2	29	100	0	126	33	19	6	41	1.76
17669054--17669504	232	2.0	228	80	5	514	35	13	9	42	1.76
17670253--17670417	61	2.7	60	81	11	210	35	9	5	50	1.57
17670438--17670625	64	3.1	59	78	9	198	36	9	6	47	1.63
17670633--17670796	58	2.8	57	79	14	199	31	10	6	51	1.62
17670556--17670701	77	1.9	76	88	4	222	35	7	7	49	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160