genome.fa.s334.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  125  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23346663--23346825	31	5.2	29	76	14	110	44	33	1	20	1.63
23347114--23347166	26	2.0	26	100	0	106	30	15	15	39	1.87
23349964--23350028	32	2.0	33	85	14	91	60	3	0	36	1.13
23349586--23350053	231	2.0	230	94	2	823	36	7	10	45	1.65
23354543--23354588	14	3.1	14	77	17	56	32	2	0	65	1.05
23354583--23354633	21	2.7	18	81	18	68	50	0	0	49	1.00
23354586--23354630	21	2.2	21	92	7	76	48	0	0	51	1.00
23357233--23357275	22	2.0	22	86	9	61	34	6	23	34	1.82
23357266--23357676	104	3.9	104	83	1	455	35	14	11	37	1.83
23357246--23357656	209	2.0	209	84	0	543	35	14	12	38	1.83
23358153--23358217	26	2.4	27	71	2	69	32	9	15	43	1.78
23366934--23366999	15	4.1	15	76	17	62	3	22	0	74	0.96
23375244--23375304	4	15.0	4	74	16	54	31	0	0	68	0.89
23375256--23375306	18	2.9	18	85	5	70	33	0	0	66	0.92
23375228--23375304	38	2.1	37	83	11	95	35	0	1	63	1.03
23375250--23375307	18	3.1	18	72	27	50	32	0	0	67	0.91
23375300--23375344	20	2.2	20	92	0	72	46	0	0	53	1.00
23375328--23375386	26	2.2	28	79	8	70	50	3	1	44	1.28
23375750--23375791	10	3.8	11	81	9	50	50	4	0	45	1.23
23377151--23377180	10	3.1	10	95	4	53	36	0	0	63	0.95
23391397--23391435	19	2.0	20	90	5	62	25	10	10	53	1.66
23391397--23391435	10	4.0	10	83	3	53	25	10	10	53	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23391392--23391457	29	2.3	29	83	0	87	28	9	10	51	1.67
23395353--23395496	55	2.6	55	74	5	137	27	11	12	48	1.75
23395768--23395802	15	2.3	15	95	0	61	65	14	0	20	1.26
23396327--23396453	68	1.9	68	86	0	182	41	13	7	37	1.72
23402167--23402226	26	2.3	27	79	2	68	43	5	0	51	1.23
23409674--23409715	12	3.1	14	76	16	52	40	0	0	59	0.97
23410275--23410337	32	2.0	32	83	0	81	17	4	11	66	1.39
23417986--23418031	23	2.0	23	91	0	74	39	8	21	30	1.84
23418981--23419041	18	3.4	17	78	13	61	19	6	3	70	1.24
23418993--23419055	18	3.4	18	76	10	65	20	7	4	66	1.36
23419062--23419111	20	2.6	19	78	15	57	18	4	2	76	1.04
23420748--23420772	10	2.5	10	100	0	50	32	0	8	60	1.26
23421589--23421627	3	13.0	3	84	10	53	69	0	2	28	1.02
23424654--23424794	66	2.2	65	83	3	167	51	9	14	24	1.72
23424723--23424929	78	2.7	77	77	7	195	49	10	14	25	1.74
23425015--23425224	65	3.3	63	78	9	194	49	13	16	20	1.79
23425055--23425160	31	3.5	30	86	8	142	50	13	14	21	1.76
23424989--23425328	64	5.3	63	74	10	181	49	12	17	21	1.79
23425212--23425345	64	2.1	64	81	5	164	49	9	17	23	1.76
23428333--23428383	11	4.9	11	88	9	72	66	0	0	33	0.92
23428332--23428390	18	3.6	18	70	25	58	69	0	0	30	0.89
23428335--23428396	21	3.2	19	80	13	72	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23428327--23428388	30	2.2	29	80	13	76	72	0	0	27	0.85
23429681--23429719	18	2.1	19	95	4	71	35	10	10	43	1.73
23430822--23430906	32	2.7	32	92	0	134	35	18	14	31	1.91
23430883--23431047	83	2.0	83	95	0	294	30	12	22	34	1.91
23431035--23431140	22	4.8	22	79	8	99	31	22	22	23	1.99
23431049--23431140	44	2.1	43	87	2	130	33	22	20	22	1.97
23431331--23431538	34	6.2	33	75	8	150	37	18	12	31	1.89
23431580--23431740	32	5.0	32	75	3	119	39	18	13	28	1.88
23431620--23431816	91	2.1	92	79	8	211	40	16	12	29	1.86
23431664--23431841	91	2.0	91	80	6	200	39	15	12	32	1.85
23432037--23432177	6	23.0	6	72	16	51	78	9	1	10	1.02
23432056--23432104	24	2.2	23	89	10	75	77	8	0	14	0.98
23432063--23432173	15	7.3	15	73	16	59	79	9	0	9	0.99
23432091--23432175	14	5.9	14	75	18	61	81	10	1	7	0.93
23432068--23432176	23	4.8	23	76	15	68	79	10	0	9	0.97
23432051--23432174	11	10.9	11	71	19	69	79	9	0	10	0.99
23432018--23432175	71	2.3	68	76	13	160	79	9	1	9	1.02
23432018--23432176	10	15.5	10	66	13	58	79	9	1	9	1.02
23432135--23432176	16	2.7	16	79	17	52	85	2	0	11	0.68
23432473--23432527	18	2.8	19	82	17	69	67	0	1	30	1.01
23432471--23432526	9	6.1	9	78	14	53	69	0	1	28	0.98
23432471--23432526	27	2.0	28	86	10	80	69	0	1	28	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23432474--23432527	19	2.7	20	86	11	67	66	0	1	31	1.02
23433641--23433688	12	3.9	12	79	12	53	16	0	6	77	0.97
23433709--23433737	12	2.5	12	94	5	51	82	0	6	10	0.83
23434096--23434162	31	2.2	30	81	10	73	22	14	14	47	1.81
23434162--23434203	19	2.2	19	83	8	50	35	19	19	26	1.95
23434296--23434338	10	4.4	10	80	16	54	58	0	41	0	0.98
23434618--23434674	24	2.5	22	78	13	60	14	5	3	77	1.08
23434602--23434656	28	2.0	28	85	7	76	14	3	1	80	0.94
23434873--23434899	12	2.2	12	100	0	54	85	0	0	14	0.61
23434873--23434918	7	6.6	7	82	12	51	80	2	0	17	0.81
23439286--23439333	19	2.6	19	90	3	62	75	0	14	10	1.06
23439286--23439328	9	4.7	9	83	16	61	76	0	13	9	1.01
23440118--23440161	23	1.9	23	81	9	54	45	6	25	22	1.77
23440481--23440650	80	2.1	79	79	7	191	35	12	18	34	1.88
23440784--23440833	23	2.2	23	85	3	66	36	12	14	38	1.83
23441001--23441476	44	11.1	44	81	4	526	23	11	18	47	1.80
23440994--23441477	86	5.6	86	83	4	575	23	10	18	47	1.80
23441001--23441524	130	4.1	129	81	6	528	23	11	18	46	1.81
23442198--23442277	31	2.6	30	83	11	99	17	5	23	53	1.63
23445470--23445515	22	2.1	22	95	0	83	36	17	23	21	1.94
23446900--23446939	17	2.4	17	86	0	62	45	0	2	52	1.14
23447061--23447099	20	2.0	20	89	0	60	41	2	0	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23447068--23447144	17	4.4	17	69	20	52	44	2	1	51	1.23
23447083--23447152	30	2.2	32	85	9	92	48	1	1	48	1.19
23447127--23447206	26	3.1	25	77	19	83	56	2	1	40	1.21
23447190--23447240	27	1.9	26	84	11	68	64	0	5	29	1.17
23447314--23447402	7	12.1	7	74	18	58	49	1	1	48	1.16
23447274--23447384	51	2.2	49	82	10	136	50	1	0	46	1.18
23447321--23447358	13	2.9	13	81	11	51	50	0	0	50	1.00
23447275--23447364	26	3.6	26	68	11	71	48	2	0	48	1.13
23447368--23447401	8	4.1	8	85	7	50	58	2	0	38	1.13
23450767--23450824	27	2.2	26	84	9	73	36	15	0	48	1.45
23455947--23455995	24	2.1	23	82	17	57	30	0	8	61	1.25
23456654--23456696	17	2.5	17	80	0	50	25	0	4	69	1.07
23456672--23456711	21	2.0	21	90	5	64	25	0	5	70	1.08
23457899--23457950	27	1.9	27	88	0	77	28	23	19	28	1.98
23458146--23458270	49	2.6	49	82	7	141	41	14	8	36	1.75
23458243--23458311	34	2.1	34	94	2	122	43	15	7	33	1.75
23458196--23458354	83	1.9	83	83	12	211	41	13	8	35	1.76
23458270--23458825	145	3.8	142	82	6	645	39	18	10	31	1.84
23458270--23458824	47	11.5	48	85	3	659	39	18	10	31	1.84
23459649--23459690	8	5.2	8	80	11	50	11	14	2	71	1.24
23460859--23460898	20	2.0	21	90	5	64	25	15	5	55	1.60
23470402--23470450	24	2.1	23	82	17	57	30	0	8	61	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23471115--23471154	21	2.0	21	90	5	64	25	0	5	70	1.08
23472226--23472286	14	4.4	14	74	15	63	3	6	11	78	1.05
23472227--23472286	28	2.2	27	85	14	79	3	6	11	78	1.06
23473543--23473572	10	3.1	10	90	9	53	40	0	0	60	0.97
23474081--23474110	15	2.0	15	93	0	51	20	3	0	76	0.92
23479754--23479781	13	2.2	13	100	0	56	46	21	7	25	1.76
23486408--23486440	14	2.3	14	94	5	57	57	0	0	42	0.98
23487262--23487309	23	2.1	23	84	3	62	54	2	6	37	1.38
23489524--23489586	24	2.7	24	82	2	65	53	1	0	44	1.10
23490529--23490573	3	15.0	3	100	0	90	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160