genome.fa.s334.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  61  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12769694--12770292	237	2.5	234	81	6	681	33	9	11	45	1.72
12770508--12770563	17	3.2	17	84	5	58	51	1	1	44	1.22
12778850--12778958	32	3.4	32	89	1	166	33	8	8	50	1.62
12779264--12779344	32	2.5	32	81	0	90	32	8	6	53	1.56
12780075--12780159	42	2.0	42	81	4	100	54	21	8	16	1.68
12780523--12780570	20	2.4	20	96	0	87	33	10	14	41	1.80
12783275--12784204	197	4.7	198	80	5	898	36	10	10	42	1.75
12783291--12784204	395	2.3	395	82	4	1063	36	10	10	42	1.75
12788512--12788674	49	3.4	48	80	7	168	29	10	19	41	1.84
12788662--12788761	43	2.3	43	84	0	119	34	12	14	40	1.82
12789022--12789080	7	8.7	7	80	17	63	18	0	1	79	0.81
12789022--12789091	12	5.9	12	73	20	67	20	0	1	78	0.83
12789022--12789091	30	2.4	28	84	15	97	20	0	1	78	0.83
12789025--12789080	6	9.5	6	81	14	64	17	0	1	80	0.80
12789971--12790047	40	2.0	38	83	14	97	40	1	11	46	1.48
12790138--12790204	31	2.2	31	83	0	89	23	5	11	58	1.56
12792403--12792462	24	2.5	24	77	0	66	11	1	36	50	1.49
12810074--12810100	13	2.1	13	100	0	54	37	0	18	44	1.50
12810541--12810589	24	2.0	24	96	0	89	32	18	28	20	1.96
12822283--12822406	61	2.0	62	98	1	241	16	33	9	40	1.81
12839076--12839122	20	2.2	20	85	7	58	19	2	34	44	1.62
12842605--12842705	8	13.5	8	71	17	67	42	0	1	54	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12842605--12842721	43	2.9	37	71	24	87	42	0	1	54	1.16
12842607--12842705	15	6.7	15	73	20	75	42	1	2	54	1.18
12842607--12842694	23	3.6	23	80	9	95	42	1	2	54	1.20
12842618--12842721	38	2.5	43	85	10	114	42	0	1	54	1.17
12846375--12846433	15	4.1	14	75	14	57	79	1	13	5	0.97
12846384--12846440	14	3.9	14	77	8	60	75	1	17	5	1.07
12849091--12849123	17	1.9	17	93	0	57	54	12	0	33	1.37
12849301--12849340	13	3.2	12	86	13	55	80	2	15	2	0.93
12849301--12849346	24	1.9	24	86	8	67	80	2	15	2	0.91
12849495--12849864	37	10.0	37	74	5	248	35	18	10	36	1.84
12852864--12852971	10	11.0	10	69	4	51	78	1	14	4	0.99
12852918--12852971	12	4.4	12	81	11	65	87	0	9	3	0.67
12852919--12852975	24	2.5	23	88	8	89	84	0	10	5	0.77
12855049--12855092	10	4.3	10	83	16	63	88	4	6	0	0.62
12855410--12855517	43	2.5	43	80	0	135	35	11	13	39	1.81
12855627--12855718	36	2.6	37	82	6	118	25	16	13	45	1.83
12856010--12856120	48	2.3	48	81	1	134	30	8	13	47	1.72
12857497--12857743	54	4.7	53	79	8	222	29	14	11	44	1.79
12857519--12857743	52	4.3	52	79	9	201	28	12	12	46	1.78
12858307--12858573	143	1.9	145	82	4	344	35	11	10	41	1.77
12858963--12859011	19	2.6	19	87	6	64	79	0	16	4	0.88
12858977--12859018	11	3.7	11	87	6	66	85	0	11	2	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12858984--12859031	13	3.8	13	81	10	55	79	0	16	4	0.89
12858977--12859030	24	2.3	23	87	3	72	81	0	16	1	0.78
12860029--12860181	7	22.4	7	68	24	64	48	21	0	30	1.51
12860027--12860181	21	7.6	21	69	16	101	47	21	0	30	1.51
12860103--12860139	18	2.0	19	89	5	58	45	24	0	29	1.53
12860105--12860169	27	2.5	24	80	16	67	49	23	0	27	1.50
12860043--12860175	14	9.3	14	74	15	85	49	19	0	30	1.49
12860295--12860324	14	2.2	13	94	5	51	30	20	6	43	1.77
12860357--12860404	16	3.0	16	82	17	64	54	0	4	41	1.20
12860678--12860745	33	2.1	33	82	0	82	50	10	4	35	1.57
12866137--12866222	41	2.1	41	100	0	172	46	6	4	41	1.51
12866460--12866524	21	3.2	20	75	14	69	30	3	13	52	1.56
12866587--12866618	16	2.0	16	93	0	55	37	3	18	40	1.67
12871708--12871753	24	1.9	24	86	8	67	10	0	39	50	1.38
12871718--12871764	18	2.6	18	86	0	67	12	0	38	48	1.41
12871822--12871863	11	3.9	11	78	15	52	19	0	40	40	1.51
12871826--12871876	20	2.5	20	87	6	77	19	0	37	43	1.51
12871885--12871931	20	2.3	20	92	0	76	21	4	27	46	1.69
12871951--12872161	19	10.5	19	73	14	115	19	1	33	45	1.59
12871963--12872160	20	9.8	20	74	11	109	19	1	32	46	1.59
12872026--12872156	66	2.0	66	86	5	185	20	0	31	47	1.56
12872081--12872122	14	3.2	13	83	9	50	19	0	30	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12872240--12872305	26	2.5	28	76	20	70	16	0	36	46	1.47
12872232--12872330	39	2.5	40	77	9	94	19	0	36	44	1.51
12876512--12876920	145	2.8	143	79	4	392	41	12	12	33	1.81
12878890--12878941	17	2.8	20	80	14	65	25	1	5	67	1.23
12879963--12879990	6	4.7	6	100	0	56	28	0	0	71	0.86
12880139--12880199	24	2.6	24	87	10	83	32	3	9	54	1.50
12880139--12880251	24	4.8	24	74	12	78	32	3	9	53	1.51
12880300--12880360	19	3.3	18	86	4	77	27	4	9	57	1.52
12880390--12880442	19	2.7	20	88	2	72	35	5	9	49	1.59
12882785--12882820	18	1.9	19	94	5	65	19	0	0	80	0.71
12882973--12883030	20	3.1	19	82	5	64	17	8	29	44	1.78
12883095--12883133	19	2.1	19	90	0	60	23	15	25	35	1.94
12883509--12883547	15	2.5	16	91	4	62	61	5	5	28	1.39
12884587--12884614	14	2.0	14	100	0	56	0	0	14	85	0.59
12885515--12885554	18	2.2	19	86	13	57	65	12	2	20	1.38
12893414--12893479	34	1.9	34	90	0	105	34	12	12	40	1.80
12897260--12897284	2	12.5	2	100	0	50	52	0	0	48	1.00
12897284--12897308	2	12.5	2	100	0	50	52	0	48	0	1.00
12898025--12898071	2	24.0	2	95	4	87	51	0	0	48	1.00
12901216--12901260	21	2.2	20	84	7	56	33	2	0	64	1.06
12901355--12901423	20	3.3	20	73	11	75	50	11	0	37	1.39
12901369--12901436	23	3.1	23	70	12	79	44	11	0	44	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12901351--12901436	43	2.0	43	100	0	172	48	11	0	39	1.40
12901364--12901430	20	3.2	20	72	12	71	50	11	0	37	1.39
12906764--12906801	5	7.6	5	82	11	51	76	2	0	21	0.91
12910466--12910497	2	16.0	2	93	0	55	46	0	3	50	1.17
12910608--12910661	28	1.9	29	85	14	78	38	0	1	59	1.08
12910900--12910966	34	2.0	34	85	5	91	37	0	1	61	1.05
12911062--12911089	2	14.0	2	100	0	56	50	0	0	50	1.00
12911344--12911376	15	2.3	15	89	5	50	27	3	0	69	1.03
12912180--12912234	21	2.5	22	82	11	67	23	1	12	61	1.40
12914777--12914852	36	2.1	36	92	0	125	56	13	13	17	1.67
12916122--12916403	62	4.7	60	94	1	435	33	12	7	46	1.70
12916398--12916485	28	3.1	28	100	0	176	30	13	13	42	1.83
12916126--12916740	343	1.8	333	86	7	889	33	13	7	44	1.73
12916455--12916740	120	2.4	120	88	4	429	33	13	7	45	1.72
12916455--12916759	61	5.1	59	80	9	359	32	13	7	46	1.71
12916769--12916847	8	10.2	8	76	17	60	82	0	2	15	0.78
12916762--12916861	18	5.6	17	77	18	89	80	0	5	15	0.88
12916762--12916848	46	1.9	46	90	6	142	81	0	3	14	0.82
12916767--12916848	23	3.6	22	82	11	103	82	0	2	14	0.76
12916762--12916861	33	3.1	33	78	17	95	80	0	5	15	0.88
12917862--12917912	16	3.4	16	82	10	56	54	5	1	37	1.36
12918198--12918245	1	48.0	1	78	0	51	2	0	8	89	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12918198--12918245	22	2.2	22	92	0	78	2	0	8	89	0.56
12918198--12918237	11	3.6	11	89	0	62	2	0	7	90	0.55
12918252--12918628	41	9.2	40	90	4	549	37	23	15	23	1.93
12918252--12918628	83	4.6	81	91	3	576	37	23	15	23	1.93
12919802--12919890	24	3.7	25	81	16	109	7	12	0	79	0.92
12919802--12919857	8	6.9	8	97	2	103	10	12	0	76	1.01
12919880--12919915	18	2.0	18	89	10	56	8	22	0	69	1.15
12925796--12926095	61	5.0	60	83	8	387	32	11	7	48	1.68
12925796--12926085	120	2.4	120	87	4	406	33	12	7	46	1.70
12926113--12926183	10	7.2	10	80	15	69	81	0	2	15	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160