genome.fa.s334.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  68  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14146886--14146910	13	1.9	13	100	0	50	48	0	8	44	1.32
14152022--14152060	15	2.6	15	79	0	51	61	5	2	30	1.31
14152200--14152288	33	2.6	33	83	7	97	51	5	15	26	1.66
14152195--14152279	17	5.0	16	72	12	71	48	7	16	28	1.72
14154386--14154423	19	2.0	19	94	0	67	55	15	5	23	1.61
14155275--14155311	12	3.2	12	84	7	58	62	27	0	10	1.28
14155280--14155317	11	3.4	11	85	7	58	65	28	0	5	1.14
14155298--14155361	34	1.9	33	90	3	101	53	18	7	20	1.69
14159412--14159457	21	2.2	21	88	7	67	58	8	13	19	1.60
14168172--14168245	5	14.0	5	77	14	60	5	2	13	78	1.03
14168172--14168221	17	3.2	16	88	8	68	4	2	14	80	0.95
14168202--14168243	22	2.0	21	95	4	75	7	4	9	78	1.08
14168354--14168524	36	4.8	36	69	8	134	54	15	15	14	1.71
14168642--14168721	35	2.3	35	84	0	106	52	15	17	15	1.75
14168667--14168770	35	2.9	35	82	4	111	52	15	18	13	1.74
14168760--14168865	36	2.9	35	73	5	104	49	11	21	17	1.78
14168786--14168840	18	3.1	18	71	10	58	45	10	23	20	1.82
14168833--14169020	36	5.3	35	70	11	103	54	14	13	17	1.71
14169005--14169197	35	5.5	34	73	12	126	50	17	17	14	1.79
14169947--14170165	80	2.7	79	83	3	251	33	10	14	41	1.80
14171171--14171378	114	1.8	112	79	6	238	21	21	9	47	1.79
14171283--14171540	143	1.8	141	88	6	396	20	20	9	49	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14171788--14171821	12	2.7	13	86	4	52	8	11	0	79	0.94
14176868--14176911	17	2.6	17	92	0	70	50	2	18	29	1.59
14176908--14176953	16	2.9	15	87	6	56	67	6	10	15	1.40
14178102--14178152	25	2.0	25	100	0	102	13	15	11	58	1.63
14180456--14180612	78	2.0	78	100	0	314	24	11	16	47	1.80
14185204--14185270	28	2.3	29	80	14	68	35	2	0	61	1.12
14186012--14186045	13	2.4	14	90	9	52	32	0	0	67	0.91
14189849--14189903	27	2.1	26	82	3	65	36	3	0	60	1.15
14190089--14190123	17	2.1	17	89	5	54	48	5	0	45	1.26
14194114--14194163	12	4.2	12	76	5	57	14	20	0	66	1.26
14194688--14194799	55	2.0	55	100	0	224	48	7	16	28	1.72
14197989--14198510	160	3.3	160	79	7	487	29	7	18	45	1.77
14197904--14198595	158	4.4	156	79	7	629	30	7	18	43	1.77
14201530--14201587	29	2.0	29	93	0	98	56	3	15	24	1.54
14217569--14217652	41	2.0	41	97	0	159	32	19	8	40	1.81
14225922--14225946	3	8.3	3	100	0	50	0	32	0	68	0.90
14232207--14232247	20	2.0	20	85	0	55	26	14	7	51	1.69
14232363--14232402	22	1.9	21	90	10	64	30	12	5	52	1.60
14238064--14238114	25	2.1	24	82	17	61	33	17	0	49	1.47
14250375--14250446	35	2.1	35	91	0	117	44	9	13	31	1.77
14251547--14251571	12	2.1	12	100	0	50	48	8	8	36	1.62
14252676--14254526	464	4.0	462	85	4	2437	40	18	9	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14252676--14254468	919	1.9	912	86	3	2479	39	18	9	32	1.83
14269026--14269051	12	2.2	12	100	0	52	11	0	38	50	1.39
14274564--14274598	17	2.1	17	89	5	54	22	2	11	62	1.41
14276390--14276556	85	2.0	85	91	0	271	29	14	13	43	1.83
14277189--14277217	14	2.0	15	93	6	51	62	6	20	10	1.50
14292629--14292666	17	2.2	18	90	4	60	65	7	0	26	1.19
14298929--14298979	23	2.2	24	82	10	61	43	21	3	31	1.71
14302716--14302750	16	2.1	17	94	5	63	42	25	0	31	1.55
14305425--14305470	12	3.6	13	80	11	51	0	39	0	60	0.97
14305410--14305478	11	5.9	11	78	21	54	0	36	0	63	0.94
14308991--14309033	21	2.1	20	86	4	59	18	2	4	74	1.10
14315742--14315785	23	1.9	23	100	0	88	22	13	18	45	1.84
14315742--14315799	23	2.5	23	86	5	64	25	12	18	43	1.85
14318586--14318764	95	1.9	94	82	7	229	33	17	21	27	1.96
14318732--14318785	21	2.6	21	100	0	108	29	29	22	18	1.97
14321557--14321688	43	3.2	43	63	16	96	54	9	9	26	1.63
14321524--14321682	82	2.0	82	88	2	241	55	9	9	25	1.61
14325548--14325673	19	6.7	19	75	12	91	23	12	23	41	1.88
14325962--14326046	3	28.7	3	74	11	77	31	4	1	62	1.23
14327658--14327697	15	2.7	15	80	0	53	12	0	12	75	1.06
14327734--14327812	36	2.2	36	84	4	106	49	16	16	17	1.80
14327841--14327929	39	2.4	37	84	5	108	57	11	15	15	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14327841--14327919	39	2.0	39	87	0	113	56	12	15	15	1.67
14327988--14328168	33	5.5	32	74	11	125	31	16	16	35	1.91
14328062--14328144	34	2.5	35	83	13	104	31	15	14	38	1.88
14327985--14328168	99	1.9	99	80	6	221	31	16	16	35	1.91
14328146--14328201	29	1.9	29	82	7	69	32	21	17	28	1.96
14328524--14328661	67	2.1	67	81	8	156	31	16	14	36	1.89
14328318--14329044	33	22.5	33	68	12	249	30	15	18	36	1.92
14328565--14328676	35	3.5	31	77	14	93	28	16	15	40	1.88
14330323--14330352	12	2.4	13	94	5	53	13	23	20	43	1.86
14330462--14330486	11	2.3	11	100	0	50	0	16	0	84	0.63
14334299--14334325	12	2.2	12	100	0	54	7	18	0	74	1.05
14336317--14336417	19	5.3	19	76	9	98	18	11	23	45	1.83
14336306--14336417	38	2.9	38	77	2	118	19	10	25	44	1.83
14336573--14336613	14	2.9	14	85	3	55	24	2	2	70	1.11
14336709--14336837	3	43.7	3	84	9	167	28	1	2	67	1.12
14338215--14338263	3	16.3	3	100	0	98	32	0	0	67	0.91
14339200--14339236	14	2.5	15	86	8	58	16	21	5	56	1.59
14345302--14345337	18	2.0	18	88	0	54	50	25	2	22	1.63
14346778--14347679	357	2.5	358	85	2	1204	35	12	15	36	1.85
14351913--14351949	18	2.1	18	94	0	65	43	10	18	27	1.83
14360547--14360593	10	4.4	11	79	12	53	76	0	21	2	0.89
14365415--14365454	21	1.9	22	90	10	66	30	32	2	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14367625--14367674	10	5.2	10	78	4	50	80	4	16	0	0.87
14367631--14367670	18	2.3	17	86	4	53	82	2	15	0	0.77
14368375--14368430	13	4.2	13	75	11	51	78	1	12	7	1.02
14369340--14369614	33	8.6	32	70	12	161	37	16	16	30	1.90
14369226--14369561	160	2.1	160	93	1	575	34	15	16	33	1.90
14369625--14369776	36	4.2	36	74	3	126	15	20	17	46	1.84
14369614--14369759	72	2.0	72	79	0	157	15	18	19	46	1.84
14369823--14369998	36	4.9	35	74	13	144	18	21	13	46	1.83
14372314--14372420	53	2.0	56	87	9	159	52	3	10	33	1.53
14376814--14376862	10	4.9	10	82	0	62	44	20	2	32	1.63
14378252--14378281	15	1.9	16	93	6	53	23	6	33	36	1.81
14378397--14378440	22	2.0	22	86	4	63	54	4	15	25	1.60
14388657--14389142	241	2.0	240	88	0	720	30	17	16	36	1.91
14396909--14396990	40	2.0	40	95	0	146	40	19	7	32	1.79
14401276--14401446	85	2.0	85	91	0	279	28	26	16	28	1.97
14404832--14404895	27	2.4	27	78	5	76	45	0	0	54	0.99
14416754--14416793	14	2.7	16	81	11	50	27	10	10	52	1.66
14427022--14427233	44	4.8	44	80	5	203	39	9	11	39	1.75
14427058--14427277	44	5.0	44	79	4	210	37	8	12	41	1.74
14427054--14427277	91	2.5	90	82	6	251	37	8	13	41	1.75
14427066--14427277	46	4.7	43	77	7	142	37	7	12	41	1.72
14427396--14427437	17	2.5	17	88	0	57	33	16	14	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14428721--14428745	13	1.9	13	100	0	50	16	0	4	80	0.87
14429209--14429264	19	3.0	18	82	7	67	16	7	0	76	0.99
14429209--14429256	18	2.6	19	87	6	64	14	8	0	77	0.99
14429386--14429452	29	2.3	28	80	7	80	35	1	7	55	1.37
14430697--14430751	25	2.2	25	90	0	83	23	10	7	58	1.57
14431509--14431550	18	2.3	19	88	12	61	76	14	7	2	1.10
14432568--14432598	15	2.0	16	93	6	55	12	16	0	70	1.16
14433540--14433585	3	15.3	3	95	0	74	28	0	4	67	1.10
14433774--14433803	3	10.0	3	100	0	60	33	0	0	66	0.92
14436705--14436770	1	66.0	1	72	0	51	3	1	9	86	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160