genome.fa.s334.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  142  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26832011--26832102	21	4.6	20	72	19	77	53	11	6	28	1.62
26832099--26832200	42	2.4	43	83	8	129	53	10	3	31	1.53
26832241--26832299	25	2.2	25	85	8	73	79	1	11	6	0.99
26836115--26836143	10	2.7	11	89	10	51	24	0	0	75	0.80
26836993--26837019	3	9.0	3	100	0	54	33	0	0	66	0.92
26840290--26840315	12	2.2	12	100	0	52	53	0	0	46	1.00
26850376--26850409	17	2.0	17	100	0	68	47	17	17	17	1.84
26855120--26855148	10	2.9	10	100	0	58	27	20	51	0	1.47
26858008--26858049	18	2.4	18	80	4	50	66	2	4	26	1.23
26859865--26859903	19	2.0	20	90	5	62	43	0	0	56	0.99
26860352--26860393	21	2.0	22	85	4	59	42	0	2	54	1.13
26860460--26860500	17	2.4	17	84	8	57	58	0	7	34	1.26
26867042--26867078	2	18.5	2	100	0	74	48	0	0	51	1.00
26871607--26871655	2	24.5	2	91	8	82	51	0	2	46	1.12
26872105--26872132	2	14.0	2	100	0	56	50	50	0	0	1.00
26877326--26877395	30	2.3	30	95	0	122	44	11	14	30	1.80
26879239--26879264	2	13.0	2	100	0	52	50	0	0	50	1.00
26894948--26895003	28	2.0	29	86	10	80	16	23	10	50	1.76
26900847--26900911	34	1.9	34	87	9	98	52	1	4	41	1.31
26912999--26913093	49	1.9	50	84	2	129	29	11	6	52	1.62
26914180--26914239	5	12.0	5	80	19	56	75	3	0	21	0.95
26914484--26914570	42	2.1	42	84	0	111	50	19	8	21	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26914709--26914761	14	3.6	14	76	14	52	39	3	7	49	1.49
26915129--26915388	21	11.6	22	71	11	127	35	12	9	41	1.76
26915126--26915252	22	5.9	22	80	4	143	37	15	7	38	1.77
26915128--26915252	44	2.9	43	88	4	180	38	15	8	38	1.77
26915220--26915373	46	3.3	46	81	5	152	33	11	11	43	1.77
26915358--26915399	21	2.0	21	95	0	75	38	16	4	40	1.70
26915641--26915673	17	2.0	17	88	5	50	33	12	12	42	1.79
26915919--26916082	79	2.1	80	79	3	179	28	26	7	36	1.85
26916693--26916728	16	2.3	15	90	4	54	8	8	0	83	0.82
26916687--26916738	24	2.1	24	86	10	70	7	9	0	82	0.84
26916687--26916738	13	4.2	12	80	20	63	7	9	0	82	0.84
26916693--26916739	10	4.8	10	76	5	51	6	10	0	82	0.82
26917097--26917144	18	2.6	17	84	12	60	4	14	0	81	0.84
26917097--26917144	10	5.4	8	79	18	51	4	14	0	81	0.84
26920894--26920948	26	2.2	24	83	6	65	45	7	1	45	1.41
26920906--26920957	25	2.0	26	85	10	72	44	7	1	46	1.43
26921894--26921953	5	11.6	5	80	19	54	78	1	1	18	0.92
26921900--26921929	7	4.4	7	91	8	53	86	0	0	13	0.57
26921894--26921960	12	5.2	12	74	24	57	77	2	1	17	0.97
26921895--26921945	6	8.3	6	85	6	59	80	1	1	15	0.89
26922604--26922691	43	2.0	43	100	0	176	46	14	2	36	1.58
26924044--26924373	166	2.0	166	95	0	588	46	8	9	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26925091--26925146	22	2.8	19	76	15	51	33	0	7	58	1.25
26925437--26925490	17	3.2	16	82	10	63	51	1	1	44	1.22
26925437--26925483	17	2.8	17	90	0	67	48	2	2	46	1.25
26928854--26928939	3	28.7	3	92	0	91	37	33	25	3	1.73
26957042--26957108	6	11.2	6	76	12	57	35	0	64	0	0.94
26957042--26957108	30	2.2	30	82	10	75	35	0	64	0	0.94
26958512--26958570	24	2.5	24	81	5	68	42	1	1	54	1.20
26960210--26960382	86	2.0	87	89	1	267	26	20	13	38	1.90
26962487--26962606	60	2.0	60	100	0	240	31	11	20	36	1.88
26963637--26963700	33	1.9	33	83	3	83	46	4	12	35	1.62
26974485--26974584	18	6.1	17	69	21	63	52	1	1	46	1.14
26974488--26974580	15	5.8	15	81	7	62	51	1	1	46	1.15
26974698--26974727	16	1.9	15	93	6	51	80	6	3	10	1.01
26976742--26976766	6	4.2	6	100	0	50	84	0	16	0	0.63
26977931--26977982	18	3.3	18	65	34	55	48	0	0	51	1.00
26977920--26977997	29	2.6	30	89	4	113	41	1	0	57	1.07
26979453--26979492	2	20.0	2	100	0	80	50	0	0	50	1.00
26980768--26980809	2	21.5	2	90	4	68	50	2	0	47	1.14
26985956--26986002	23	2.0	24	83	8	60	46	4	4	44	1.42
26987060--26987099	12	3.2	12	86	13	62	50	0	5	45	1.23
26987604--26987634	2	15.5	2	93	0	53	48	0	3	48	1.17
26987701--26987731	14	2.1	15	94	5	55	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26988854--26988895	21	2.0	20	86	13	59	40	2	2	54	1.26
26991391--26991429	3	13.0	3	100	0	78	66	0	0	33	0.92
26991444--26991478	15	2.2	16	90	10	54	0	8	2	88	0.61
26991444--26991503	16	3.8	16	73	10	61	1	11	1	85	0.76
26991444--26991503	29	2.1	29	84	6	77	1	11	1	85	0.76
26992336--26992374	19	2.1	19	90	0	60	28	35	17	17	1.94
26992688--26992740	19	2.6	19	85	8	61	67	0	1	30	1.01
26993555--26993599	20	2.2	20	84	8	54	22	4	22	51	1.66
26999782--26999806	4	6.2	4	100	0	50	76	0	24	0	0.80
27000775--27000928	24	6.5	24	78	11	158	33	4	0	61	1.21
27000764--27000921	8	22.4	7	71	16	66	32	4	0	62	1.19
27000775--27000928	50	3.2	48	81	8	174	33	4	0	61	1.21
27001875--27002009	58	2.3	58	91	2	209	48	5	8	36	1.59
27003453--27003478	3	8.7	3	100	0	52	30	0	0	69	0.89
27004718--27004768	15	3.4	15	83	0	66	21	1	1	74	1.02
27006983--27007042	9	6.4	9	78	3	57	13	16	1	68	1.29
27007863--27007903	11	3.7	11	81	12	57	51	19	0	29	1.47
27008153--27008232	25	3.2	25	84	7	92	22	26	6	45	1.76
27008166--27008271	25	4.2	25	76	9	92	19	28	8	43	1.80
27008171--27008265	50	1.9	50	83	12	124	20	28	7	44	1.78
27008265--27008349	31	2.7	31	85	0	116	28	23	20	28	1.99
27008822--27008971	52	2.9	51	84	2	192	27	19	6	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27010111--27010139	13	2.1	14	93	6	51	41	0	0	58	0.98
27012750--27012785	18	2.0	18	89	10	56	50	0	2	47	1.15
27017667--27017719	21	2.6	20	88	5	79	49	0	0	50	1.00
27018529--27018561	3	11.0	3	100	0	66	66	0	0	33	0.92
27033696--27033764	30	2.4	29	81	9	79	34	0	0	65	0.93
27040083--27040117	12	2.9	12	91	0	52	0	51	2	45	1.16
27040861--27040901	22	1.9	22	90	5	66	53	0	2	43	1.13
27040901--27040933	6	5.5	6	89	10	50	66	0	0	33	0.92
27040901--27040946	13	3.6	13	88	8	60	67	2	0	30	1.03
27040894--27040933	19	2.0	20	90	9	64	65	0	0	35	0.93
27040895--27040946	21	2.5	19	84	12	59	67	1	0	30	1.02
27041113--27041187	23	3.0	25	76	9	73	45	2	0	52	1.15
27041123--27041188	25	2.7	25	77	13	75	48	3	0	48	1.17
27042021--27042046	2	13.0	2	100	0	52	50	0	0	50	1.00
27042675--27042710	19	1.9	19	88	5	56	13	11	8	66	1.44
27056590--27056640	24	2.1	25	88	3	77	27	5	5	60	1.43
27056602--27056648	24	2.0	24	82	0	58	36	6	6	51	1.53
27073218--27073379	81	2.0	82	87	3	238	35	19	12	32	1.90
27084348--27084393	22	2.2	21	78	14	51	26	0	2	71	0.97
27084341--27084401	25	2.5	24	78	10	61	27	0	1	70	0.97
27084348--27084401	24	2.3	24	78	9	58	25	0	1	72	0.95
27085687--27085746	27	2.1	29	82	11	72	46	1	1	50	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27085833--27085895	13	4.6	14	76	16	62	49	1	0	49	1.10
27085837--27085896	29	2.1	27	87	6	84	48	1	0	50	1.11
27085855--27085896	16	2.4	17	80	19	50	50	2	0	47	1.14
27086154--27086187	2	17.0	2	87	0	50	52	2	0	44	1.16
27087988--27088017	2	15.0	2	100	0	60	50	0	0	50	1.00
27093181--27093219	21	1.9	20	89	5	60	7	35	17	38	1.79
27098924--27098965	2	21.0	2	90	0	66	45	0	0	54	0.99
27101869--27101907	18	2.2	17	86	13	53	64	0	20	15	1.30
27103604--27103671	33	2.1	33	100	0	136	19	20	14	45	1.85
27111287--27111355	17	3.7	17	67	25	50	46	0	1	52	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160