genome.fa.s334.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  42  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9580007--9580176	22	7.7	22	68	7	76	27	16	21	35	1.94
9580010--9580092	44	1.9	43	82	2	103	25	16	24	33	1.96
9580017--9580176	66	2.4	66	81	2	178	25	16	21	36	1.94
9580037--9580135	44	2.2	44	80	7	103	25	13	23	38	1.91
9581648--9581695	24	2.0	24	83	0	60	6	12	8	72	1.26
9584234--9584266	17	1.9	17	88	11	50	63	9	9	18	1.49
9587263--9587300	17	2.2	17	86	9	51	13	2	2	81	0.90
9587593--9587651	13	4.6	13	76	19	70	25	1	23	49	1.60
9589391--9589436	19	2.4	19	92	3	74	45	19	4	30	1.70
9590963--9590993	9	3.4	9	100	0	62	41	0	0	58	0.98
9590996--9591029	3	11.3	3	100	0	68	32	0	0	67	0.91
9592451--9592516	3	22.0	3	96	0	114	36	0	30	33	1.58
9592515--9592560	3	15.3	3	100	0	92	67	0	0	32	0.91
9592786--9592893	8	14.0	8	70	7	80	42	23	10	24	1.84
9592902--9592951	26	1.9	26	83	0	64	50	30	4	16	1.63
9599274--9599320	20	2.2	22	82	17	55	70	0	4	25	1.05
9599262--9599319	23	2.7	22	82	15	68	70	0	3	25	1.03
9599583--9599619	8	4.3	9	93	3	51	75	0	0	24	0.80
9599589--9599619	8	3.8	8	95	4	53	74	0	0	25	0.82
9601093--9601126	3	11.3	3	100	0	68	67	0	0	32	0.91
9607864--9607914	23	2.2	23	82	6	59	80	5	9	3	1.01
9607870--9607915	23	2.0	23	87	8	67	80	4	8	6	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9608866--9609140	48	5.7	48	75	13	235	34	14	16	34	1.89
9608865--9609141	96	2.9	97	79	7	296	34	14	16	34	1.89
9608867--9609133	144	1.8	145	84	5	362	34	14	16	34	1.90
9609308--9609356	26	2.0	25	88	8	73	79	6	6	8	1.05
9609608--9609644	19	1.9	19	94	0	65	32	16	13	37	1.87
9610219--9610276	18	3.4	18	66	24	54	32	43	8	15	1.77
9611134--9611186	9	6.2	8	78	8	52	22	0	1	75	0.90
9611134--9611186	17	3.1	16	78	5	52	22	0	1	75	0.90
9611132--9611177	17	2.6	17	82	3	56	23	0	2	73	0.94
9611293--9611350	22	2.7	22	86	7	75	74	0	3	22	0.97
9611283--9611350	17	3.4	20	73	20	70	73	0	2	23	0.97
9611622--9611665	3	14.7	3	100	0	88	68	0	0	31	0.90
9611625--9611749	6	22.6	5	76	16	58	68	1	4	25	1.19
9612711--9612770	3	20.3	3	96	3	113	35	0	0	65	0.93
9612769--9612806	3	12.7	3	100	0	76	34	31	0	34	1.58
9612988--9613029	21	2.0	21	86	4	59	14	7	28	50	1.69
9613083--9613128	20	2.3	20	88	0	65	23	0	28	47	1.52
9613508--9613553	22	2.1	22	100	0	92	26	21	17	34	1.95
9613638--9613684	3	15.7	3	95	0	85	2	0	29	68	1.02
9623348--9623400	14	3.5	15	80	14	56	47	1	0	50	1.12
9623657--9623681	9	2.8	9	100	0	50	24	0	0	76	0.80
9624946--9624979	17	2.1	17	88	5	52	58	2	5	32	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9625133--9625307	86	2.0	87	84	7	234	49	6	4	40	1.49
9625430--9625515	42	2.0	42	93	0	145	50	8	2	39	1.45
9629580--9629639	29	2.1	29	83	0	75	48	5	6	40	1.51
9629946--9629991	10	4.5	10	86	2	56	30	8	15	45	1.76
9629944--9629991	20	2.3	20	89	3	69	29	8	14	47	1.73
9630420--9630463	23	1.9	23	81	9	54	43	4	11	40	1.61
9630588--9630620	3	10.7	3	93	6	57	66	0	0	33	0.92
9630580--9630620	16	2.8	16	89	10	61	68	0	0	31	0.90
9630619--9630664	3	15.3	3	100	0	92	34	0	0	65	0.93
9631801--9631834	17	2.0	17	88	0	50	35	5	5	52	1.50
9641766--9641794	2	15.0	2	92	7	51	0	48	0	51	1.00
9650301--9650329	2	14.5	2	100	0	58	51	0	0	48	1.00
9650599--9650630	2	16.0	2	93	0	55	53	0	0	46	1.00
9666168--9666220	23	2.2	26	80	16	69	35	5	3	54	1.42
9672841--9672886	11	4.2	11	78	10	58	47	8	0	43	1.34
9672840--9672881	22	1.9	22	95	0	75	45	7	0	47	1.30
9680184--9680245	19	3.2	19	77	4	61	56	1	1	40	1.19
9680189--9680249	20	3.0	20	78	2	59	54	0	1	44	1.10
9680215--9680287	34	2.1	35	87	7	105	64	0	4	31	1.12
9680399--9680448	23	2.2	23	89	7	75	68	2	2	28	1.12
9680499--9680537	18	2.2	18	85	0	51	69	10	0	20	1.17
9680651--9680688	20	1.9	20	94	0	67	42	2	7	47	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9680797--9680837	19	2.2	19	86	4	57	29	0	9	60	1.28
9680815--9680902	36	2.4	36	79	3	88	32	3	2	61	1.25
9680844--9680894	26	1.9	27	88	4	77	29	3	0	66	1.09
9680844--9680894	27	1.9	26	84	4	66	29	3	0	66	1.09
9680867--9680935	10	6.7	10	77	12	68	37	1	1	59	1.15
9682169--9682233	28	2.4	28	82	10	89	32	18	4	44	1.70
9683519--9683599	31	2.6	31	90	0	126	44	19	4	30	1.72
9688078--9688112	17	2.1	17	89	5	54	14	11	22	51	1.74
9689752--9689840	30	3.0	29	85	6	99	29	2	2	66	1.16
9689766--9689855	33	2.8	31	80	13	103	27	2	3	66	1.19
9693113--9693152	21	2.0	19	90	9	62	57	0	0	42	0.98
9693107--9693166	21	2.8	21	73	12	59	48	0	0	51	1.00
9693696--9693739	14	3.1	14	83	12	54	59	0	2	38	1.10
9695323--9695524	65	3.1	64	81	9	234	33	9	3	53	1.50
9695323--9695524	66	3.1	67	78	12	237	33	9	3	53	1.50
9697237--9697416	46	3.9	46	84	7	231	36	13	10	39	1.79
9697237--9697409	92	1.9	92	89	4	269	37	13	10	37	1.81
9697378--9697741	46	7.8	46	86	4	453	37	13	9	38	1.78
9697273--9697756	92	5.2	89	80	9	394	37	14	9	38	1.79
9697240--9697649	163	2.5	161	83	6	494	38	13	10	37	1.79
9697382--9697745	137	2.6	137	85	5	451	37	13	9	38	1.78
9697308--9697756	71	6.5	68	76	14	350	37	13	9	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9698794--9698896	10	10.0	10	74	13	59	3	19	0	75	1.01
9698838--9698949	21	5.0	22	83	10	131	2	16	0	79	0.90
9698844--9698934	45	2.0	47	89	8	143	2	17	0	80	0.82
9698832--9698940	11	10.1	10	80	13	103	2	15	0	80	0.87
9698838--9698909	1	72.0	1	71	0	54	0	13	0	86	0.58
9698846--9698949	33	3.2	33	85	6	140	2	18	0	77	0.94
9699295--9699336	15	2.7	15	88	3	66	2	11	0	85	0.68
9702958--9703134	60	2.9	60	94	3	293	36	10	3	49	1.55
9703125--9703164	11	3.6	11	87	9	55	20	0	0	80	0.72
9704025--9704067	20	2.2	20	87	8	61	67	9	4	18	1.36
9704872--9704906	18	1.9	18	88	0	52	37	17	5	40	1.73
9705150--9705217	28	2.3	29	80	12	77	51	1	2	44	1.25
9705454--9705493	18	2.1	18	86	13	53	37	2	10	50	1.50
9706424--9706470	15	3.3	15	82	8	62	21	0	0	78	0.75
9706453--9706522	35	2.0	35	91	5	115	35	4	2	57	1.33
9708308--9708350	20	2.0	22	86	8	63	60	0	2	37	1.10
9708941--9708980	17	2.4	17	91	0	62	7	47	7	37	1.60
9715447--9715566	63	1.9	63	87	3	179	40	10	10	39	1.74
9718155--9718179	5	5.0	5	100	0	50	40	0	0	60	0.97
9718320--9718360	14	2.8	15	82	14	50	56	4	2	36	1.34
9718767--9718833	34	1.9	35	82	8	84	11	13	1	73	1.18
9722762--9722805	17	2.5	18	74	7	54	4	50	2	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9723564--9723588	13	1.9	13	100	0	50	72	0	0	28	0.86
9723798--9723842	12	3.7	12	86	13	65	46	0	0	53	1.00
9723907--9724011	54	1.9	54	96	0	192	31	9	24	34	1.88
9726254--9726289	2	18.0	2	88	0	54	50	0	2	47	1.15
9729128--9729154	3	9.0	3	100	0	54	66	0	0	33	0.92
9729198--9729308	3	40.0	3	75	15	87	34	1	2	61	1.21
9730120--9730161	18	2.3	18	87	0	57	21	2	4	71	1.16
9735823--9736382	120	4.7	120	74	9	387	21	23	11	43	1.84
9736347--9736454	55	2.0	55	86	0	153	24	21	12	41	1.88
9736602--9736709	5	20.8	5	72	18	62	35	2	2	59	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160