genome.fa.s334.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  79  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15558118--15558170	26	2.0	26	88	0	79	28	16	24	30	1.97
15557173--15558859	867	1.9	873	90	1	2654	25	23	25	25	2.00
15558913--15559079	87	1.9	87	86	0	235	25	27	23	23	2.00
15560123--15560175	26	2.0	26	88	0	79	28	15	22	33	1.94
15561011--15561063	26	2.0	26	92	0	88	24	18	26	30	1.98
15559325--15561930	890	2.9	886	88	1	3839	24	22	25	26	2.00
15562004--15565237	862	3.7	861	86	4	4210	25	23	24	26	2.00
15564435--15564487	26	2.0	26	100	0	106	26	20	26	26	1.99
15565419--15565470	26	2.0	26	92	0	86	30	17	25	26	1.97
15568912--15568977	33	2.0	33	96	0	123	31	18	27	22	1.97
15572363--15572415	26	2.0	26	92	0	88	26	16	26	30	1.97
15575001--15575053	26	2.0	26	92	0	88	28	16	26	28	1.97
15577649--15577700	27	1.9	27	100	0	104	26	17	26	28	1.97
15572036--15579395	889	8.3	886	84	4	9073	25	23	24	26	2.00
15581099--15581151	26	2.0	26	85	7	72	30	16	24	28	1.97
15581987--15582037	26	2.0	26	92	0	84	29	13	25	31	1.94
15579393--15584857	889	6.2	885	85	4	7071	25	24	24	25	2.00
15582877--15582927	26	2.0	26	100	0	102	27	19	27	25	1.99
15584616--15584667	26	2.0	25	88	3	77	26	15	28	28	1.96
15584641--15584990	159	2.2	159	83	5	422	20	28	30	20	1.98
15586506--15586557	26	2.0	25	92	3	86	26	13	28	30	1.94
15586690--15586742	26	2.0	26	92	0	88	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15586500--15586901	185	2.2	185	89	0	608	22	26	29	21	1.99
15587581--15587633	26	2.0	26	96	0	97	28	20	26	24	1.99
15588438--15588490	26	2.0	26	92	0	88	28	20	22	28	1.99
15588529--15588670	70	2.0	70	84	0	185	13	33	35	17	1.89
15590257--15590616	185	1.9	185	86	3	510	21	27	29	21	1.98
15591321--15593360	863	2.4	862	88	2	2919	25	24	24	25	2.00
15593337--15593388	26	2.0	26	92	0	86	26	15	26	30	1.96
15593362--15593711	159	2.2	159	86	3	472	22	28	28	21	1.99
15594543--15594595	26	2.0	26	96	0	97	26	18	26	28	1.98
15594384--15594746	185	2.0	185	86	1	512	21	28	29	20	1.98
15595432--15595484	26	2.0	26	92	0	88	30	20	22	26	1.98
15596323--15596375	26	2.0	26	92	0	88	28	16	26	28	1.97
15594569--15601898	889	8.4	861	83	5	8149	25	23	24	25	2.00
15601506--15601558	26	2.0	26	92	0	88	32	18	20	28	1.97
15601552--15602242	344	2.0	344	89	0	1051	21	25	30	21	1.99
15602429--15603115	343	2.0	345	89	2	1051	25	27	24	22	2.00
15603940--15604262	169	1.9	172	85	3	456	23	23	32	19	1.98
15604125--15607481	864	3.9	862	85	5	4099	25	23	24	25	2.00
15606533--15606585	26	2.0	26	92	0	88	26	18	24	30	1.98
15608111--15608163	26	2.0	27	88	3	81	26	16	24	32	1.97
15610523--15610575	26	2.0	26	96	0	97	28	18	26	26	1.98
15611412--15611464	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15609663--15611742	889	2.3	882	86	3	2913	25	24	25	24	2.00
15615628--15615680	26	2.0	26	88	0	79	26	18	26	28	1.98
15617377--15617429	26	2.0	26	96	0	97	26	20	24	28	1.99
15618266--15618316	26	2.0	26	88	0	75	33	15	25	25	1.95
15611740--15625296	863	15.6	883	85	5	16039	25	24	24	25	2.00
15623449--15623501	26	2.0	26	92	0	88	26	24	24	24	2.00
15625212--15625264	26	2.0	26	96	0	97	26	18	26	28	1.98
15627692--15627744	26	2.0	26	96	0	97	26	15	26	32	1.95
15628572--15628624	26	2.0	26	100	0	106	26	20	26	26	1.99
15629459--15629511	26	2.0	26	96	0	97	26	18	26	28	1.98
15625238--15630852	890	6.4	887	87	3	7454	24	23	24	26	2.00
15630349--15630402	26	2.1	26	89	0	81	27	20	24	27	1.99
15631180--15631232	26	2.0	26	92	0	88	26	16	26	30	1.97
15632341--15632391	26	2.0	26	88	0	75	27	17	25	29	1.98
15632419--15632754	171	2.0	171	88	2	496	19	29	33	17	1.95
15633399--15633470	26	2.8	26	100	0	144	27	19	26	26	1.99
15634314--15634366	26	2.0	26	92	0	88	28	18	24	28	1.98
15635200--15635252	26	2.0	26	100	0	106	26	16	26	30	1.97
15632590--15638759	889	6.9	889	86	2	8083	25	23	24	26	2.00
15636092--15636142	26	2.0	26	96	0	93	27	17	25	29	1.98
15637858--15637910	26	2.0	26	92	0	88	26	18	28	26	1.98
15641149--15641209	26	2.4	26	89	5	99	26	22	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15642039--15642091	26	2.0	26	96	0	97	26	18	26	28	1.98
15639406--15642955	890	4.0	889	87	2	5006	25	24	24	26	2.00
15643527--15643579	26	2.0	26	100	0	106	26	20	26	26	1.99
15644418--15644473	26	2.2	26	93	0	94	26	19	23	30	1.98
15646177--15646229	26	2.0	26	92	0	88	30	20	24	24	1.99
15647182--15647497	167	1.9	167	85	1	436	22	25	31	20	1.98
15648093--15648145	26	2.0	26	96	0	97	26	22	24	26	2.00
15648980--15649032	26	2.0	26	85	0	70	28	18	24	28	1.98
15647298--15649791	886	2.8	880	88	3	3536	24	23	24	26	2.00
15650669--15652154	704	2.1	701	88	1	2208	26	23	23	26	2.00
15653792--15653844	26	2.0	26	92	0	88	28	18	24	28	1.98
15655435--15655466	15	2.1	15	100	0	64	18	43	25	12	1.85
15655576--15655628	26	2.0	26	100	0	106	26	20	26	26	1.99
15653006--15655845	904	3.2	894	85	4	3811	25	24	25	25	2.00
15659886--15659948	16	3.9	16	77	8	65	19	4	31	44	1.71
15659891--15659959	33	2.1	33	86	5	95	15	2	31	49	1.60
15661315--15661394	12	6.7	12	71	5	63	16	5	46	32	1.68
15661315--15661400	24	3.5	24	88	1	118	16	5	45	32	1.71
15661448--15661493	13	3.6	13	82	11	51	2	0	15	82	0.76
15661445--15661488	17	2.7	16	89	3	61	2	0	13	84	0.73
15661559--15667714	887	7.0	884	86	3	8104	25	23	24	25	2.00
15665046--15665095	26	1.9	26	100	0	100	28	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15661559--15673125	889	12.9	884	77	9	9774	25	24	24	25	2.00
15666809--15666861	26	2.0	26	100	0	106	26	20	26	26	1.99
15664181--15681058	890	18.6	889	69	14	7617	25	24	24	25	2.00
15667495--15667931	217	2.0	216	86	0	604	25	32	24	17	1.97
15667916--15667968	26	2.0	26	92	0	88	28	18	24	28	1.98
15670529--15670581	26	2.0	26	96	0	97	28	20	24	26	1.99
15672266--15672336	26	2.7	26	100	0	142	28	18	26	26	1.98
15673143--15673195	26	2.0	26	88	0	79	32	24	18	24	1.97
15674168--15674218	26	2.0	26	92	0	84	29	17	23	29	1.97
15675060--15675109	26	1.9	26	100	0	100	28	20	26	26	1.99
15675912--15675964	26	2.0	26	88	0	79	32	24	18	24	1.97
15676042--15676094	26	2.0	26	88	0	79	24	18	24	32	1.97
15676929--15676981	26	2.0	26	96	0	97	28	16	24	30	1.97
15677827--15677905	26	3.0	26	92	0	131	27	18	25	27	1.98
15679632--15679684	26	2.0	26	96	0	97	24	20	26	28	1.99
15680522--15680573	26	2.0	26	96	0	95	28	19	25	26	1.98
15682861--15682913	26	2.0	26	96	0	97	26	18	26	28	1.98
15683688--15683740	26	2.0	26	92	0	88	28	18	24	28	1.98
15683790--15683855	33	2.0	33	81	0	78	12	36	31	19	1.89
15684280--15684332	26	2.0	26	88	0	79	28	18	24	28	1.98
15685171--15685223	26	2.0	26	88	0	79	30	16	24	28	1.97
15683859--15686375	888	2.8	885	88	1	3663	25	23	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15686061--15686113	26	2.0	26	92	0	88	24	18	28	28	1.98
15687690--15687742	26	2.0	26	92	0	88	24	18	28	28	1.98
15686704--15689749	864	3.5	886	84	5	3928	25	24	24	25	2.00
15689443--15689495	26	2.0	26	96	0	97	28	18	26	26	1.98
15691007--15691059	26	2.0	26	96	0	97	28	16	26	28	1.97
15691895--15691947	26	2.0	26	96	0	97	26	18	26	28	1.98
15689744--15692811	890	3.5	888	86	3	4280	25	24	24	25	2.00
15693475--15693527	26	2.0	26	100	0	106	30	20	22	26	1.98
15694359--15694411	26	2.0	26	92	0	88	28	18	24	28	1.98
15695254--15695304	26	2.0	26	92	0	84	27	17	23	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160