genome.fa.s334.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  160  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32872242--32872574	179	1.9	179	84	6	451	37	11	4	45	1.61
32873586--32873614	9	3.3	9	95	4	51	10	0	0	89	0.48
32873653--32873845	42	4.5	42	82	7	237	47	17	11	23	1.80
32873653--32873844	86	2.3	86	84	6	257	47	17	11	23	1.80
32873975--32874035	31	2.0	31	81	12	72	36	13	8	42	1.74
32874181--32874242	21	2.9	21	85	2	61	35	17	8	38	1.80
32874191--32874264	21	3.5	20	83	7	85	37	16	9	36	1.81
32874824--32874867	23	1.9	23	85	0	61	27	20	4	47	1.69
32874457--32874914	231	2.0	231	92	0	774	32	21	11	34	1.90
32874882--32874978	49	2.0	49	91	0	158	32	22	8	36	1.84
32879709--32879956	61	4.2	60	88	5	376	34	8	5	51	1.55
32879700--32879956	118	2.1	120	89	5	403	35	7	5	51	1.55
32879709--32879956	60	4.2	60	87	7	369	34	8	5	51	1.55
32882448--32882539	17	5.4	17	69	7	60	39	13	20	27	1.89
32882508--32882556	16	3.0	16	76	5	53	38	10	20	30	1.86
32882408--32882622	34	6.3	33	71	9	121	38	10	18	33	1.84
32883925--32883969	20	2.2	20	88	7	65	8	6	0	84	0.78
32883927--32883988	27	2.3	27	86	8	81	9	11	0	79	0.95
32883938--32883971	17	1.9	17	88	5	50	11	8	0	79	0.94
32889196--32889342	54	2.6	56	84	5	199	38	8	6	46	1.62
32889196--32889350	58	2.8	55	80	6	186	37	8	6	47	1.59
32892885--32892914	15	2.0	15	100	0	60	40	6	13	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32897074--32897127	16	3.4	15	80	10	63	22	0	0	77	0.76
32897074--32897120	22	2.0	24	88	8	71	23	0	0	76	0.78
32897074--32897120	6	8.2	6	85	4	53	23	0	0	76	0.78
32897123--32897429	60	5.1	58	76	12	230	48	5	10	35	1.61
32897148--32897429	61	4.7	60	79	12	235	49	4	10	34	1.60
32907912--32907966	1	55.0	1	77	0	56	89	0	0	10	0.50
32907905--32907965	8	7.8	8	80	10	72	86	0	0	13	0.56
32907905--32907966	9	6.7	9	84	14	81	87	0	0	12	0.55
32907904--32907966	15	4.0	15	86	14	83	85	0	0	14	0.59
32908667--32908706	16	2.4	16	87	4	53	25	20	17	37	1.94
32908970--32909262	43	6.9	43	78	9	244	23	13	20	42	1.88
32909072--32909262	44	4.3	44	82	5	224	24	13	20	41	1.89
32909453--32909541	10	8.4	11	75	19	66	20	1	4	74	1.06
32909447--32909496	21	2.4	21	83	6	66	20	0	2	78	0.86
32909450--32909541	32	2.9	30	75	15	80	20	1	4	73	1.06
32910369--32910670	60	5.2	57	79	14	291	45	4	12	37	1.62
32910504--32910605	52	2.0	52	96	0	186	44	2	16	36	1.63
32910452--32910665	112	1.9	112	88	7	328	45	3	14	37	1.61
32910612--32910769	71	2.2	72	79	6	178	50	5	8	35	1.56
32910724--32910871	60	2.5	58	80	7	172	49	6	9	34	1.62
32910988--32911027	9	4.6	9	87	3	55	15	7	0	77	0.98
32912327--32912365	20	2.0	20	85	10	53	51	2	5	41	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32918151--32918191	20	2.0	22	85	9	59	26	24	17	31	1.97
32923129--32923171	14	3.0	14	80	6	50	46	0	0	53	1.00
32923134--32923171	14	2.6	15	87	4	60	44	0	0	55	0.99
32925819--32925954	68	2.0	68	100	0	272	35	23	7	33	1.83
32928335--32928375	18	2.3	18	80	16	50	14	17	0	68	1.22
32937761--32937797	16	2.3	17	81	13	51	37	10	10	40	1.75
32938768--32938819	21	2.4	21	96	3	95	15	28	19	36	1.92
32944639--32944689	17	3.0	17	80	16	61	80	0	3	15	0.86
32945698--32945767	33	2.1	33	86	5	97	30	15	18	35	1.92
32946050--32946207	43	3.7	43	92	5	248	21	11	18	48	1.80
32946120--32946317	110	1.8	110	82	2	254	24	11	17	46	1.80
32946285--32946435	43	3.6	43	80	7	175	24	15	17	43	1.87
32946230--32946586	86	4.1	83	77	6	284	26	14	15	43	1.84
32950108--32950175	32	2.1	32	97	0	127	39	4	20	35	1.73
32952831--32952925	47	2.0	47	95	0	172	15	40	15	28	1.89
32953102--32953137	2	18.0	2	100	0	72	50	0	0	50	1.00
32960448--32960513	33	2.0	33	100	0	132	27	3	12	57	1.49
32961415--32961465	26	1.9	26	88	4	75	41	0	7	50	1.31
32962438--32962470	2	16.5	2	100	0	66	51	0	0	48	1.00
32962986--32963031	16	2.6	18	80	16	60	10	0	6	82	0.83
32962987--32963032	18	2.6	18	82	3	58	10	0	6	82	0.83
32968076--32968114	21	1.9	20	89	5	60	82	0	7	10	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32972640--32972680	21	2.0	21	85	0	55	80	0	9	9	0.91
32974452--32974546	50	1.9	50	93	0	163	15	15	11	56	1.66
32981440--32981609	73	2.3	73	83	5	202	51	11	17	20	1.76
32981448--32981567	37	3.3	37	73	9	111	52	10	15	20	1.73
32981697--32982174	155	3.1	153	80	7	484	30	16	22	31	1.95
32982310--32982371	31	2.0	31	87	0	88	29	9	22	38	1.86
32982630--32982702	31	2.3	32	88	2	103	31	12	17	38	1.87
32982773--32982953	53	3.4	53	72	7	186	29	16	19	34	1.94
32982746--32982962	107	2.0	107	90	0	344	29	15	18	35	1.92
32982901--32982983	32	2.6	31	77	5	87	27	19	20	32	1.97
32983945--32984004	21	2.8	21	73	14	50	31	1	11	55	1.46
32984149--32984190	19	2.3	19	87	4	59	78	2	4	14	1.01
32985070--32985133	12	5.5	12	77	15	55	59	1	4	34	1.28
32985064--32985133	34	2.1	33	82	12	81	61	1	4	32	1.24
32985111--32985155	17	2.4	19	85	10	58	48	8	2	40	1.47
32985414--32985725	119	2.6	117	79	5	313	44	11	22	21	1.84
32985640--32985803	87	1.9	86	84	1	220	43	12	23	20	1.86
32987937--32988070	49	2.6	49	84	8	153	29	8	5	56	1.52
32988570--32988669	50	2.0	51	86	5	141	30	7	10	53	1.61
32989043--32989071	15	1.9	15	100	0	58	27	3	0	68	1.05
32989395--32989428	13	2.7	12	90	9	50	0	26	0	73	0.83
32989743--32989780	18	2.1	19	90	5	60	2	5	18	73	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32990287--32990594	41	7.5	41	82	7	329	43	20	12	23	1.85
32990287--32990594	122	2.5	124	83	4	374	43	20	12	23	1.85
32990287--32990594	83	3.8	81	80	8	347	43	20	12	23	1.85
32990871--32990909	20	2.0	20	84	0	51	35	15	10	38	1.81
32990954--32991000	25	1.9	24	95	0	76	36	10	10	42	1.74
32991027--32991072	22	2.1	22	95	0	83	43	15	8	32	1.77
32991367--32991466	48	2.1	49	86	1	139	29	20	11	40	1.86
32992164--32992237	10	7.8	10	75	15	52	5	14	0	79	0.90
32992167--32992239	19	4.3	16	75	16	51	5	13	0	80	0.87
32992167--32992244	11	7.2	10	73	19	59	5	12	0	82	0.83
32992185--32992235	23	2.3	22	82	3	57	5	11	0	82	0.83
32992201--32992244	23	1.9	24	90	9	74	2	9	0	88	0.59
32992196--32992261	22	2.8	24	80	13	75	6	13	0	80	0.89
32992623--32992663	21	2.0	21	85	0	55	0	14	4	80	0.87
32996358--32996465	56	1.9	56	86	1	155	26	10	6	56	1.57
32996871--32996906	15	2.4	15	85	0	54	75	2	0	22	0.94
32997375--32997417	19	2.3	19	83	0	50	60	13	4	20	1.51
33007406--33007512	20	5.6	19	70	21	82	28	0	12	57	1.41
33007466--33007530	20	3.2	20	86	6	87	33	0	9	56	1.31
33007579--33007613	15	2.5	13	86	13	52	77	8	0	14	0.99
33007580--33007617	14	2.6	15	95	4	69	78	5	0	15	0.91
33008075--33008118	20	2.3	19	80	4	52	63	18	6	11	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33008565--33008604	3	14.3	3	84	10	50	70	0	0	30	0.88
33008590--33008641	18	2.9	19	80	13	65	55	5	0	38	1.24
33008584--33008632	15	3.5	14	81	13	57	55	4	0	40	1.19
33008785--33008850	29	2.3	29	78	0	69	24	3	34	37	1.71
33008834--33012953	7	590.4	7	98	0	7753	13	0	43	42	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160

The End!