genome.fa.s334.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  75  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15018458--15018510	26	2.0	26	85	7	72	30	22	16	30	1.96
15019114--15019166	26	2.0	26	85	7	72	30	22	16	30	1.96
15019859--15019931	26	2.8	26	97	0	137	24	23	21	30	1.99
15020770--15020848	26	3.0	26	94	0	140	26	26	20	26	1.99
15021110--15024339	891	3.6	885	85	4	4254	26	24	23	25	2.00
15025144--15025194	26	2.0	26	92	0	84	27	25	19	27	1.99
15026032--15026084	26	2.0	26	96	0	97	28	26	18	26	1.98
15026663--15026703	20	2.0	20	95	0	73	24	48	4	21	1.69
15026939--15026991	26	2.0	26	96	0	97	28	26	18	26	1.98
15027832--15027882	26	2.0	26	92	0	84	31	25	15	27	1.96
15024359--15035802	891	12.9	889	85	4	14279	25	24	24	25	2.00
15029584--15029636	26	2.0	26	96	0	97	26	26	18	28	1.98
15030471--15030523	26	2.0	26	96	0	97	26	24	20	28	1.99
15031367--15031419	26	2.0	26	100	0	106	26	26	20	26	1.99
15032237--15032292	26	2.2	26	96	0	103	28	23	19	28	1.98
15033129--15033181	26	2.0	26	92	0	88	24	24	20	30	1.99
15035776--15036054	152	1.8	152	88	3	427	20	26	29	23	1.98
15037711--15037763	26	2.0	26	88	0	79	30	26	18	24	1.98
15038336--15047730	887	10.8	862	82	6	10588	25	24	24	25	2.00
15044562--15044614	26	2.0	26	96	0	97	28	26	18	26	1.98
15045448--15045500	26	2.0	26	92	0	88	28	26	16	28	1.97
15043700--15047730	889	4.5	886	88	1	5758	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15047229--15047280	25	2.0	26	92	3	88	26	23	21	28	1.99
15048885--15048937	26	2.0	26	92	0	88	28	26	16	28	1.97
15049581--15049943	159	2.3	159	82	2	426	18	29	29	23	1.97
15050280--15050338	26	2.2	27	82	8	68	62	8	5	23	1.43
15052188--15052240	26	2.0	26	92	0	88	30	26	15	28	1.96
15053078--15053156	26	3.0	26	86	0	104	30	24	15	30	1.95
15054856--15054908	26	2.0	26	92	0	88	26	26	20	26	1.99
15053989--15056153	890	2.5	883	88	4	3077	25	23	25	26	2.00
15056146--15056176	16	1.9	16	100	0	62	35	19	25	19	1.95
15056416--15056468	26	2.0	26	85	7	72	30	26	16	26	1.97
15057304--15057358	26	2.1	26	93	0	92	27	23	20	29	1.99
15056174--15061878	892	6.5	887	84	4	7177	25	24	24	25	2.00
15058199--15058251	26	2.0	26	92	0	88	28	24	18	28	1.98
15059051--15059103	26	2.0	26	92	0	88	28	24	18	28	1.98
15059937--15059989	26	2.0	26	89	7	81	30	24	15	30	1.95
15058363--15061878	888	4.0	885	85	4	4629	25	24	24	25	2.00
15061683--15061735	26	2.0	26	88	0	79	26	24	20	28	1.99
15062986--15063038	26	2.0	26	89	7	81	26	18	20	33	1.96
15062635--15069197	889	7.4	889	90	2	9394	25	24	24	25	2.00
15065651--15065703	26	2.0	26	85	0	70	24	24	22	28	2.00
15066540--15066592	26	2.0	26	88	0	79	26	24	20	28	1.99
15067394--15067446	26	2.0	26	85	0	70	28	22	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15069616--15069675	23	2.6	23	91	2	102	26	31	16	25	1.96
15069826--15070095	148	1.8	148	83	3	364	17	35	25	21	1.94
15071075--15071127	26	2.0	26	92	0	88	28	22	22	26	1.99
15071958--15072032	26	2.9	26	95	0	132	26	14	28	30	1.95
15073752--15073804	26	2.0	26	100	0	106	26	20	26	26	1.99
15070990--15080407	889	10.4	887	72	12	6339	25	24	24	25	2.00
15074644--15074696	26	2.0	26	96	0	97	26	18	26	28	1.98
15070990--15075414	880	5.0	878	86	5	5888	25	24	24	25	2.00
15075231--15075602	185	2.0	188	91	1	615	27	28	22	22	1.99
15078367--15078419	26	2.0	26	89	7	81	26	18	24	30	1.98
15079255--15079307	26	2.0	26	88	0	79	28	24	20	26	1.99
15080137--15080189	26	2.0	26	96	0	97	26	18	26	28	1.98
15080234--15080539	167	1.8	167	85	1	434	19	31	31	17	1.95
15084071--15084123	26	2.0	26	88	0	79	28	16	24	30	1.97
15084959--15085011	26	2.0	26	88	0	79	28	16	24	30	1.97
15083207--15089864	888	7.6	887	86	4	8661	25	24	24	25	2.00
15086684--15086734	26	2.0	26	92	0	84	27	15	25	31	1.96
15088451--15088503	26	2.0	26	88	0	79	26	20	22	30	1.98
15085834--15089864	887	4.6	887	86	2	5390	25	24	24	25	2.00
15089338--15089390	26	2.0	26	88	0	79	28	20	22	28	1.99
15090013--15090091	26	3.0	26	92	0	122	29	16	26	27	1.97
15090923--15090975	26	2.0	26	85	7	72	30	15	24	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15092382--15093018	324	2.0	325	85	1	875	24	28	24	23	2.00
15093000--15093052	26	2.0	26	92	0	88	30	20	22	26	1.98
15093888--15093940	26	2.0	26	100	0	106	26	20	26	26	1.99
15092706--15096644	888	4.5	889	83	5	4871	25	24	24	25	2.00
15095622--15095674	26	2.0	26	89	7	81	26	16	24	32	1.97
15095700--15095727	11	2.5	11	100	0	56	14	21	42	21	1.88
15097641--15097693	26	2.0	26	100	0	106	26	20	26	26	1.99
15098531--15098584	26	2.1	26	92	0	90	31	22	22	24	1.98
15096778--15100309	888	4.0	885	86	3	4754	25	24	24	26	2.00
15101948--15102057	26	4.2	26	95	1	184	26	19	26	28	1.99
15104477--15104529	26	2.0	26	85	0	70	30	18	22	28	1.98
15105327--15105380	26	2.1	26	96	0	99	27	20	25	25	1.99
15105356--15105698	170	2.0	170	86	1	481	23	28	28	19	1.98
15106383--15106435	26	2.0	26	92	0	88	28	15	24	32	1.95
15107269--15107321	26	2.0	26	92	0	88	26	20	24	28	1.99
15105526--15108995	888	3.9	888	86	2	4703	25	23	24	26	2.00
15109005--15109057	26	2.0	26	92	0	88	28	18	24	28	1.98
15109036--15109378	170	2.0	170	84	3	449	24	27	27	19	1.99
15110063--15110115	26	2.0	26	96	0	97	26	15	26	32	1.95
15110958--15111010	26	2.0	26	88	0	79	28	20	22	28	1.99
15111208--15122880	890	13.0	888	81	6	12864	25	23	24	26	2.00
15112280--15112336	26	2.2	26	81	9	64	28	3	15	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15112539--15112574	12	3.1	11	88	11	54	33	16	33	16	1.92
15112878--15112930	26	2.0	26	96	0	97	26	22	24	26	2.00
15113768--15113818	26	2.0	26	96	0	93	29	17	23	29	1.97
15112640--15151509	890	43.3	888	75	10	26232	25	23	24	26	2.00
15114656--15114708	26	2.0	26	92	0	88	26	20	24	28	1.99
15115547--15115599	26	2.0	26	88	0	79	26	15	26	32	1.95
15116437--15116486	26	1.9	26	87	0	73	32	20	20	28	1.97
15118209--15118261	26	2.0	26	89	7	81	26	15	26	32	1.95
15119097--15119149	26	2.0	26	88	0	79	26	16	26	30	1.97
15121747--15121799	26	2.0	26	88	0	79	32	16	24	26	1.97
15122663--15123037	159	2.4	159	87	0	516	21	29	29	18	1.97
15123690--15123740	26	2.0	26	92	0	84	27	15	27	29	1.96
15125886--15125936	26	2.0	26	96	0	93	29	19	25	25	1.99
15126768--15126820	26	2.0	26	96	0	97	26	22	24	26	2.00
15127619--15127671	26	2.0	26	96	0	97	28	20	26	24	1.99
15128316--15128347	12	2.7	12	95	0	55	34	18	34	12	1.89
15129368--15129420	26	2.0	26	96	0	97	28	20	24	26	1.99
15133723--15133774	25	2.0	26	85	3	70	26	19	25	28	1.98
15134598--15134655	26	2.2	26	93	3	98	25	20	27	25	1.99
15135491--15135543	26	2.0	26	92	0	88	22	20	28	28	1.99
15137261--15137310	26	1.9	26	100	0	100	32	20	24	24	1.98
15138144--15151509	889	15.0	887	79	7	13274	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15139884--15139936	26	2.0	26	88	0	79	28	16	24	30	1.97
15140773--15140825	26	2.0	26	100	0	106	26	20	26	26	1.99
15142533--15142585	26	2.0	26	88	0	79	28	16	26	28	1.97
15143428--15143480	26	2.0	26	88	0	79	26	15	26	32	1.95
15144317--15144366	26	1.9	26	87	0	73	30	18	24	28	1.97
15146079--15146131	26	2.0	26	100	0	106	26	20	26	26	1.99
15146968--15147020	26	2.0	26	100	0	106	26	20	26	26	1.99
15146966--15147364	185	2.2	185	87	0	564	21	29	28	21	1.99
15148006--15148058	26	2.0	26	96	0	97	28	20	26	24	1.99
15149714--15149766	26	2.0	26	96	0	97	26	22	26	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160