genome.fa.s334.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  74  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14943936--14944011	23	3.3	24	77	14	79	50	1	1	47	1.18
14943979--14944060	31	2.7	32	78	16	93	51	1	0	47	1.08
14943960--14944055	11	9.1	11	74	20	73	48	2	0	48	1.13
14943987--14944055	20	3.4	20	75	16	52	50	1	0	47	1.09
14944010--14944066	14	3.9	14	72	17	53	47	1	0	50	1.11
14944572--14944702	26	5.2	26	67	23	75	47	1	2	48	1.23
14944669--14944700	17	1.9	17	93	6	57	56	0	0	43	0.99
14945696--14945740	13	3.5	13	78	3	56	53	2	0	44	1.13
14945795--14945831	15	2.5	15	91	8	58	45	2	0	51	1.15
14946109--14946165	22	2.6	22	78	10	64	49	1	1	47	1.22
14946109--14946166	14	4.1	14	78	14	57	50	1	1	46	1.22
14946722--14946764	18	2.3	19	80	8	52	39	2	2	55	1.25
14946807--14946872	26	2.5	26	79	13	64	51	6	3	39	1.42
14947082--14947117	16	2.2	17	90	5	56	47	5	0	47	1.25
14947373--14947424	21	2.4	22	77	22	56	46	1	0	51	1.12
14947373--14947438	33	1.9	35	84	6	91	45	1	0	53	1.09
14948012--14948069	14	4.2	14	73	20	50	46	0	0	53	1.00
14948171--14948222	24	2.3	22	83	6	68	50	0	0	50	1.00
14948274--14948345	23	3.0	23	77	4	72	41	1	2	54	1.23
14948317--14948391	34	2.2	33	82	13	91	48	2	0	49	1.15
14948696--14948893	9	20.1	10	66	26	52	48	1	1	48	1.20
14948747--14948852	31	3.5	29	75	16	92	47	1	0	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14948773--14948860	42	2.1	42	80	14	103	47	1	0	51	1.08
14948772--14948856	16	5.2	17	66	22	56	47	1	0	51	1.08
14948839--14948912	4	17.8	4	72	22	55	50	1	2	45	1.24
14948839--14949028	27	7.0	28	70	23	106	48	1	3	46	1.27
14949329--14949426	46	2.2	45	83	10	128	46	0	2	51	1.12
14949362--14949426	24	3.0	21	70	16	60	49	0	0	50	1.00
14949503--14949556	22	2.4	22	87	6	72	46	0	3	50	1.19
14949505--14949561	21	2.7	22	81	5	64	47	0	3	49	1.18
14949503--14949565	22	2.8	23	83	9	67	49	0	3	47	1.17
14949611--14949669	26	2.3	27	78	21	65	47	0	0	52	1.00
14949600--14949726	63	2.0	66	81	7	154	48	0	2	48	1.14
14949857--14949892	17	2.1	17	89	0	54	52	0	2	44	1.15
14950167--14950242	28	2.7	28	76	9	75	47	0	2	50	1.15
14950188--14950250	21	3.0	22	73	13	62	50	0	0	49	1.00
14950188--14950246	18	3.4	18	73	17	61	49	0	0	50	1.00
14950328--14950388	29	2.0	30	87	6	88	49	0	3	47	1.18
14950526--14950560	18	1.9	18	88	0	52	51	2	2	42	1.31
14950639--14950707	10	7.4	10	69	26	53	49	1	0	49	1.09
14951902--14951998	29	3.5	28	75	14	78	49	1	3	46	1.24
14952187--14952237	21	2.4	21	87	9	68	49	1	0	49	1.12
14952290--14952328	15	2.4	16	87	8	53	51	0	0	48	1.00
14952272--14952328	20	2.9	19	78	17	62	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14952690--14952740	27	1.9	27	84	11	70	47	0	1	50	1.12
14952693--14952783	47	1.9	47	82	12	116	48	0	1	50	1.08
14953518--14953566	20	2.4	21	82	3	64	51	0	0	48	1.00
14953645--14953698	22	2.4	22	87	6	72	46	0	3	50	1.19
14953647--14953703	21	2.7	22	81	5	64	47	0	3	49	1.18
14953645--14953707	22	2.8	23	83	9	67	49	0	3	47	1.17
14953752--14953810	26	2.3	27	78	21	65	47	0	0	52	1.00
14953725--14953827	30	3.3	30	77	12	84	52	0	0	45	1.13
14953999--14954034	17	2.1	17	89	0	54	52	0	2	44	1.15
14954280--14954321	22	1.9	22	90	9	68	45	2	4	47	1.36
14954308--14954371	21	3.0	22	73	8	62	50	1	0	48	1.10
14954616--14954650	18	1.9	18	88	0	52	51	2	2	42	1.31
14955941--14956000	14	3.9	16	76	12	63	50	0	1	48	1.11
14956223--14956273	21	2.4	21	87	9	68	49	1	0	49	1.12
14956326--14956364	15	2.4	16	87	8	53	51	0	0	48	1.00
14956308--14956364	20	2.9	19	78	17	62	50	0	0	49	1.00
14956725--14956775	27	1.9	27	84	11	70	47	0	1	50	1.12
14956728--14956818	47	1.9	47	82	12	116	48	0	1	50	1.08
14957515--14957612	46	2.2	45	83	10	128	46	0	2	51	1.12
14957548--14957612	24	3.0	21	70	16	60	49	0	0	50	1.00
14957689--14957742	22	2.4	22	87	6	72	46	0	3	50	1.19
14957691--14957747	21	2.7	22	81	5	64	47	0	3	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14957689--14957751	22	2.8	23	83	9	67	49	0	3	47	1.17
14957797--14957855	26	2.3	27	78	21	65	47	0	0	52	1.00
14957786--14957912	63	2.0	66	81	7	154	48	0	2	48	1.14
14958042--14958077	17	2.1	17	89	0	54	52	0	2	44	1.15
14958322--14958363	22	1.9	22	90	9	68	45	2	4	47	1.36
14958354--14958401	20	2.6	18	78	15	53	47	2	0	50	1.12
14958656--14958690	18	1.9	18	88	0	52	51	2	2	42	1.31
14959979--14960038	14	3.9	16	76	12	63	50	0	1	48	1.11
14960262--14960312	21	2.4	21	87	9	68	49	1	0	49	1.12
14960276--14960314	15	2.5	16	83	4	53	48	0	0	51	1.00
14960366--14960404	15	2.4	16	87	8	53	51	0	0	48	1.00
14960348--14960404	20	2.9	19	78	17	62	50	0	0	49	1.00
14960766--14960816	27	1.9	27	84	11	70	47	0	1	50	1.12
14960769--14960859	47	1.9	47	82	12	116	48	0	1	50	1.08
14961357--14961454	40	2.4	41	73	13	103	44	1	3	51	1.24
14961552--14961649	46	2.2	45	83	10	128	46	0	2	51	1.12
14961585--14961649	24	3.0	21	70	16	60	49	0	0	50	1.00
14961726--14961779	22	2.4	22	87	6	72	46	0	3	50	1.19
14961728--14961784	21	2.7	22	81	5	64	47	0	3	49	1.18
14961726--14961788	22	2.8	23	83	9	67	49	0	3	47	1.17
14968014--14968274	127	2.1	125	83	2	317	38	17	14	29	1.89
14968592--14969616	449	2.3	450	83	9	1229	38	18	13	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14969480--14969741	128	2.1	125	83	3	319	37	17	14	30	1.90
14970979--14971240	128	2.1	125	83	3	319	37	17	14	30	1.90
14972477--14972739	127	2.1	127	83	2	323	37	17	15	30	1.90
14973977--14974238	128	2.1	125	83	3	319	37	17	14	30	1.90
14975013--14976977	894	2.2	890	83	9	2389	38	18	12	30	1.88
14976843--14977103	126	2.1	126	83	2	319	37	17	14	30	1.90
14976385--14977567	585	2.0	579	81	6	1375	39	18	12	29	1.88
14976969--14978628	443	3.7	440	84	7	1880	38	18	12	30	1.88
14978354--14979514	583	2.0	569	81	7	1328	38	18	12	30	1.88
14979796--14981354	479	3.3	475	94	1	2610	38	18	13	30	1.89
14982247--14983850	454	3.5	454	88	3	2232	38	17	12	31	1.87
14985300--14985547	126	2.0	126	84	6	333	41	16	11	30	1.84
14985512--14985741	126	1.8	128	86	1	338	36	15	12	36	1.84
14986676--14989496	924	3.1	917	86	4	3746	39	16	12	31	1.85
14986676--14989496	453	6.1	462	85	5	3529	39	16	12	31	1.85
14989534--14990491	502	1.9	501	82	4	1207	40	17	11	31	1.85
14990023--14991545	476	3.2	475	88	4	2254	39	17	11	31	1.85
14992874--14996708	480	7.9	479	80	11	3945	38	18	13	30	1.88
14996547--14996908	200	1.8	200	88	2	557	35	16	12	35	1.86
14998645--15005096	480	13.2	480	77	12	5404	38	18	12	30	1.88
14998140--15005096	960	7.1	960	76	12	6054	38	18	12	30	1.88
15002483--15005096	959	2.7	960	95	1	4712	38	18	12	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15004986--15005221	127	1.9	127	83	4	316	39	17	11	31	1.86
15005097--15006181	477	2.3	474	87	2	1566	40	18	11	29	1.86
15006063--15006295	126	1.8	126	83	1	306	37	16	12	33	1.87
15007045--15007095	26	2.0	26	96	0	93	33	7	25	33	1.85
15007546--15007661	59	2.0	59	94	0	205	24	18	8	49	1.75
15008753--15008905	45	3.4	45	87	0	198	17	28	34	19	1.95
15009388--15009440	26	2.0	26	100	0	106	26	26	20	26	1.99
15010286--15010338	26	2.0	26	89	7	81	28	22	18	30	1.98
15009088--15011972	888	3.2	886	87	3	4158	25	25	24	24	2.00
15017574--15017626	26	2.0	26	92	0	88	28	22	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160