genome.fa.s334.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  94  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17778824--17778871	22	2.1	24	85	14	66	20	0	6	72	1.05
17779049--17779084	11	3.3	11	88	0	54	86	0	2	11	0.68
17779938--17779995	3	19.3	3	79	10	57	62	3	3	31	1.29
17780484--17780628	60	2.4	60	80	0	173	34	13	28	23	1.92
17780770--17780988	86	2.6	86	80	3	210	37	12	19	30	1.89
17781096--17781154	27	2.2	27	84	0	82	44	11	27	16	1.83
17781936--17781981	13	3.5	13	87	0	65	0	13	4	82	0.81
17781936--17781981	12	3.8	12	82	5	56	0	13	4	82	0.81
17782338--17782367	16	1.9	15	93	6	51	0	13	0	86	0.57
17782284--17782416	61	2.2	59	85	5	176	12	15	11	60	1.60
17785987--17786028	21	1.9	21	85	9	57	23	0	7	69	1.13
17786617--17786672	19	2.9	20	76	7	62	42	19	1	35	1.62
17787094--17787162	3	23.3	3	88	2	104	63	1	2	31	1.18
17788272--17788317	21	2.2	21	92	0	74	45	0	15	39	1.46
17788371--17788414	11	3.8	11	84	6	52	18	9	0	72	1.10
17793271--17793321	16	3.2	16	88	2	77	19	3	11	64	1.41
17794279--17794340	3	20.3	3	93	3	106	32	0	1	66	1.02
17795815--17795881	34	2.0	34	88	5	100	19	4	17	58	1.56
17804837--17804999	76	2.1	79	79	10	174	42	3	9	44	1.54
17805081--17805113	7	4.7	7	96	0	57	39	0	0	60	0.97
17811690--17811733	20	2.2	20	88	4	63	38	11	11	38	1.77
17813342--17813370	14	2.1	14	100	0	58	34	13	31	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17813545--17813586	17	2.5	17	92	3	68	45	4	4	45	1.45
17815224--17815300	32	2.4	32	87	6	104	48	11	7	32	1.68
17817224--17817275	17	2.7	18	78	18	52	30	3	7	57	1.45
17817405--17817451	16	3.0	15	84	12	51	80	0	2	17	0.80
17817765--17817838	31	2.4	31	86	4	96	44	16	10	28	1.81
17818311--17818386	3	26.3	3	81	7	95	64	2	2	30	1.21
17818318--17818389	11	6.4	11	86	12	101	63	1	2	31	1.17
17818455--17818501	15	3.1	15	84	0	58	65	10	0	23	1.23
17818447--17818488	18	2.3	18	95	0	75	66	16	0	16	1.25
17818461--17818506	3	15.3	3	90	0	56	65	6	0	28	1.17
17818545--17818607	26	2.4	26	81	0	81	31	25	23	19	1.98
17818936--17819560	237	2.6	236	80	5	695	46	15	20	17	1.84
17818817--17819596	356	2.2	356	81	4	894	47	15	19	17	1.83
17818750--17819596	119	7.1	119	80	3	711	46	15	19	17	1.84
17822020--17822187	62	2.7	61	78	6	212	34	13	6	45	1.70
17822121--17822282	77	2.1	74	77	10	182	36	8	6	49	1.57
17822321--17822354	12	2.9	12	86	4	52	73	8	0	17	1.08
17822563--17822604	8	5.4	8	85	5	50	0	33	0	66	0.92
17822967--17822996	13	2.3	13	94	0	51	0	10	0	90	0.47
17822967--17822996	15	2.1	14	93	6	51	0	10	0	90	0.47
17823661--17823728	26	2.4	30	76	13	74	47	1	1	50	1.19
17823795--17823836	16	2.5	17	76	3	50	38	2	4	54	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17826418--17826743	138	2.3	138	80	4	350	50	14	9	25	1.72
17827832--17827881	25	2.0	25	92	3	84	58	16	2	24	1.49
17828179--17828265	7	11.6	7	70	22	52	78	5	2	13	1.03
17828176--17828232	23	2.4	25	86	13	84	77	1	3	17	1.00
17828196--17828256	22	2.7	22	82	10	70	78	6	1	13	1.01
17828227--17828271	13	3.3	13	87	6	63	80	11	0	8	0.92
17828224--17828291	26	2.6	26	76	17	68	76	7	1	14	1.07
17833074--17833119	21	2.2	21	88	0	65	50	0	0	50	1.00
17833076--17833118	11	4.0	11	81	6	52	51	0	0	48	1.00
17834237--17834295	29	2.0	29	83	6	75	20	8	11	59	1.58
17837528--17837586	30	2.0	30	83	6	75	54	11	8	25	1.65
17858293--17858340	21	2.3	21	89	7	71	31	12	4	52	1.58
17860425--17860626	107	1.9	107	98	0	395	24	16	9	49	1.75
17865481--17865541	23	2.6	24	86	2	88	40	18	11	29	1.85
17865595--17865630	18	2.0	18	94	0	63	75	0	8	16	1.04
17867410--17867444	3	11.7	3	93	0	61	65	0	2	31	1.07
17868816--17869221	146	2.8	145	80	4	334	41	11	11	35	1.77
17871079--17871504	211	2.0	211	89	0	656	43	15	11	28	1.83
17874610--17874638	12	2.3	13	94	5	51	3	6	0	89	0.57
17874985--17875022	19	2.0	20	89	5	60	55	10	5	28	1.56
17877956--17877995	21	1.9	21	94	0	71	55	20	5	20	1.62
17878796--17878837	15	2.7	16	81	7	50	57	7	14	21	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17880439--17880474	11	3.2	11	88	7	54	2	11	0	86	0.68
17886314--17886367	21	2.6	21	82	8	67	53	1	3	40	1.29
17886576--17886615	18	2.2	18	86	4	53	40	0	0	60	0.97
17900983--17901034	25	2.1	25	92	0	86	25	19	0	55	1.43
17903053--17903108	20	2.8	20	77	2	58	42	17	12	26	1.85
17903047--17903120	21	3.6	21	77	3	78	41	13	12	32	1.81
17903048--17903153	42	2.6	41	78	1	113	39	17	11	31	1.85
17904690--17904732	22	2.1	20	83	12	52	48	0	16	34	1.46
17906886--17906926	15	2.7	15	80	0	55	36	0	2	60	1.10
17912789--17912823	13	2.6	14	86	13	56	54	8	5	31	1.54
17912955--17913014	22	2.8	22	87	2	77	71	0	6	21	1.08
17917301--17917389	26	3.4	26	76	6	99	19	24	23	32	1.97
17917301--17917406	52	2.0	52	83	3	133	18	27	23	30	1.98
17917428--17917528	3	34.3	3	78	7	55	20	1	9	67	1.30
17917580--17917649	3	23.7	3	94	2	124	32	0	1	65	1.01
17917655--17917697	22	1.9	23	95	4	79	0	20	4	74	1.00
17918054--17918094	20	2.0	20	85	4	55	21	4	36	36	1.75
17918138--17918206	31	2.2	31	84	0	84	26	5	20	47	1.72
17918659--17918695	17	2.2	17	90	9	58	56	8	2	32	1.43
17918697--17918764	20	3.2	21	75	12	59	51	8	2	36	1.48
17918717--17918756	20	1.9	21	90	10	64	52	12	5	30	1.60
17931543--17931614	16	4.4	16	74	11	56	77	0	16	5	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17931556--17931614	17	3.6	16	76	15	57	81	0	13	5	0.85
17932202--17932303	49	2.1	48	87	5	143	32	9	24	33	1.88
17932316--17932359	23	1.9	23	85	0	61	43	4	25	27	1.74
17932685--17932742	21	2.8	19	84	10	62	41	5	13	39	1.67
17933089--17933524	42	10.3	42	84	3	509	23	11	17	46	1.82
17933766--17933798	14	2.3	15	89	5	50	24	3	6	66	1.28
17934465--17934510	16	2.6	18	86	10	60	19	0	6	73	1.04
17934549--17934761	67	3.1	65	78	12	205	53	5	6	34	1.51
17934827--17934884	28	2.1	28	96	0	107	44	8	13	32	1.75
17937627--17937675	20	2.4	20	77	16	55	48	18	10	22	1.77
17946235--17946361	68	1.9	68	90	3	202	35	8	16	39	1.79
17947098--17947144	24	2.0	24	84	16	62	55	0	2	42	1.12
17947265--17947440	49	3.3	54	69	14	132	44	13	15	25	1.84
17947241--17947582	160	2.1	159	81	8	392	45	12	15	25	1.82
17947369--17947490	56	2.2	55	83	1	145	43	13	16	26	1.85
17947935--17948055	50	2.5	48	85	6	154	26	9	19	43	1.82
17948056--17948195	71	2.0	71	84	2	183	31	10	11	46	1.74
17949395--17949552	42	3.7	41	73	14	156	25	13	17	43	1.86
17951039--17951071	2	16.5	2	100	0	66	48	0	0	51	1.00
17951292--17951346	25	2.3	23	90	6	83	29	3	10	56	1.51
17952067--17952093	7	3.9	7	100	0	54	70	0	0	29	0.88
17952156--17952193	16	2.4	16	91	8	60	55	10	0	34	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17952319--17952371	2	26.5	2	96	0	97	50	0	0	49	1.00
17952904--17952980	37	2.1	37	95	0	136	53	14	7	24	1.67
17958553--17958618	34	1.9	34	96	0	123	25	12	9	53	1.67
17959911--17959961	2	25.5	2	100	0	102	50	49	0	0	1.00
17969305--17969345	21	2.0	21	85	0	55	46	7	9	36	1.65
17969794--17969831	18	2.1	18	85	9	51	57	0	0	42	0.98
17969984--17970050	21	3.2	21	78	14	66	50	2	0	46	1.16
17971854--17971898	22	2.0	22	95	0	81	28	22	11	37	1.88
17973675--17973971	162	1.8	161	83	9	401	41	16	9	32	1.80
17973675--17974051	161	2.3	161	81	8	396	42	15	9	31	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160