genome.fa.s334.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  99  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18724461--18724786	167	2.0	167	93	1	564	39	7	8	44	1.62
18725744--18725796	20	2.9	19	79	15	60	47	0	0	52	1.00
18735159--18735231	36	2.0	36	100	0	146	36	10	32	19	1.86
18737096--18737141	21	2.2	21	96	3	85	50	0	0	50	1.00
18737093--18737150	20	3.0	20	79	18	68	48	0	0	51	1.00
18737131--18737176	14	3.0	16	81	15	53	60	0	0	39	0.97
18737131--18737164	16	2.1	15	89	10	50	58	0	0	41	0.98
18741134--18741167	12	2.8	12	95	0	59	38	0	0	61	0.96
18741159--18741209	21	2.5	21	93	3	86	49	0	0	50	1.00
18751367--18751416	26	2.0	26	88	7	77	14	6	10	70	1.33
18751440--18751480	18	2.3	18	87	8	57	29	0	2	68	1.03
18751426--18751479	17	3.3	15	78	16	54	25	1	3	68	1.16
18751500--18751540	5	8.0	5	87	12	57	78	2	0	19	0.87
18751500--18751540	11	4.0	10	85	14	57	78	2	0	19	0.87
18751500--18751540	22	2.0	20	90	9	64	78	2	0	19	0.87
18751684--18751720	18	2.1	18	89	0	56	72	0	5	21	1.04
18752045--18752110	10	6.3	10	79	8	69	72	4	1	21	1.10
18754266--18754310	19	2.4	19	85	7	56	20	2	31	46	1.62
18754284--18754326	20	2.2	19	83	4	50	18	2	27	51	1.59
18754444--18754490	19	2.3	20	89	7	69	17	0	38	44	1.48
18755543--18755571	13	2.3	13	94	5	51	0	17	0	82	0.66
18755950--18756293	144	2.4	142	79	9	342	40	17	10	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18756838--18756875	18	2.1	19	85	14	53	2	2	13	81	0.90
18757124--18757156	17	1.9	17	100	0	66	48	12	9	30	1.71
18757228--18757403	49	3.6	48	83	6	167	45	13	10	30	1.77
18757250--18757451	97	2.1	97	81	9	236	44	12	12	30	1.80
18757250--18757416	49	3.4	48	82	7	176	44	13	11	31	1.79
18758313--18758397	22	3.8	23	81	10	88	3	24	1	70	1.10
18758322--18758397	23	3.4	21	80	12	73	2	26	1	69	1.09
18760405--18760486	24	3.2	24	78	18	78	1	19	3	75	1.02
18760407--18760492	18	4.9	17	76	12	77	1	18	3	76	0.99
18760439--18760486	13	3.8	13	94	5	82	0	14	4	81	0.84
18761258--18761302	11	3.9	12	88	8	58	6	11	0	82	0.84
18761253--18761311	12	5.0	11	81	10	64	5	13	0	81	0.85
18761253--18761311	23	2.5	22	82	17	66	5	13	0	81	0.85
18761258--18761311	16	3.2	16	78	14	56	5	11	0	83	0.80
18763258--18763570	157	2.0	157	91	1	511	37	10	23	28	1.88
18766729--18766861	30	4.3	30	66	11	79	40	16	3	39	1.67
18766761--18766927	31	5.4	31	67	11	83	40	15	2	41	1.60
18766717--18766904	94	2.0	94	100	0	376	38	15	3	42	1.64
18766772--18766929	30	5.1	30	69	13	106	39	15	2	42	1.61
18768535--18768573	14	2.8	14	77	14	53	43	5	0	51	1.24
18776532--18776564	2	16.5	2	100	0	66	48	0	0	51	1.00
18779704--18779742	3	12.7	3	94	5	69	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18784386--18784445	29	2.1	29	80	0	66	31	11	16	40	1.85
18784518--18784625	30	3.6	30	74	7	76	34	9	20	36	1.85
18784694--18784806	29	3.9	28	77	2	100	37	12	15	34	1.86
18784695--18784924	29	7.9	29	68	8	90	36	12	17	34	1.87
18784759--18784953	59	3.3	60	74	7	184	36	11	15	35	1.85
18785061--18785177	29	4.0	29	71	8	94	28	8	26	36	1.86
18785221--18785339	47	2.5	46	82	6	141	36	12	10	40	1.78
18785660--18785758	40	2.5	40	81	3	119	26	16	13	44	1.84
18790070--18790182	26	4.3	25	72	17	88	52	1	1	44	1.22
18790575--18790609	17	2.1	17	88	0	52	37	5	8	48	1.58
18791426--18791471	23	2.1	21	84	8	56	45	2	15	36	1.58
18792097--18792122	3	8.7	3	100	0	52	34	30	0	34	1.58
18792523--18792577	20	2.8	19	75	5	56	69	0	3	27	1.05
18792955--18793066	37	3.0	37	94	1	188	54	12	8	24	1.66
18793883--18795396	767	2.0	765	94	1	2472	41	9	9	38	1.72
18800111--18800151	22	2.0	20	90	9	64	14	7	9	68	1.39
18803022--18804777	875	2.0	876	99	0	3487	40	8	12	38	1.74
18806124--18806217	47	2.0	47	87	4	136	51	12	9	26	1.71
18807087--18807300	106	2.0	105	90	0	338	38	9	12	39	1.76
18820373--18820428	7	8.7	7	75	16	59	71	0	25	3	1.02
18820381--18820450	20	3.5	20	75	14	63	72	1	22	2	1.05
18820373--18820449	24	3.4	23	75	20	72	74	1	22	2	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18820374--18820443	36	1.9	38	83	13	94	72	1	22	2	1.05
18828608--18828656	25	2.0	25	91	0	80	24	20	12	42	1.86
18833630--18833656	11	2.5	11	100	0	54	18	22	0	59	1.38
18837768--18837814	23	2.0	23	95	0	85	29	10	12	46	1.76
18849895--18849932	12	3.0	13	84	3	51	78	13	2	5	1.02
18862233--18862276	22	2.0	22	90	0	70	34	11	11	43	1.77
18866128--18866171	22	2.0	22	95	0	79	31	11	13	43	1.80
18868674--18868876	94	2.2	94	92	0	336	48	22	6	22	1.74
18876858--18876902	21	2.2	20	84	15	56	44	6	13	35	1.70
18879328--18879374	24	2.0	24	83	8	60	48	10	4	36	1.57
18881170--18881212	22	2.0	22	100	0	86	53	4	13	27	1.60
18882185--18882219	11	3.3	11	92	8	63	5	0	8	85	0.73
18882185--18882225	21	2.0	21	95	0	73	7	0	7	85	0.75
18882185--18882225	10	3.9	10	87	9	55	7	0	7	85	0.75
18882227--18882327	37	2.7	37	77	11	109	53	13	14	17	1.73
18882227--18882360	37	3.6	37	74	16	102	51	12	18	17	1.76
18882371--18882461	35	2.5	37	74	12	100	54	15	14	15	1.71
18882374--18882654	106	2.6	107	80	4	307	50	14	17	18	1.79
18882478--18882648	36	4.8	36	73	9	134	50	12	18	18	1.78
18882476--18882678	107	1.9	107	84	4	275	48	12	19	19	1.80
18882763--18882969	36	5.9	35	69	15	140	54	14	14	16	1.72
18882763--18882968	70	2.9	71	78	7	204	53	14	15	16	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18882869--18882966	35	2.8	36	78	4	101	57	12	13	17	1.66
18882834--18883064	107	2.1	107	79	10	247	53	14	14	17	1.73
18883011--18883081	36	2.0	36	82	0	88	50	14	15	19	1.77
18883176--18883351	71	2.5	71	73	11	171	48	13	19	18	1.81
18883828--18883897	28	2.6	27	77	4	79	30	11	21	37	1.89
18884101--18884292	80	2.4	80	83	4	228	30	11	16	41	1.85
18893312--18893369	3	19.3	3	92	0	98	31	1	1	65	1.13
18894977--18895025	19	2.5	19	80	3	62	24	14	14	46	1.81
18921441--18921492	22	2.4	22	83	6	61	28	9	13	48	1.74
18922730--18922772	17	2.3	19	88	11	63	11	0	41	46	1.40
18922761--18922983	7	32.6	7	76	9	167	18	0	36	44	1.53
18924163--18924209	10	4.7	10	86	0	67	29	17	17	36	1.92
18924495--18924532	10	4.0	10	90	6	53	2	0	10	86	0.66
18925280--18925392	10	10.8	10	73	14	68	1	23	0	75	0.90
18925318--18925428	10	11.2	9	70	17	69	2	20	0	76	0.91
18925288--18925380	32	2.7	34	75	11	91	2	22	0	75	0.91
18925317--18925426	20	5.4	19	73	12	85	2	20	0	76	0.91
18925450--18925500	10	4.7	11	83	9	61	1	13	0	84	0.71
18925463--18925500	17	2.3	16	86	8	58	0	10	0	89	0.49
18925451--18925505	11	5.0	11	84	6	58	1	12	1	83	0.80
18926110--18926145	7	5.1	7	96	0	54	44	19	13	22	1.86
18926932--18926967	16	2.4	15	86	13	56	0	22	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18926933--18926967	18	1.9	18	94	0	61	0	22	0	77	0.78
18927309--18927353	23	2.0	23	86	0	63	2	17	4	75	1.07
18927370--18927421	26	1.9	27	85	14	72	7	17	3	71	1.25
18932285--18932458	7	25.4	7	75	8	99	16	0	36	47	1.51
18932280--18932333	20	2.8	19	81	13	67	9	0	40	50	1.35
18937241--18937345	52	2.0	52	92	0	174	27	14	7	50	1.69
18942728--18942797	35	2.0	35	100	0	140	40	17	11	31	1.85
18947294--18947335	20	2.0	21	86	4	59	14	4	23	57	1.56
18952447--18952653	105	2.0	102	95	2	369	23	16	15	43	1.86
18954071--18954105	15	2.2	16	90	5	54	54	5	2	37	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160