genome.fa.s334.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  18  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5112380--5112601	14	15.7	14	64	17	52	67	4	3	25	1.23
5112539--5112602	7	9.7	7	77	19	57	76	4	0	18	0.95
5112517--5112602	26	3.2	26	77	15	86	73	5	3	17	1.18
5112790--5112860	35	2.0	35	97	0	133	61	5	4	28	1.37
5115741--5115822	12	6.5	12	72	15	58	65	1	4	28	1.20
5116079--5116173	16	6.0	16	83	4	104	49	29	1	20	1.56
5116088--5116139	7	6.7	7	77	18	50	53	23	0	23	1.46
5116087--5116187	15	6.5	15	80	8	87	48	25	1	23	1.61
5116087--5116187	31	3.2	29	75	12	94	48	25	1	23	1.61
5118001--5118053	20	2.6	19	85	8	70	16	13	1	67	1.31
5122126--5122170	10	4.8	9	89	5	63	86	6	0	6	0.70
5122126--5122172	15	3.4	14	85	8	69	87	6	0	6	0.68
5124661--5124746	22	3.9	22	74	6	75	26	22	18	32	1.97
5124666--5124759	44	2.1	44	84	0	116	28	23	17	30	1.97
5124833--5125149	109	2.9	109	83	5	363	23	17	17	42	1.88
5125035--5125080	22	2.1	22	87	0	65	32	23	13	30	1.93
5125233--5125275	22	2.0	22	86	9	61	27	20	18	32	1.96
5124959--5125363	198	2.1	196	84	7	518	22	19	18	40	1.92
5125159--5125676	109	4.9	109	80	8	584	23	20	16	39	1.92
5125450--5125492	22	2.0	22	85	0	59	27	23	18	30	1.98
5125536--5125588	22	2.4	22	87	3	70	30	20	15	33	1.93
5125737--5125779	22	2.0	22	95	0	77	25	23	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5125845--5125892	22	2.1	23	88	11	73	29	25	16	29	1.97
5126495--5126527	14	2.4	14	94	0	57	75	9	6	9	1.18
5127618--5127695	16	4.9	16	84	6	95	50	29	1	19	1.56
5127618--5127700	32	2.6	32	82	5	105	49	28	2	19	1.61
5128137--5128175	20	2.0	20	85	9	55	58	2	2	35	1.25
5129277--5129303	9	3.0	9	100	0	54	33	11	11	44	1.75
5142387--5142427	6	6.5	6	91	5	55	70	2	0	26	0.99
5142373--5142435	26	2.4	27	81	7	76	74	1	0	23	0.90
5142392--5142435	7	6.6	7	92	5	65	75	0	0	25	0.81
5142373--5142435	20	3.2	20	80	14	69	74	1	0	23	0.90
5142731--5142760	11	2.6	12	89	10	53	33	13	20	33	1.91
5146013--5146076	9	6.9	9	81	13	76	10	9	0	79	0.93
5146036--5146098	8	7.8	8	77	13	58	12	11	0	76	1.03
5146014--5146077	19	3.4	19	78	12	69	9	9	0	81	0.88
5148834--5148859	12	2.2	12	100	0	52	53	15	0	30	1.42
5148870--5148936	23	2.9	23	76	8	73	56	14	4	23	1.57
5154897--5155110	61	3.6	58	76	11	184	36	9	6	47	1.62
5155101--5155139	20	2.0	20	90	10	62	35	2	2	58	1.25
5156796--5156829	7	4.9	7	85	0	50	73	0	14	11	1.10
5164345--5164391	23	2.0	23	95	0	85	59	21	10	8	1.57
5169617--5169654	12	3.2	12	88	0	58	42	0	7	50	1.31
5173430--5173468	20	2.0	20	85	5	53	30	10	20	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5173811--5173866	27	2.0	28	86	10	80	17	0	8	73	1.08
5175739--5175772	18	1.9	17	94	5	59	29	0	0	70	0.87
5175740--5175772	12	2.8	12	86	4	50	30	0	0	69	0.88
5177103--5177145	12	3.7	12	78	15	54	69	0	0	30	0.88
5180056--5180136	30	2.7	30	76	5	74	17	1	28	53	1.52
5180086--5180129	21	2.0	23	86	8	65	22	0	25	52	1.48
5180085--5180138	22	2.4	22	81	12	65	18	0	31	50	1.48
5180109--5180208	44	2.3	43	77	8	103	17	0	32	51	1.46
5180141--5180208	15	4.7	15	72	18	63	17	0	29	52	1.45
5180739--5180789	20	2.5	20	81	12	59	21	3	3	70	1.20
5180827--5180873	24	2.0	24	83	8	60	63	10	4	21	1.43
5180883--5180929	21	2.2	22	85	11	62	72	12	2	12	1.21
5183909--5183949	21	1.9	21	85	5	55	63	2	21	12	1.40
5185656--5185680	2	12.5	2	100	0	50	48	0	0	52	1.00
5187815--5187860	2	23.0	2	95	0	83	47	0	2	50	1.13
5192345--5192386	13	3.2	13	80	6	50	52	0	0	47	1.00
5192349--5192425	37	2.1	38	82	7	95	53	0	0	46	1.00
5192346--5192410	15	4.6	15	74	14	50	55	0	0	44	0.99
5192353--5192435	37	2.4	34	75	13	87	51	0	0	48	1.00
5194530--5194559	6	5.0	6	100	0	60	33	16	50	0	1.46
5196188--5196231	2	22.0	2	100	0	88	0	50	0	50	1.00
5198176--5198202	7	3.9	7	100	0	54	14	25	29	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5199228--5199264	19	2.1	18	90	10	58	78	5	5	10	1.08
5202955--5202988	17	1.9	18	88	5	52	26	14	8	50	1.72
5204319--5204350	2	16.0	2	93	0	55	50	3	0	46	1.17
5205069--5205098	10	3.1	10	95	4	53	36	0	0	63	0.95
5205071--5205100	9	3.2	9	95	4	51	36	0	0	63	0.95
5214318--5214347	15	2.0	15	93	0	51	30	33	10	26	1.89
5224787--5224817	2	15.5	2	100	0	62	48	0	0	51	1.00
5226398--5226486	29	3.1	28	84	7	117	60	5	1	32	1.27
5227542--5227577	2	18.5	2	94	5	65	47	0	0	52	1.00
5229309--5229355	18	2.6	18	86	10	60	2	6	12	78	1.02
5229508--5229575	7	9.1	7	74	16	57	67	1	0	30	0.99
5238133--5238168	18	2.0	18	94	0	63	58	0	8	33	1.28
5238495--5238565	24	2.7	26	74	18	65	38	1	0	60	1.06
5258265--5258324	30	2.0	30	90	0	93	46	13	13	26	1.80
5261172--5261209	5	7.8	5	85	5	51	0	13	0	86	0.56
5261172--5261209	10	3.7	10	89	3	58	0	13	0	86	0.56
5265781--5265854	28	2.6	28	78	0	67	37	6	0	55	1.27
5273439--5273477	19	2.1	19	85	0	51	30	15	7	46	1.74
5280755--5280806	22	2.2	24	83	6	63	61	1	0	36	1.07
5281177--5281230	27	2.0	27	85	3	74	37	3	0	59	1.15
5281230--5281254	13	1.9	13	100	0	50	52	8	0	40	1.31
5286283--5286309	3	9.0	3	100	0	54	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5286569--5286610	2	21.0	2	95	0	75	47	0	50	2	1.14
5297035--5297085	26	1.9	27	88	4	77	21	19	17	41	1.91
5297512--5297665	76	2.0	75	86	3	211	23	11	29	35	1.90
5303162--5303203	21	2.0	21	81	9	50	47	2	11	38	1.53
5304017--5304056	2	20.0	2	100	0	80	50	0	0	50	1.00
5310241--5310511	148	1.8	149	82	7	352	16	36	26	20	1.94
5318919--5318965	20	2.3	21	89	7	71	48	0	0	51	1.00
5323820--5323865	19	2.3	19	85	7	56	50	2	6	41	1.40
5324768--5324824	25	2.3	25	78	6	62	73	5	7	14	1.21
5328190--5328225	15	2.5	15	95	4	65	0	0	11	88	0.50
5337026--5337455	234	1.8	233	84	3	594	30	18	13	37	1.89
5341298--5341364	33	2.0	33	100	0	134	35	22	11	29	1.90
5349485--5349560	24	3.2	22	78	15	64	46	2	1	50	1.24
5350623--5350655	15	2.1	17	88	11	52	30	0	3	66	1.06
5351170--5351199	16	1.9	16	93	6	53	86	6	0	6	0.70
5352029--5352060	15	2.2	15	94	5	57	56	6	12	25	1.59
5356250--5356295	2	23.0	2	81	0	56	43	2	6	47	1.41
5359477--5359580	41	2.5	41	90	3	156	34	12	16	36	1.86
5360961--5361418	59	7.7	57	83	10	580	43	8	14	33	1.76
5360957--5361418	116	3.9	117	90	5	659	43	8	14	33	1.76
5367959--5368343	193	2.0	192	93	1	662	37	13	10	37	1.80
5370332--5370377	22	2.1	21	84	4	56	54	15	2	28	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5371554--5371592	2	20.0	2	94	5	71	51	0	0	48	1.00
5371552--5371602	6	7.4	7	85	12	54	52	1	0	45	1.12
5372232--5372770	269	2.0	267	89	3	816	30	8	7	53	1.59
5373169--5373224	2	28.0	2	87	0	76	51	5	0	42	1.24
5377047--5377512	57	7.8	57	88	8	598	33	13	7	44	1.74
5377047--5377502	119	3.9	114	87	9	616	33	14	7	44	1.74
5377584--5377611	13	2.2	13	100	0	56	78	7	0	14	0.95
5378545--5378731	82	2.3	78	75	16	179	66	5	3	24	1.28
5378895--5378987	1	93.0	1	76	0	87	3	0	8	88	0.62
5378887--5378986	26	4.0	25	86	11	125	3	0	10	87	0.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160