genome.fa.s334.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  67  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13902553--13902615	25	2.4	27	84	5	76	15	6	22	55	1.63
13902777--13902829	23	2.3	23	86	0	70	24	5	0	69	1.09
13912589--13912642	23	2.3	24	83	3	65	31	0	3	64	1.11
13912901--13912949	6	7.8	6	78	17	55	0	2	16	81	0.78
13912902--13912964	27	2.4	27	82	12	69	0	4	15	79	0.90
13912898--13912964	21	3.2	20	83	10	82	0	4	14	80	0.86
13913021--13913360	35	9.7	35	71	9	208	53	10	18	17	1.72
13913084--13913362	70	4.0	68	78	5	263	53	11	19	16	1.72
13913165--13913381	70	3.1	70	82	2	274	53	12	16	16	1.72
13913469--13913728	35	7.4	34	72	11	154	53	10	17	19	1.72
13913728--13913787	22	2.7	22	77	12	68	30	23	11	35	1.90
13913968--13914197	66	3.5	65	75	6	187	27	14	21	36	1.92
13914081--13914187	33	3.3	31	75	19	94	24	14	22	39	1.91
13914229--13914314	33	2.6	33	72	3	84	39	17	13	29	1.88
13915229--13915287	10	6.1	9	79	14	57	3	13	1	81	0.90
13915237--13915284	15	3.2	15	77	8	53	4	14	2	79	0.98
13915911--13915959	25	2.0	25	87	0	71	46	2	34	16	1.58
13916526--13916573	14	3.4	14	83	13	62	4	14	0	81	0.84
13916513--13916573	15	4.1	14	80	18	61	4	16	0	78	0.91
13917341--13917442	49	2.1	49	85	5	136	28	24	7	39	1.83
13920492--13920550	26	2.2	25	85	8	73	66	3	3	27	1.24
13921565--13921627	25	2.4	27	84	10	78	19	11	22	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13923660--13923688	3	9.7	3	100	0	58	65	0	0	34	0.93
13923689--13923730	3	14.0	3	100	0	84	33	0	0	66	0.92
13929049--13929103	25	2.2	25	90	6	85	32	5	16	45	1.70
13929057--13929107	25	2.0	25	100	0	102	33	3	15	47	1.64
13929958--13930055	44	2.2	44	92	1	160	36	5	20	37	1.75
13931859--13932464	313	1.9	313	85	2	840	43	14	14	26	1.84
13932918--13933035	57	2.2	52	83	8	139	27	9	5	57	1.51
13942706--13942749	22	2.0	22	90	0	70	34	11	11	43	1.77
13943008--13943069	25	2.5	25	86	2	90	20	22	16	40	1.91
13946789--13946832	22	2.0	22	90	0	70	29	11	15	43	1.82
13954618--13954661	19	2.2	19	81	18	54	45	2	2	50	1.27
13954620--13954661	21	2.0	20	86	13	59	42	2	2	52	1.27
13955801--13955843	22	1.9	23	90	4	70	34	6	0	58	1.25
13957293--13957342	17	3.1	16	77	8	57	66	0	2	32	1.03
13958582--13958747	71	2.3	72	79	5	183	50	2	4	42	1.36
13958779--13958856	37	2.1	38	85	7	106	52	2	0	44	1.14
13968105--13968272	90	1.9	90	88	0	255	29	24	17	27	1.97
13968886--13968918	17	2.0	17	94	5	59	21	0	6	72	1.05
13980090--13980139	20	2.5	19	87	12	73	68	10	18	4	1.34
13980090--13980139	19	2.5	20	83	9	66	68	10	18	4	1.34
13985654--13985700	16	3.0	16	82	14	62	70	6	8	14	1.32
13986878--13986986	35	3.2	34	81	5	139	25	19	5	49	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13986873--13987007	35	3.8	37	79	13	115	25	20	5	48	1.71
13986898--13987064	77	2.2	75	77	9	169	24	19	7	48	1.75
13987015--13987204	70	2.7	69	77	8	186	24	20	10	44	1.83
13987158--13987235	35	2.2	35	83	0	93	23	19	8	48	1.76
13987575--13987621	25	2.0	23	91	8	76	44	27	10	17	1.81
13987694--13987750	30	1.9	30	100	0	114	35	7	17	40	1.77
13990306--13990331	3	8.7	3	100	0	52	69	0	0	30	0.89
14004126--14004165	20	2.0	20	90	0	62	32	10	5	52	1.56
14006356--14006396	20	2.0	20	100	0	82	56	19	4	19	1.60
14006419--14006509	31	2.9	32	74	9	89	63	12	2	21	1.38
14010153--14010207	13	4.2	13	83	4	67	54	32	0	12	1.38
14010157--14010212	26	2.2	26	87	3	78	53	30	0	16	1.43
14010172--14010233	25	2.4	25	78	10	63	58	27	0	14	1.37
14010374--14010431	28	2.1	27	84	12	75	25	17	8	48	1.75
14011392--14011474	25	3.3	25	87	0	121	24	13	10	51	1.72
14022950--14023090	48	3.0	47	77	7	149	29	12	12	46	1.77
14022984--14023199	108	2.0	108	99	0	423	28	12	12	46	1.77
14023117--14023498	47	8.0	47	75	12	291	30	14	13	40	1.85
14023168--14023499	49	6.9	48	77	11	256	30	15	13	40	1.85
14023117--14023499	96	4.0	92	78	12	321	30	14	13	40	1.85
14023828--14023868	20	2.0	20	95	0	73	51	17	12	19	1.76
14024278--14024543	142	1.9	141	81	6	324	33	12	10	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14024876--14024917	16	2.8	15	79	10	50	78	2	16	2	0.96
14025974--14026022	18	2.7	18	84	9	55	46	36	4	12	1.60
14025992--14026080	20	4.5	20	72	12	67	49	31	1	17	1.55
14027217--14027265	22	2.2	22	88	0	71	75	6	0	18	1.00
14027575--14027611	14	2.5	16	83	16	53	48	2	0	48	1.15
14033792--14033839	24	2.0	24	87	0	69	39	20	2	37	1.65
14036371--14036422	26	2.0	27	92	3	88	32	28	3	34	1.76
14038533--14038571	19	2.1	19	95	0	69	53	12	15	17	1.72
14041613--14041915	158	1.9	158	81	7	366	33	16	9	39	1.82
14041613--14041975	159	2.3	157	79	7	364	32	17	9	39	1.82
14047441--14049267	159	11.5	158	71	9	847	32	18	10	39	1.84
14047665--14048428	317	2.4	317	78	6	712	32	19	9	37	1.85
14047605--14050105	316	7.9	312	70	11	816	32	17	10	39	1.84
14047619--14048669	317	3.3	317	76	5	679	32	18	10	38	1.85
14048957--14049238	156	1.8	157	80	6	340	31	20	9	38	1.84
14049716--14050062	158	2.2	157	78	10	350	33	15	12	38	1.86
14051022--14051072	26	2.0	26	81	14	61	15	5	35	43	1.71
14053124--14053210	43	2.0	43	95	0	156	43	21	6	27	1.78
14054097--14054204	2	56.5	2	70	12	75	43	3	5	47	1.44
14056539--14056735	22	9.0	22	70	8	114	37	16	9	36	1.81
14056626--14056735	44	2.5	44	82	2	141	37	17	9	36	1.81
14058715--14058796	40	2.0	40	92	0	137	31	32	8	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14059409--14059443	16	2.2	16	89	0	52	40	11	14	34	1.82
14062179--14062221	20	2.1	20	87	12	61	32	18	0	48	1.48
14066905--14066940	3	12.0	3	100	0	72	66	0	0	33	0.92
14068584--14068626	13	3.2	14	83	6	54	48	9	11	30	1.71
14073046--14073076	7	4.4	7	95	0	53	12	0	64	22	1.27
14074051--14074126	34	2.2	34	85	0	107	44	0	3	51	1.20
14075812--14075970	80	2.0	80	85	2	212	25	18	16	40	1.90
14089063--14089116	25	2.1	26	83	13	67	44	5	18	31	1.73
14093059--14093091	5	6.8	5	93	6	59	18	39	0	42	1.50
14095058--14095082	11	2.3	11	100	0	50	16	24	0	60	1.36
14097431--14097485	27	2.0	27	96	0	101	38	16	10	34	1.84
14108062--14108598	261	2.1	261	99	0	1056	23	10	12	53	1.69
14110028--14110199	82	2.0	83	83	6	213	31	15	15	37	1.89
14116061--14116101	22	1.9	21	85	5	55	70	4	21	2	1.18
14119079--14119122	23	1.9	23	81	9	54	22	13	13	50	1.77
14119514--14119569	26	2.1	27	90	3	87	28	5	23	42	1.76
14120991--14121050	29	2.1	28	84	3	75	11	3	18	66	1.36
14121332--14121463	7	19.6	7	67	16	55	46	33	1	18	1.59
14121336--14121374	20	2.0	20	94	0	69	48	30	0	20	1.50
14121497--14121561	18	3.7	18	69	20	57	27	15	6	50	1.67
14124108--14124160	27	2.0	27	96	0	97	41	15	3	39	1.65
14134696--14134861	65	2.5	65	83	0	197	19	15	13	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14134750--14134916	66	2.5	66	82	0	183	19	14	13	52	1.75
14134903--14135045	64	2.2	64	81	4	164	25	19	7	47	1.76
14135637--14135667	3	10.3	3	92	0	53	32	3	0	64	1.09
14136796--14136820	13	1.9	13	100	0	50	56	8	0	36	1.29
14143556--14143601	23	2.1	21	84	8	56	73	2	17	6	1.14
14143560--14143602	20	2.2	20	83	8	52	74	2	16	6	1.14
14145107--14145139	15	2.3	15	89	5	50	42	3	9	45	1.51
14145118--14145161	21	2.0	22	86	4	63	36	0	9	54	1.32
14145346--14145442	20	4.9	20	67	14	67	31	6	10	51	1.61
14145580--14145608	13	2.3	13	94	5	51	13	0	0	86	0.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160