genome.fa.s334.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  88  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16775887--16775932	17	2.6	17	93	3	74	0	2	19	78	0.86
16775888--16775932	11	4.0	11	82	5	54	0	2	20	77	0.87
16776096--16776175	24	3.3	23	88	8	115	16	5	46	32	1.68
16778044--16778096	26	2.0	26	100	0	106	26	16	26	30	1.97
16778928--16778980	26	2.0	26	96	0	97	26	22	24	26	2.00
16776314--16784803	889	9.6	889	79	6	8541	25	23	24	26	2.00
16779817--16779869	26	2.0	26	92	0	88	28	18	24	28	1.98
16780701--16780753	26	2.0	26	100	0	106	26	20	26	26	1.99
16781590--16781640	26	2.0	26	96	0	93	29	19	23	27	1.98
16783099--16783151	26	2.0	26	88	0	79	30	18	22	28	1.98
16783378--16783430	26	2.0	26	100	0	106	26	20	26	26	1.99
16782990--16783500	279	1.8	279	88	2	776	25	27	27	19	1.99
16784271--16784323	26	2.0	26	96	0	97	32	20	22	24	1.98
16785666--16785718	26	2.0	26	92	0	88	28	18	24	28	1.98
16786548--16786600	26	2.0	26	96	0	97	28	18	26	26	1.98
16786732--16787464	370	2.0	369	85	2	999	25	17	23	33	1.96
16787808--16787860	26	2.0	26	96	0	97	28	20	24	26	1.99
16788693--16788745	26	2.0	26	92	0	88	30	22	20	26	1.98
16789584--16789637	26	2.1	26	92	0	90	31	20	24	24	1.98
16790473--16790525	26	2.0	26	92	0	88	28	18	24	28	1.98
16787099--16795125	889	9.1	887	84	4	10131	25	23	24	26	2.00
16792220--16792272	26	2.0	26	92	0	88	26	18	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16793935--16793987	26	2.0	26	96	0	97	28	20	24	26	1.99
16795627--16795677	26	2.0	26	96	0	93	29	15	25	29	1.96
16795720--16796069	167	2.1	167	83	2	434	21	30	30	16	1.96
16796684--16796736	26	2.0	26	88	0	79	28	18	22	30	1.98
16797489--16797541	26	2.0	26	96	0	97	28	20	24	26	1.99
16798381--16798433	26	2.0	26	92	0	88	30	20	22	26	1.98
16799272--16799324	26	2.0	26	88	0	79	26	22	24	26	2.00
16796981--16803039	889	6.8	889	87	2	8204	25	24	24	25	2.00
16800161--16800213	26	2.0	26	92	0	88	26	16	26	30	1.97
16801050--16801102	26	2.0	26	85	0	70	24	18	24	32	1.97
16802802--16802854	26	2.0	26	88	0	79	28	20	22	28	1.99
16803054--16807154	863	4.7	880	85	4	4888	25	24	24	25	2.00
16807517--16807569	26	2.0	26	92	0	88	26	22	24	26	2.00
16808405--16808455	26	2.0	26	92	0	84	27	15	25	31	1.96
16807149--16810136	888	3.4	883	84	6	3817	25	24	24	25	2.00
16810887--16810939	26	2.0	26	88	0	79	28	16	24	30	1.97
16811312--16811387	35	2.2	35	90	4	118	22	7	17	52	1.70
16812681--16812733	26	2.0	26	96	0	97	28	20	24	26	1.99
16810136--16817087	880	7.9	878	85	4	8604	25	23	24	26	2.00
16815291--16815342	26	2.0	26	92	0	86	26	19	26	26	1.99
16816172--16816229	26	2.2	27	93	3	100	27	20	24	27	1.99
16818065--16818127	16	3.9	16	73	8	56	19	6	30	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16818074--16818138	33	2.0	33	84	6	87	16	4	30	47	1.67
16818636--16818708	38	1.9	38	82	0	92	12	23	39	24	1.89
16819293--16819339	18	2.6	18	93	0	76	0	2	14	82	0.75
16819505--16819584	12	6.7	12	70	5	63	16	5	46	32	1.68
16819505--16819590	24	3.6	23	85	7	109	16	5	45	32	1.71
16819631--16819675	12	3.7	12	82	5	63	2	0	11	86	0.65
16819850--16820378	49	10.9	49	86	6	656	36	26	11	25	1.90
16831003--16831065	16	3.9	16	73	8	56	19	4	30	46	1.70
16831012--16831076	33	2.0	33	84	6	87	16	3	30	49	1.61
16831586--16831639	26	2.1	26	89	0	81	12	27	35	24	1.92
16832364--16832419	12	4.7	12	71	8	51	19	5	42	32	1.74
16832364--16832419	24	2.3	23	76	8	58	19	5	42	32	1.74
16833426--16833478	26	2.0	26	96	0	97	28	20	26	24	1.99
16834315--16834365	26	2.0	26	96	0	93	27	13	27	31	1.94
16832555--16836987	885	5.0	885	87	2	6201	25	24	24	25	2.00
16835199--16835251	26	2.0	26	92	0	88	28	18	24	28	1.98
16836086--16836138	26	2.0	26	88	0	79	24	22	26	26	2.00
16837491--16837543	26	2.0	26	88	0	79	28	16	24	30	1.97
16838358--16838410	26	2.0	26	96	0	97	28	20	24	26	1.99
16836993--16843697	864	7.6	862	79	8	6738	25	23	24	26	2.00
16841834--16841912	26	3.0	26	100	0	158	26	20	26	26	1.99
16842791--16842843	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16843672--16843847	26	6.8	26	91	0	289	28	18	25	27	1.98
16843672--16843847	52	3.4	52	97	0	325	28	18	25	27	1.98
16845510--16845772	142	1.9	141	80	10	313	20	25	35	17	1.95
16846892--16846955	24	2.7	24	97	0	119	18	15	37	28	1.92
16848719--16848771	26	2.0	26	96	0	97	28	26	18	26	1.98
16851902--16851954	26	2.0	26	96	0	97	26	24	20	28	1.99
16850096--16864138	889	15.9	888	86	4	18368	25	24	24	25	2.00
16853655--16853707	26	2.0	26	100	0	106	26	26	20	26	1.99
16854551--16854600	26	1.9	26	87	0	73	22	24	18	36	1.95
16856023--16856074	22	2.4	22	96	0	95	42	13	28	15	1.85
16857214--16857266	26	2.0	26	96	0	97	28	24	20	26	1.99
16858968--16859020	26	2.0	26	92	0	88	28	24	20	26	1.99
16859865--16859917	26	2.0	26	100	0	106	26	26	20	26	1.99
16860754--16860806	26	2.0	26	100	0	106	26	26	20	26	1.99
16861634--16861686	26	2.0	26	96	0	97	24	22	20	32	1.98
16862499--16862551	26	2.0	26	92	0	88	24	24	22	28	2.00
16863380--16863430	26	2.0	26	100	0	102	27	25	19	27	1.99
16863404--16864871	699	2.1	703	90	2	2302	26	23	24	25	2.00
16864975--16865027	26	2.0	26	96	0	97	26	24	20	28	1.99
16867434--16867486	26	2.0	26	92	0	88	28	24	18	28	1.98
16865991--16869051	879	3.5	877	86	4	4107	26	24	22	25	2.00
16869136--16869169	16	2.1	16	89	10	52	26	0	2	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16869248--16869280	11	2.8	12	90	9	59	33	6	0	60	1.21
16869241--16869280	17	2.4	17	86	0	53	32	5	2	60	1.32
16869696--16869752	26	2.2	27	84	6	73	35	5	17	42	1.72
16869767--16869827	31	2.0	31	83	0	77	27	22	21	27	1.99
16870136--16870189	23	2.3	23	83	3	63	11	3	5	79	1.02
16870216--16870307	35	2.8	33	80	14	93	14	9	2	73	1.17
16870317--16870779	177	2.6	178	89	5	673	46	7	13	32	1.72
16870317--16870779	57	7.7	59	85	6	591	46	7	13	32	1.72
16876065--16876114	26	1.9	26	91	0	82	22	28	20	30	1.98
16877817--16877869	26	2.0	26	89	7	81	30	24	16	28	1.97
16876953--16878733	890	2.0	890	87	2	2599	25	24	24	25	2.00
16878529--16878892	159	2.3	159	86	0	505	19	28	28	23	1.98
16878683--16881555	892	3.2	886	87	3	3974	25	24	24	24	2.00
16880641--16880693	26	2.0	26	92	0	88	26	22	20	30	1.98
16881359--16881873	159	3.2	159	89	1	746	19	29	29	21	1.98
16883626--16883676	26	2.0	26	100	0	102	25	27	19	27	1.99
16884505--16884557	26	2.0	26	96	0	97	26	28	18	26	1.98
16881656--16886317	888	5.3	888	87	1	6514	25	24	24	25	2.00
16885394--16885446	26	2.0	26	96	0	97	26	24	20	28	1.99
16886388--16886433	4	11.8	4	83	4	58	84	15	0	0	0.62
16886387--16886434	19	2.5	19	89	3	78	85	14	0	0	0.60
16886480--16886559	12	6.7	12	72	5	63	32	46	5	16	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16886474--16886559	24	3.5	24	87	1	118	32	45	5	16	1.71
16886722--16886752	13	2.4	13	100	0	62	83	16	0	0	0.64
16887342--16887431	38	2.4	38	82	0	108	23	37	25	13	1.91
16887928--16887989	16	3.9	15	77	8	61	45	30	4	19	1.71
16888356--16888388	17	2.1	16	88	11	50	78	3	0	18	0.87
16889049--16889094	21	2.2	21	84	3	58	28	2	2	67	1.14
16900060--16900495	49	8.9	49	84	5	562	26	11	25	36	1.91
16900670--16900701	12	2.7	12	100	0	64	84	15	0	0	0.63
16902537--16902586	26	1.9	26	91	0	82	28	20	16	36	1.93
16900808--16904904	861	4.7	863	88	4	5620	25	24	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160