genome.fa.s334.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  39  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9213313--9213342	14	2.1	14	93	0	51	36	0	3	60	1.14
9213340--9213385	24	2.0	23	86	4	65	45	2	4	47	1.34
9213492--9213535	20	2.2	20	88	8	63	59	11	2	27	1.44
9217116--9217140	11	2.3	11	100	0	50	24	0	0	76	0.80
9217927--9217974	18	2.5	20	80	10	64	54	0	0	45	0.99
9219706--9219807	22	4.7	21	72	9	71	33	29	13	23	1.93
9219692--9219807	44	2.7	44	74	2	119	32	26	14	25	1.95
9219822--9219917	43	2.2	44	79	7	106	34	22	11	31	1.90
9220240--9220350	22	5.0	22	68	8	64	34	19	12	33	1.90
9220380--9220431	22	2.4	22	90	0	77	36	28	13	21	1.91
9220475--9220578	38	2.8	38	80	4	113	25	13	22	39	1.90
9221436--9221470	17	2.1	17	89	10	54	31	5	5	57	1.46
9221542--9221798	24	10.7	24	72	15	192	33	4	9	52	1.54
9221614--9221692	21	3.8	22	80	8	69	39	2	5	53	1.37
9221635--9221671	12	3.0	12	84	7	56	37	0	2	59	1.12
9221635--9221843	47	4.3	48	78	12	167	33	2	7	55	1.43
9221635--9221799	71	2.4	69	88	5	242	33	2	8	55	1.43
9221738--9221854	56	2.1	56	93	0	198	30	3	10	55	1.50
9221768--9221830	32	2.0	32	84	6	83	28	4	9	57	1.51
9221836--9221888	18	2.9	18	81	10	63	28	3	15	52	1.59
9221942--9221992	17	3.0	17	71	18	52	23	3	19	52	1.62
9221926--9222046	35	3.4	35	82	3	145	27	4	14	52	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9222011--9222069	22	2.6	22	84	7	66	28	5	13	52	1.61
9221976--9222110	57	2.3	58	79	13	154	27	7	13	51	1.67
9224930--9225051	8	16.1	8	72	7	69	22	0	30	45	1.58
9224952--9225051	15	6.8	14	72	14	67	23	1	32	44	1.60
9224971--9225051	7	11.0	7	74	10	72	22	1	33	43	1.61
9224970--9225048	22	3.5	22	84	1	95	22	1	30	45	1.60
9227751--9227802	13	4.1	12	78	9	50	7	5	3	82	0.93
9228407--9228455	20	2.5	19	90	6	71	14	6	0	79	0.91
9228673--9228717	7	6.3	7	82	14	56	68	0	4	26	1.08
9229043--9229076	2	17.0	2	87	0	50	50	2	2	44	1.32
9229445--9229507	28	2.3	27	89	5	92	44	0	4	50	1.23
9229603--9229661	29	2.0	29	83	0	73	49	5	0	45	1.24
9233126--9233178	24	2.3	23	83	12	72	45	0	5	49	1.26
9233417--9233475	26	2.4	23	81	13	66	45	3	1	49	1.28
9233513--9233568	21	2.7	21	91	2	87	57	5	0	37	1.22
9233578--9233673	47	2.0	50	83	8	126	47	3	1	47	1.24
9233706--9233762	24	2.4	22	86	13	78	42	3	1	52	1.28
9233850--9233895	21	2.2	22	84	7	60	54	8	2	34	1.43
9233882--9233928	15	3.2	15	78	21	55	46	0	6	46	1.28
9235574--9235614	2	20.5	2	100	0	82	51	0	0	48	1.00
9235749--9235781	16	2.1	16	88	11	50	69	0	3	27	1.03
9237558--9237590	14	2.4	14	94	0	57	24	6	6	63	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9238347--9238388	20	2.2	18	91	8	66	52	0	0	47	1.00
9239451--9239527	41	1.9	40	86	2	109	32	5	5	57	1.43
9240198--9240237	18	2.4	17	88	12	57	65	0	0	35	0.93
9240490--9240598	41	2.7	41	85	2	148	40	5	6	47	1.52
9253776--9253828	16	3.5	14	84	10	52	54	5	1	37	1.35
9253776--9253843	30	2.3	29	80	12	75	54	7	1	36	1.37
9253788--9253842	14	3.7	15	88	9	78	56	7	0	36	1.27
9258629--9258675	2	23.5	2	100	0	94	48	0	0	51	1.00
9264449--9264548	29	3.7	28	76	17	122	38	16	8	38	1.78
9264479--9264650	11	13.7	11	73	23	128	40	16	7	36	1.77
9264490--9264662	40	4.1	40	81	15	220	38	15	7	38	1.75
9264450--9264559	51	2.2	51	96	0	202	39	16	8	36	1.78
9264450--9264662	91	2.3	91	100	0	426	38	15	7	38	1.76
9264541--9264639	29	3.7	28	76	18	120	38	16	8	37	1.78
9264530--9264650	51	2.4	51	95	0	224	39	16	8	35	1.79
9267907--9267947	20	2.0	21	90	4	66	26	29	24	19	1.98
9268000--9268043	3	14.7	3	82	17	56	31	0	2	65	1.05
9268014--9268133	6	17.1	7	71	22	51	32	1	3	62	1.21
9268057--9268148	4	21.5	4	71	18	53	30	1	3	65	1.16
9268013--9268151	8	17.6	8	69	26	52	32	1	2	63	1.18
9269135--9269187	4	13.8	4	77	15	58	20	0	3	75	0.96
9269253--9269294	22	1.9	22	85	9	59	14	9	2	73	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9269298--9269894	59	9.9	59	79	13	594	46	7	13	33	1.69
9269318--9269896	119	4.8	118	85	8	674	45	7	13	33	1.71
9271642--9271681	20	2.0	21	85	5	55	37	2	7	52	1.43
9280778--9281044	125	2.2	122	81	6	295	37	12	9	40	1.76
9280944--9281381	185	2.4	185	82	3	533	36	12	11	39	1.80
9281216--9281514	125	2.4	124	81	5	345	36	11	12	40	1.78
9281046--9281697	311	2.1	311	80	5	726	36	12	11	39	1.79
9281241--9281560	125	2.6	123	78	8	299	37	11	11	39	1.79
9281342--9281810	188	2.5	187	86	4	608	36	11	11	40	1.78
9285926--9286832	302	3.0	300	80	5	988	37	15	13	34	1.86
9286396--9286722	179	1.9	176	80	8	387	37	15	13	33	1.87
9286572--9286800	126	1.8	126	81	5	284	36	15	15	33	1.89
9286572--9286832	126	2.1	126	79	7	273	35	14	15	34	1.88
9288002--9288026	12	2.1	12	100	0	50	68	0	0	32	0.90
9289735--9289782	24	2.0	24	92	4	80	25	0	12	62	1.30
9289784--9289813	14	2.1	14	100	0	60	33	0	6	60	1.23
9289891--9289932	19	2.2	19	91	0	66	80	2	4	11	0.95
9290757--9290852	3	32.0	3	76	14	58	60	5	0	34	1.19
9290756--9290852	16	6.4	16	70	20	57	60	5	0	34	1.19
9290758--9290848	30	3.5	28	72	25	85	60	5	0	34	1.20
9291080--9291190	39	2.9	40	77	11	124	42	11	24	21	1.86
9291689--9291829	76	1.9	74	83	7	185	34	9	20	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9291900--9292041	76	1.9	75	83	4	187	36	14	16	31	1.90
9292011--9292156	68	2.1	69	87	3	206	37	16	16	29	1.91
9292112--9292218	17	6.2	17	65	10	56	41	17	15	25	1.89
9292080--9292262	86	2.1	86	87	1	260	39	18	16	25	1.92
9291971--9292269	154	1.9	154	84	1	402	39	16	16	27	1.90
9293079--9293234	46	3.1	51	73	18	137	29	14	7	48	1.71
9293060--9293249	99	1.9	99	84	6	251	27	14	6	50	1.68
9293428--9293454	14	1.9	14	100	0	54	14	0	0	85	0.61
9293986--9294010	12	2.1	12	100	0	50	32	20	16	32	1.94
9299363--9299432	30	2.4	29	86	11	99	25	0	12	61	1.32
9300372--9300471	3	33.0	3	75	13	57	62	3	1	34	1.17
9300387--9300411	4	6.2	4	100	0	50	76	0	0	24	0.80
9300382--9300467	8	10.8	8	74	18	65	60	3	1	34	1.21
9300407--9300467	22	2.5	24	79	17	72	55	4	1	37	1.31
9300417--9300464	11	4.3	11	84	12	62	54	6	2	37	1.38
9301061--9301122	21	3.2	21	80	17	64	25	0	11	62	1.28
9301115--9301153	19	2.1	19	85	4	53	25	2	12	58	1.47
9301120--9301159	19	2.2	19	86	4	55	22	5	12	60	1.52
9301303--9301356	24	2.3	23	75	6	54	75	5	1	16	1.07
9302085--9302160	3	26.0	3	77	5	75	57	2	2	36	1.26
9302087--9302140	11	4.7	11	84	6	54	57	1	1	38	1.20
9305394--9305448	21	2.6	21	75	11	58	50	7	5	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9311819--9311869	11	4.6	11	87	0	66	15	9	11	62	1.53
9315199--9315243	19	2.2	22	84	11	60	40	2	13	44	1.56
9316049--9316097	25	2.0	25	88	8	73	24	0	22	53	1.47
9316078--9316130	7	7.9	7	83	8	56	24	0	28	47	1.52
9316052--9316130	20	4.0	20	83	8	81	24	0	26	49	1.51
9316074--9316284	13	16.3	13	69	14	57	22	0	34	42	1.60
9316121--9316171	23	2.2	23	92	0	84	19	0	43	37	1.51
9316100--9316284	7	27.4	7	70	17	90	21	1	35	41	1.61
9316080--9316284	20	10.5	20	72	18	128	22	0	34	42	1.60
9316179--9316241	33	1.9	33	87	6	92	26	1	26	44	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160