genome.fa.s334.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  54  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11502738--11502860	61	2.0	61	98	0	237	39	17	9	33	1.82
11513310--11513360	26	2.0	26	84	0	66	39	13	13	33	1.84
11513419--11513464	23	2.0	23	100	0	92	21	17	26	34	1.95
11514185--11514377	63	3.1	61	79	10	178	32	8	12	46	1.72
11515986--11516025	20	2.1	19	86	13	55	42	7	22	27	1.80
11516235--11516284	12	4.2	12	80	10	57	82	0	8	10	0.86
11516243--11516284	6	7.0	6	86	10	50	83	0	7	9	0.81
11517198--11517596	103	3.9	100	79	7	406	45	9	13	31	1.75
11517899--11518000	40	2.6	39	84	3	125	23	12	17	46	1.83
11517899--11518075	39	4.5	38	81	9	180	24	10	19	45	1.81
11518131--11518167	16	2.4	15	86	8	56	89	2	0	8	0.58
11518131--11518165	9	3.9	9	84	0	52	88	2	0	8	0.61
11518131--11518165	18	1.9	18	94	0	61	88	2	0	8	0.61
11518353--11518425	23	3.1	24	75	11	71	21	0	5	72	1.04
11519048--11519162	61	1.9	59	85	3	158	32	13	5	48	1.65
11519149--11519354	61	3.5	59	78	9	202	34	8	5	51	1.56
11519328--11519360	14	2.2	16	89	10	52	33	0	12	54	1.37
11519426--11519464	19	2.0	20	85	5	53	66	2	5	25	1.25
11520439--11520565	40	3.1	40	80	5	130	46	19	12	21	1.83
11521066--11521451	46	8.5	46	80	8	371	37	13	11	38	1.80
11521125--11521339	25	9.1	25	78	13	195	35	11	12	40	1.79
11521122--11521336	71	3.0	70	77	10	238	34	11	12	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11521345--11521425	25	3.4	24	73	13	87	33	16	11	39	1.83
11521366--11521441	21	3.4	21	74	13	71	38	17	10	34	1.84
11521261--11521423	84	1.9	84	94	0	290	36	15	10	37	1.82
11521215--11521451	130	1.8	130	88	1	368	37	14	10	36	1.82
11522688--11522785	37	2.8	34	78	10	108	5	18	0	76	0.96
11522685--11522772	8	10.2	8	72	23	56	4	15	0	79	0.89
11522708--11522767	27	2.2	28	82	11	72	3	20	0	76	0.92
11522717--11522798	28	3.0	25	80	12	65	3	19	0	76	0.93
11522751--11522833	25	3.2	26	71	15	73	7	19	0	73	1.06
11522766--11522811	24	2.0	23	91	4	74	8	19	0	71	1.11
11522682--11522821	34	3.9	35	75	19	121	6	19	0	74	1.03
11522766--11522813	12	4.1	12	76	12	55	10	18	0	70	1.15
11522774--11522821	23	2.0	24	84	4	62	10	20	0	68	1.18
11522801--11522832	17	1.9	16	93	6	55	9	21	0	68	1.17
11522764--11522835	26	2.8	26	75	12	76	9	20	0	69	1.16
11526837--11527081	133	1.8	133	81	3	305	37	8	6	47	1.60
11526973--11527144	61	2.8	60	77	2	191	41	8	6	43	1.61
11528089--11528120	15	2.1	15	94	0	55	25	0	0	75	0.81
11528139--11528177	20	2.0	20	90	10	62	69	10	5	15	1.34
11528171--11528221	19	2.7	18	78	9	57	76	1	3	17	1.03
11529617--11529660	19	2.3	19	76	0	52	25	4	2	68	1.20
11529650--11529728	20	3.7	20	71	15	77	30	2	10	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11533149--11533210	29	2.1	29	93	0	106	38	1	4	54	1.31
11533158--11533219	29	2.1	29	90	0	97	41	0	4	53	1.22
11533158--11533236	29	2.7	29	86	0	86	43	0	5	51	1.23
11533857--11533886	2	15.0	2	92	0	51	53	0	0	46	1.00
11534077--11534129	18	2.8	19	80	5	63	60	0	0	39	0.97
11534109--11534145	18	1.9	19	89	10	58	54	0	0	45	1.00
11534076--11534145	19	3.7	20	77	9	58	55	0	0	44	0.99
11534107--11534152	18	2.4	18	82	10	56	54	0	0	45	0.99
11534252--11534282	2	15.5	2	100	0	62	51	0	0	48	1.00
11534696--11534765	22	3.3	22	92	4	117	52	0	0	47	1.00
11535754--11535818	29	2.3	29	89	7	98	36	0	16	46	1.48
11536436--11536477	16	2.7	16	79	17	52	30	0	0	69	0.89
11536996--11537261	135	2.0	131	95	4	480	45	14	11	28	1.79
11542569--11542629	30	2.0	30	100	0	122	47	3	16	32	1.63
11545483--11545512	2	15.0	2	92	0	51	46	0	0	53	1.00
11553653--11553699	2	23.5	2	95	0	85	51	0	2	46	1.13
11554048--11554076	5	5.8	5	100	0	58	58	0	0	41	0.98
11555330--11555401	21	3.4	21	75	17	69	70	1	6	20	1.18
11555378--11555413	16	2.2	16	90	0	54	75	2	2	19	1.06
11562001--11562046	17	2.7	17	78	18	51	39	4	28	28	1.76
11563520--11563575	28	2.1	29	78	18	68	55	0	12	32	1.37
11563581--11563636	25	2.3	25	78	12	62	71	5	7	16	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11564393--11564435	23	1.9	23	85	4	61	67	0	11	20	1.22
11572250--11572411	73	2.2	73	79	4	171	37	9	4	47	1.58
11583554--11583619	34	1.9	34	96	0	123	34	16	6	42	1.73
11583557--11583629	34	2.1	34	87	0	101	38	15	5	41	1.70
11592080--11592114	18	1.9	19	88	11	56	20	2	17	60	1.49
11597157--11597198	21	2.0	22	85	4	59	66	2	11	19	1.34
11597770--11597820	19	2.7	19	75	0	57	39	13	15	31	1.87
11598032--11598070	21	1.9	20	84	5	51	69	7	0	23	1.14
11598039--11598068	15	1.9	16	93	6	53	73	6	0	20	1.05
11602842--11602867	13	2.0	13	100	0	52	76	0	23	0	0.78
11604147--11604209	26	2.5	24	80	14	72	76	0	15	7	1.01
11604156--11604208	26	1.9	26	88	11	79	75	0	16	7	1.02
11604144--11604251	47	2.3	47	81	12	132	75	0	18	5	1.06
11604154--11604195	19	2.2	20	82	4	50	76	0	16	7	1.00
11605137--11605220	29	2.9	28	74	10	80	27	25	16	30	1.97
11605523--11605697	96	1.8	96	80	7	212	36	17	14	32	1.89
11605554--11605725	33	5.3	31	74	13	134	37	17	14	30	1.90
11605733--11605798	30	2.2	30	94	0	114	24	18	22	34	1.96
11606324--11606375	16	3.0	17	76	18	54	82	11	1	3	0.88
11607831--11607923	46	2.0	46	100	0	186	52	2	27	17	1.56
11610158--11610472	158	2.0	158	80	4	359	42	18	8	30	1.81
11614332--11614377	20	2.3	20	88	0	74	47	34	6	10	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11614452--11614557	56	1.9	56	90	0	167	42	14	14	29	1.84
11619989--11620038	20	2.5	20	75	15	50	30	10	20	40	1.85
11621315--11621602	143	2.0	143	97	1	542	24	12	10	52	1.71
11623447--11623488	20	2.1	20	86	8	59	47	14	0	38	1.44
11627498--11627539	17	2.4	18	76	11	52	47	11	4	35	1.61
11628673--11628719	25	1.9	25	86	4	69	44	4	2	48	1.34
11628870--11628905	17	2.1	17	89	0	54	33	13	19	33	1.91
11629403--11629463	28	2.1	29	85	8	81	40	0	9	49	1.36
11630979--11631033	12	4.5	12	76	10	58	36	3	0	60	1.15
11632829--11632871	20	2.0	22	86	8	63	32	2	13	51	1.54
11643180--11643227	9	5.4	9	78	14	55	70	0	0	29	0.87
11643282--11643316	2	17.5	2	100	0	70	51	0	0	48	1.00
11650330--11650408	39	2.0	39	85	4	106	36	26	16	20	1.93
11650339--11650426	19	4.6	19	78	5	79	35	22	20	21	1.96
11650378--11650436	19	3.1	19	75	4	57	33	22	20	23	1.97
11650808--11650849	2	21.5	2	85	4	59	45	0	4	50	1.23
11650808--11650853	16	3.0	16	93	6	78	43	0	6	50	1.28
11650882--11650937	13	4.2	14	72	25	50	57	3	1	37	1.27
11652157--11652208	3	17.3	3	100	0	104	67	0	0	32	0.91
11656484--11656589	41	2.6	40	80	1	122	34	18	13	33	1.90
11656471--11656682	40	5.3	40	75	3	147	32	13	13	40	1.84
11656738--11656853	41	2.8	42	78	10	116	41	11	8	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11657110--11657260	46	3.3	48	85	8	188	31	7	11	49	1.67
11657284--11657322	19	2.2	18	90	9	62	89	7	0	2	0.56
11663492--11663544	20	2.6	21	82	5	65	49	20	9	20	1.77
11665806--11665835	7	4.4	7	95	4	53	40	0	30	30	1.57
11666234--11666673	49	9.0	49	75	4	336	32	11	14	41	1.82
11666242--11666670	98	4.4	97	78	5	377	32	11	14	41	1.81
11666234--11666727	98	5.1	98	77	7	305	32	11	14	41	1.82
11669178--11669222	19	2.4	18	81	3	54	37	33	4	24	1.76
11669279--11669329	26	2.0	26	92	0	84	45	33	3	17	1.67
11669215--11669470	7	39.2	6	67	24	71	46	31	2	19	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160