genome.fa.s334.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  93  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17670633--17670796	59	2.8	57	81	12	206	31	10	6	51	1.62
17670628--17670817	58	3.3	56	72	13	152	34	8	6	50	1.59
17670628--17670819	59	3.3	56	75	13	174	34	8	6	50	1.59
17670742--17670909	77	2.2	74	75	14	169	36	6	6	50	1.54
17670961--17670997	16	2.3	16	85	0	56	70	5	2	21	1.20
17671386--17671437	21	2.4	22	84	9	63	59	7	5	26	1.48
17672182--17672218	19	1.9	19	94	0	65	35	24	10	29	1.89
17672368--17672433	21	3.1	21	82	2	87	34	13	10	40	1.79
17672367--17672450	42	1.9	44	88	9	127	33	14	9	42	1.78
17673490--17673562	22	3.1	23	72	23	62	6	16	0	76	0.99
17673915--17673948	9	3.7	9	88	7	50	2	11	0	85	0.71
17673915--17673952	10	3.8	10	89	6	51	2	13	0	84	0.73
17677024--17677306	60	4.7	59	78	8	313	33	12	5	49	1.62
17677025--17677306	119	2.4	119	92	2	458	33	12	5	48	1.63
17677328--17677512	64	2.9	64	82	7	257	32	9	5	51	1.57
17677131--17677612	206	2.4	201	87	6	665	34	9	5	50	1.59
17677650--17677694	23	2.0	23	86	8	65	75	6	0	17	1.01
17678396--17678455	3	19.7	3	74	16	52	70	1	1	26	1.07
17685856--17685908	3	17.0	3	84	7	70	66	1	1	30	1.13
17685837--17685908	12	5.9	12	79	9	65	68	1	4	26	1.16
17686001--17686057	27	2.1	27	86	0	78	47	24	8	19	1.77
17686027--17686075	20	2.5	20	86	0	62	53	24	2	20	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17701634--17701677	21	2.1	21	91	0	70	2	20	9	68	1.28
17708059--17708105	16	2.9	16	78	15	51	44	0	2	53	1.12
17708080--17708131	13	4.2	13	75	9	54	48	0	0	51	1.00
17712201--17712263	26	2.5	26	82	7	78	33	6	7	52	1.56
17712526--17712692	10	16.5	10	70	15	78	63	7	0	28	1.25
17712526--17712664	52	2.7	53	82	9	155	64	5	0	28	1.21
17712637--17712686	21	2.4	21	79	0	55	54	10	0	36	1.34
17712583--17712715	31	4.3	30	69	14	83	57	9	1	32	1.39
17712762--17712822	18	3.6	17	79	18	65	32	0	3	63	1.10
17712762--17712804	16	2.6	18	89	10	65	37	0	0	62	0.95
17712762--17712849	18	5.1	17	72	14	54	30	0	3	65	1.09
17712987--17713027	17	2.3	19	83	8	50	41	2	2	53	1.27
17713081--17713128	10	4.7	10	76	5	51	33	0	6	60	1.22
17713081--17713125	20	2.2	21	88	4	65	35	0	6	57	1.25
17713076--17713137	30	2.1	29	87	3	88	32	0	8	59	1.26
17713085--17713242	9	16.6	9	67	16	59	39	0	6	53	1.26
17713172--17713229	28	2.1	28	83	0	71	37	0	6	55	1.27
17713179--17713242	19	3.3	19	82	8	76	39	0	3	57	1.14
17713192--17713243	20	2.7	19	85	5	70	34	0	3	61	1.14
17713193--17713250	20	3.0	20	76	14	59	37	0	5	56	1.21
17713297--17713343	10	4.6	10	82	12	60	23	2	8	65	1.31
17713297--17713344	21	2.3	21	85	7	62	22	2	8	66	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17713349--17713432	10	8.4	10	72	9	55	36	1	4	57	1.28
17713480--17713508	2	14.5	2	100	0	58	48	0	0	51	1.00
17714088--17714156	23	3.1	22	80	12	70	4	17	1	76	1.02
17714116--17714169	22	2.4	23	79	14	60	5	22	0	72	1.05
17714115--17714166	23	2.3	23	83	12	63	5	21	0	73	1.04
17714830--17714872	18	2.4	18	80	3	52	62	13	13	9	1.53
17715650--17715707	22	2.6	22	77	0	62	34	6	13	44	1.71
17715845--17715896	22	2.3	22	86	3	68	38	5	7	48	1.56
17715941--17716039	22	4.5	22	81	0	99	38	5	13	43	1.65
17720999--17721067	32	2.2	32	86	0	93	46	15	4	33	1.66
17721009--17721072	32	2.0	32	93	0	110	43	15	3	37	1.63
17721074--17721166	17	5.9	17	66	25	53	51	0	3	45	1.17
17721058--17721170	46	2.3	49	86	5	160	49	0	2	47	1.15
17721070--17721142	29	2.5	30	80	8	71	50	0	2	46	1.15
17721209--17721274	2	34.0	2	78	6	64	54	3	0	42	1.15
17721151--17721264	34	3.4	33	76	12	97	56	0	0	42	1.05
17728628--17728675	16	2.8	17	84	6	62	50	0	0	50	1.00
17728768--17728819	14	3.2	17	71	18	56	50	0	3	46	1.20
17728761--17728834	31	2.4	31	85	14	109	54	0	2	43	1.14
17729019--17729120	40	2.4	42	74	14	102	46	0	1	50	1.19
17730007--17730051	23	1.9	24	86	4	65	35	8	0	55	1.31
17730608--17730742	72	1.9	72	88	0	207	26	14	6	52	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17731713--17731766	24	2.2	25	78	18	60	25	5	1	66	1.23
17732873--17732920	21	2.2	23	88	7	73	66	14	0	18	1.25
17732881--17732938	21	2.8	22	82	12	61	62	13	0	24	1.32
17736038--17736068	16	1.9	16	93	0	53	67	0	16	16	1.23
17737263--17737324	3	20.7	3	100	0	124	33	0	0	66	0.92
17738660--17739055	145	2.7	143	80	4	456	41	11	14	32	1.81
17739870--17740228	129	2.8	127	82	5	400	36	13	14	35	1.85
17740079--17740135	22	2.6	22	80	5	71	33	12	22	31	1.91
17740134--17740435	98	3.0	98	80	9	356	36	13	14	36	1.85
17740839--17740872	12	2.8	12	90	0	50	41	11	20	26	1.87
17741044--17741128	41	2.1	41	84	4	109	31	12	23	31	1.92
17741175--17741318	38	3.8	36	76	14	128	32	9	18	39	1.83
17741199--17741318	38	3.1	37	79	13	134	30	10	17	41	1.82
17741333--17741433	52	1.9	54	83	4	134	33	10	21	33	1.88
17741817--17742171	34	10.6	34	75	10	237	34	13	18	33	1.90
17741817--17742171	67	5.3	68	75	9	273	34	13	18	33	1.90
17741789--17742080	101	2.9	100	81	2	334	33	13	18	35	1.89
17741822--17742111	101	2.9	99	78	7	314	34	12	18	34	1.89
17741822--17742171	101	3.5	98	75	13	261	34	13	18	33	1.90
17742719--17742747	8	3.8	8	95	4	51	13	0	0	86	0.58
17747263--17747293	16	1.9	16	93	0	53	45	9	12	32	1.75
17748077--17748174	32	3.1	32	96	0	178	15	29	6	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17748721--17749098	145	2.6	145	86	1	508	41	11	15	32	1.82
17749839--17749880	16	2.8	15	89	7	59	57	21	0	21	1.41
17749854--17749909	22	2.6	21	78	18	62	57	23	0	19	1.41
17749855--17749916	15	4.2	15	79	8	65	56	27	0	16	1.40
17749855--17749910	14	3.9	14	79	11	60	57	25	0	17	1.41
17751577--17751618	4	10.5	4	84	0	57	21	4	2	71	1.16
17756403--17756655	127	2.0	127	90	0	398	43	18	15	22	1.88
17762321--17762366	3	15.7	3	95	4	85	30	0	0	69	0.89
17762655--17762884	69	3.4	68	79	3	203	21	19	10	48	1.79
17762724--17762989	34	7.7	34	69	6	133	21	22	11	43	1.85
17762856--17762957	35	3.0	35	77	8	102	24	26	6	42	1.80
17762837--17763012	69	2.5	69	75	2	174	21	23	10	44	1.83
17763032--17763122	34	2.7	35	84	8	116	20	24	7	47	1.76
17763069--17763187	34	3.6	33	73	20	90	21	21	9	47	1.78
17763158--17763229	35	2.1	35	82	7	85	16	16	15	51	1.77
17763169--17763255	35	2.5	33	80	10	102	19	17	13	49	1.79
17764965--17764998	16	2.1	16	88	0	50	70	0	2	26	1.01
17765135--17765180	18	2.6	17	80	16	58	71	2	4	21	1.14
17765335--17765408	15	4.9	15	70	18	64	48	33	0	17	1.48
17765485--17765535	16	3.3	16	86	5	70	52	25	0	21	1.47
17765510--17765564	22	2.5	22	85	2	76	58	20	0	21	1.40
17765510--17765565	14	3.9	14	79	11	60	57	21	0	21	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17767553--17767589	2	18.5	2	100	0	74	51	0	0	48	1.00
17768489--17768532	3	14.7	3	95	0	79	65	0	2	31	1.05
17773487--17773542	18	3.2	17	76	19	53	23	1	1	73	1.03
17773491--17773544	28	1.9	28	85	7	74	25	1	1	70	1.07
17775256--17775290	18	1.9	18	88	11	54	37	2	0	60	1.12
17775509--17775715	67	3.1	66	64	11	177	24	9	4	61	1.45
17775468--17775740	135	2.0	135	100	0	546	23	9	5	61	1.46
17775473--17775792	135	2.4	133	89	6	378	26	8	5	60	1.46
17776076--17776116	15	2.7	16	77	11	50	4	2	12	80	0.97
17777543--17777835	42	7.0	42	75	12	248	43	15	15	25	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160