genome.fa.s334.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  16  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4763741--4763790	2	25.0	2	83	0	64	42	0	6	52	1.26
4764309--4764379	25	2.8	25	78	0	79	29	8	38	23	1.85
4764620--4764681	11	5.6	11	86	0	88	19	0	30	50	1.48
4764619--4764681	22	2.9	22	97	0	117	20	0	30	49	1.49
4764708--4764853	52	2.8	52	86	4	188	40	8	24	26	1.84
4770999--4771031	3	11.0	3	93	0	57	0	36	0	63	0.95
4770993--4771031	12	3.2	12	92	0	60	2	35	0	61	1.10
4775881--4775913	17	1.9	17	93	0	57	66	0	0	33	0.92
4778619--4778749	30	4.4	30	79	2	131	51	1	3	43	1.29
4778621--4778749	58	2.2	60	80	5	147	51	1	3	44	1.26
4780232--4780270	20	2.0	20	84	0	51	43	0	5	51	1.24
4785080--4785113	3	11.3	3	100	0	68	67	0	0	32	0.91
4786990--4787028	15	2.4	17	79	12	55	48	2	0	48	1.15
4789359--4789417	17	3.8	16	73	13	52	33	1	1	62	1.15
4789471--4789520	20	2.3	22	86	10	68	70	6	0	24	1.10
4801533--4801812	47	5.8	47	77	11	246	28	11	20	40	1.86
4801526--4801812	97	2.9	96	83	7	373	28	10	20	39	1.86
4801767--4801845	33	2.4	33	85	4	106	30	10	20	39	1.85
4801693--4801933	130	1.9	129	80	10	285	29	12	19	39	1.87
4801719--4801869	80	1.9	82	83	8	202	31	9	19	40	1.83
4801801--4801934	50	2.8	48	74	14	132	30	11	19	38	1.87
4802025--4802131	50	2.2	48	88	3	151	28	14	21	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4801940--4802150	48	4.5	48	75	12	184	29	13	18	38	1.89
4802110--4802250	44	3.3	43	80	7	135	34	14	13	37	1.85
4802412--4802461	8	6.2	8	88	9	75	2	10	0	88	0.61
4802419--4802462	22	2.0	22	91	8	72	0	13	0	86	0.57
4803489--4803538	20	2.3	22	86	10	68	70	6	0	24	1.10
4807391--4807445	5	11.8	5	98	1	82	43	12	0	43	1.42
4807390--4807461	15	5.2	14	85	12	80	43	13	0	43	1.44
4807390--4807447	12	5.1	10	77	22	53	43	12	0	44	1.41
4817537--4817578	22	1.9	22	90	0	66	47	0	0	52	1.00
4817539--4817610	35	2.1	35	82	10	85	50	0	0	50	1.00
4823774--4823807	2	17.0	2	100	0	68	0	50	0	50	1.00
4826159--4826196	15	2.5	15	87	8	51	28	26	10	34	1.90
4828708--4828756	6	8.2	6	86	0	53	0	14	51	34	1.43
4828946--4828979	14	2.4	14	90	0	50	82	2	2	11	0.89
4829925--4829981	20	2.8	21	75	5	62	56	19	7	17	1.64
4834135--4834193	29	2.0	29	90	0	91	47	10	11	30	1.73
4834140--4834200	29	2.1	29	87	0	86	44	11	14	29	1.81
4838779--4838832	21	2.6	21	82	8	58	46	7	1	44	1.42
4839806--4839866	27	2.3	26	83	13	72	50	1	9	37	1.45
4840510--4840884	206	1.8	208	79	8	442	38	12	6	42	1.69
4841905--4841999	29	3.3	28	82	11	95	29	8	42	20	1.81
4841924--4842012	29	3.1	28	85	6	115	26	8	44	19	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4842084--4842130	24	2.0	24	84	16	62	34	2	2	61	1.20
4842359--4842721	49	7.4	49	75	12	291	39	18	11	30	1.86
4842403--4842721	100	3.3	98	79	9	343	38	19	11	30	1.87
4842773--4843188	146	2.8	146	80	7	464	43	20	11	24	1.84
4843021--4843212	105	1.8	105	83	4	253	45	19	11	23	1.83
4843021--4843243	105	2.1	104	79	9	231	44	20	11	22	1.84
4843264--4843431	90	1.9	90	85	5	232	41	18	12	27	1.86
4843345--4843437	48	1.9	49	82	10	120	41	18	12	26	1.86
4843490--4843584	48	2.0	49	81	6	113	45	20	10	24	1.82
4843505--4843787	105	2.8	105	82	7	325	44	19	12	23	1.85
4843715--4843956	42	5.6	42	72	10	139	45	18	10	25	1.81
4842866--4843917	488	2.2	485	83	5	1318	43	19	11	25	1.85
4844373--4844422	24	2.1	24	88	0	73	36	18	10	36	1.84
4844492--4844544	21	2.5	21	93	0	88	43	15	20	20	1.88
4850214--4850248	10	3.4	10	88	4	52	31	0	0	68	0.90
4850878--4850944	30	2.2	30	76	5	73	16	20	32	29	1.95
4851656--4851761	30	3.6	29	81	11	126	31	9	40	18	1.83
4851837--4851890	21	2.6	21	82	14	67	37	1	1	59	1.19
4851837--4851888	24	2.2	24	86	13	72	36	1	1	59	1.19
4852577--4852620	20	2.2	20	84	8	54	47	0	0	52	1.00
4852601--4852698	28	3.7	25	71	18	74	54	0	2	43	1.12
4852816--4852848	6	5.7	6	85	7	50	69	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4852816--4852870	17	3.0	17	86	10	65	69	0	1	29	0.99
4861324--4861375	25	2.0	25	85	11	68	63	7	15	13	1.51
4862182--4862209	11	2.5	11	100	0	56	67	0	14	17	1.22
4864433--4864480	3	15.7	3	95	4	87	64	0	0	35	0.94
4864776--4864828	24	2.3	23	84	12	72	28	3	0	67	1.07
4864779--4864829	23	2.3	21	80	6	57	31	3	0	64	1.11
4865130--4865177	3	16.0	3	100	0	96	33	0	0	66	0.92
4866529--4866567	16	2.4	16	100	0	78	28	43	12	15	1.83
4869200--4869230	4	8.0	4	92	7	55	0	0	22	77	0.77
4872942--4872980	14	2.8	14	81	14	53	12	0	2	84	0.72
4872936--4872972	19	1.9	19	94	0	65	10	2	0	86	0.67
4873202--4873251	3	16.7	3	100	0	100	68	0	0	32	0.90
4882955--4883071	4	29.2	4	71	19	59	18	2	5	72	1.17
4882948--4883073	26	4.8	25	68	23	73	18	3	6	72	1.20
4883040--4883069	14	2.2	13	94	5	51	20	0	0	80	0.72
4883449--4883485	19	1.9	19	89	10	58	24	10	10	54	1.67
4887744--4888395	204	3.2	204	83	3	751	31	15	14	38	1.87
4888171--4888277	36	3.0	36	73	10	94	29	17	16	35	1.93
4888438--4888649	40	5.3	40	80	8	216	31	14	13	41	1.84
4888438--4888649	80	2.6	81	82	2	259	31	14	13	41	1.84
4888587--4888677	41	2.2	40	84	3	110	24	15	18	41	1.89
4888674--4888809	42	3.2	41	82	5	139	33	19	12	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4889803--4889855	17	3.2	16	79	10	54	18	0	7	73	1.06
4889920--4889959	19	2.1	19	86	9	55	80	7	2	10	1.00
4890169--4890213	3	15.3	3	90	4	74	71	0	0	28	0.87
4890870--4890901	3	10.7	3	100	0	64	68	0	0	31	0.90
4891030--4891179	5	30.2	5	75	15	116	36	5	2	55	1.37
4891030--4891122	13	6.9	13	76	19	75	36	3	3	56	1.31
4891032--4891117	8	10.2	8	73	18	68	36	2	3	58	1.28
4891993--4892047	5	10.6	5	81	18	60	18	1	1	78	0.94
4891994--4892047	20	2.5	22	79	5	67	18	1	1	77	0.95
4892180--4892636	155	2.9	155	90	0	736	47	10	4	37	1.60
4896853--4896884	17	1.9	16	93	6	55	84	0	9	6	0.78
4897999--4898146	55	2.7	54	76	7	154	23	26	10	39	1.86
4898109--4898382	119	2.3	120	82	3	318	21	22	12	44	1.85
4898942--4898974	16	2.1	16	94	0	57	30	6	3	60	1.36
4898982--4899131	5	30.2	5	72	10	87	36	6	4	53	1.46
4898987--4899048	18	3.5	18	80	4	72	35	1	4	58	1.29
4898986--4899051	35	1.9	33	87	6	96	37	1	4	56	1.29
4898981--4899131	58	2.6	54	78	8	149	35	6	3	53	1.46
4899491--4899539	20	2.4	21	82	6	64	24	4	20	51	1.65
4899699--4899803	50	2.1	52	80	5	117	21	17	17	43	1.87
4900025--4900053	13	2.3	13	94	5	51	17	6	0	75	1.01
4900018--4900056	18	2.2	17	86	13	53	15	7	0	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4900526--4900564	15	2.5	16	83	4	53	56	10	0	33	1.33
4900218--4900667	146	3.0	151	86	4	594	46	10	5	38	1.59
4900218--4900677	149	3.1	147	84	6	567	47	9	5	37	1.59
4902753--4902781	5	5.8	5	100	0	58	20	0	0	79	0.74
4903662--4903699	15	2.8	13	82	17	51	39	0	0	60	0.97
4905110--4905141	2	16.0	2	93	0	55	53	0	0	46	1.00
4905106--4905138	10	3.3	10	95	0	57	57	0	0	42	0.98
4907601--4907634	12	2.6	13	86	13	52	0	26	0	73	0.83
4909202--4909936	366	2.0	367	96	2	1356	41	16	12	29	1.84
4911570--4911605	18	1.9	19	88	5	56	52	2	0	44	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160