genome.fa.s334.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  149  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29010358--29010499	75	1.9	75	83	11	184	39	13	9	38	1.76
29010430--29010788	187	1.9	186	82	6	449	41	11	11	35	1.78
29010589--29011086	239	2.1	238	83	1	622	40	11	11	36	1.77
29013418--29013674	139	1.8	140	83	2	338	33	8	13	45	1.73
29015830--29015862	15	2.2	15	94	0	57	39	3	0	57	1.14
29015830--29015891	10	5.8	10	88	5	70	41	1	0	56	1.09
29015842--29015890	2	26.5	2	82	15	61	42	0	0	57	0.99
29016134--29016176	22	1.9	22	85	4	59	53	0	0	46	1.00
29016141--29016200	28	2.1	28	84	6	77	51	0	0	48	1.00
29017429--29017519	45	2.0	45	95	0	164	50	4	0	45	1.21
29018924--29018999	27	2.8	28	79	16	72	40	0	0	59	0.98
29019994--29020021	13	2.2	13	100	0	56	28	39	0	32	1.57
29020196--29020242	19	2.5	19	100	0	94	65	10	0	23	1.23
29022268--29022307	16	2.5	16	87	0	62	37	2	20	40	1.66
29048743--29048794	27	1.9	27	84	7	70	67	1	0	30	1.02
29051569--29051604	14	2.7	13	91	4	54	69	0	0	30	0.89
29060176--29060248	35	2.0	37	92	7	123	50	12	15	21	1.76
29064610--29064634	2	12.5	2	100	0	50	52	0	48	0	1.00
29068081--29068112	16	2.0	16	100	0	64	43	6	18	31	1.75
29068294--29068345	16	3.1	17	84	15	56	51	0	0	48	1.00
29071111--29071205	47	2.0	47	91	4	156	16	37	17	27	1.92
29071158--29071927	376	2.1	371	93	1	1308	17	32	23	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29086318--29086342	1	25.0	1	100	0	50	0	0	0	100	0.00
29092934--29092960	2	13.5	2	100	0	54	51	0	0	48	1.00
29092960--29092988	2	14.5	2	100	0	58	51	0	48	0	1.00
29095165--29095190	2	13.0	2	100	0	52	50	0	0	50	1.00
29101969--29102206	119	2.0	119	100	0	476	33	17	15	33	1.91
29103186--29103230	3	15.3	3	93	4	74	28	0	0	71	0.87
29109757--29109796	20	2.0	20	100	0	80	40	5	15	40	1.68
29127170--29127293	53	2.3	53	97	0	230	35	16	19	28	1.94
29130123--29130208	37	2.4	36	88	3	120	47	6	0	45	1.29
29131377--29131426	19	2.7	18	81	6	64	60	0	6	34	1.21
29132931--29132972	21	2.0	21	90	4	66	57	9	4	28	1.51
29132969--29133013	22	2.1	22	83	4	56	62	8	2	26	1.37
29132969--29133027	22	2.8	21	82	5	55	57	8	5	28	1.50
29132931--29133070	10	13.4	11	63	20	50	53	8	3	34	1.49
29133284--29133333	10	5.1	10	74	13	50	52	8	0	40	1.31
29133422--29133508	21	4.2	20	75	5	75	43	6	6	42	1.58
29143587--29143662	30	2.6	30	84	10	88	52	1	5	40	1.32
29145093--29145139	23	2.0	24	84	12	62	31	6	34	27	1.82
29157502--29157723	112	2.0	111	92	1	374	26	16	22	33	1.96
29164137--29164190	17	3.2	16	80	10	72	37	3	16	42	1.66
29183232--29183304	36	2.1	36	94	2	130	32	9	35	21	1.86
29193483--29193555	32	2.3	32	92	0	119	32	28	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29193487--29193596	38	3.1	36	82	10	120	31	29	16	22	1.96
29193640--29193707	32	2.1	32	94	0	118	27	30	17	23	1.97
29193521--29193771	113	2.2	116	90	4	391	27	32	16	23	1.96
29193715--29193901	86	2.2	87	91	0	304	24	33	18	23	1.96
29193838--29193884	23	2.0	23	100	0	94	21	31	21	25	1.98
29194108--29194161	25	2.2	25	93	0	90	38	16	9	35	1.81
29197648--29197685	12	3.2	12	96	3	69	23	7	15	52	1.69
29197826--29197884	3	19.7	3	89	0	82	6	0	25	67	1.15
29197810--29197886	9	8.6	9	86	0	91	12	0	20	66	1.25
29197959--29198017	23	2.5	24	83	5	77	33	8	10	47	1.68
29202531--29202577	3	15.7	3	84	0	58	0	34	6	59	1.23
29202531--29202577	12	3.9	12	88	0	67	0	34	6	59	1.23
29207677--29207796	63	1.9	63	96	0	222	40	11	7	40	1.70
29211446--29211471	2	13.0	2	100	0	52	50	0	0	50	1.00
29211733--29211774	22	1.9	22	90	0	66	40	0	2	57	1.12
29212156--29212199	22	2.0	22	86	8	63	27	4	9	59	1.48
29214148--29214230	42	2.0	42	90	0	130	36	4	31	27	1.78
29219043--29219078	8	4.5	8	85	0	54	2	30	13	52	1.55
29219515--29219640	62	2.0	63	98	1	245	53	6	6	34	1.52
29222669--29222778	30	3.7	30	82	3	125	50	29	1	18	1.57
29222624--29222724	51	2.0	51	84	3	132	49	28	1	19	1.59
29222710--29222768	16	3.8	16	78	13	61	49	30	1	18	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29222748--29222797	23	2.2	23	89	3	75	52	20	2	26	1.57
29222851--29222910	21	2.8	21	78	12	68	55	26	0	18	1.43
29222930--29222976	21	2.2	22	77	11	53	53	36	0	10	1.36
29222699--29222967	14	18.7	14	66	20	94	52	28	0	18	1.51
29222938--29223017	21	3.8	20	79	12	74	51	30	1	17	1.53
29222800--29222974	27	6.2	28	77	15	173	51	30	0	17	1.46
29222804--29223050	107	2.2	109	84	7	329	49	30	0	18	1.53
29234879--29234963	36	2.4	36	84	2	100	23	15	5	55	1.62
29235036--29235169	70	1.9	70	81	3	162	20	14	13	51	1.75
29234842--29235175	35	9.5	35	68	9	106	22	16	11	50	1.77
29235405--29235494	35	2.7	33	81	10	85	25	17	10	46	1.79
29235431--29235518	35	2.5	35	79	0	104	22	19	10	47	1.79
29235574--29235651	35	2.2	35	83	2	102	17	15	14	52	1.75
29235501--29235723	102	2.2	102	80	8	238	19	17	13	49	1.79
29235732--29235771	20	2.0	20	95	0	71	20	17	10	52	1.72
29237370--29237427	3	19.3	3	100	0	116	67	0	0	32	0.91
29237950--29237989	7	5.4	7	82	11	53	47	35	0	17	1.48
29237978--29238051	28	2.7	27	78	12	80	54	21	0	24	1.45
29238056--29238131	38	2.0	39	89	2	118	44	26	2	26	1.67
29238079--29238135	30	1.9	30	85	7	80	47	26	1	24	1.62
29238029--29238229	8	26.2	8	67	19	63	51	22	0	24	1.54
29238062--29238143	38	2.2	38	84	4	103	50	24	2	23	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29238093--29238311	62	3.6	62	74	7	153	52	23	0	24	1.51
29240425--29240574	63	2.4	63	81	2	176	18	36	12	32	1.88
29244497--29244525	2	14.5	2	100	0	58	48	0	0	51	1.00
29245548--29245642	40	2.3	41	90	3	147	49	3	12	34	1.57
29245704--29245812	55	2.0	55	100	0	218	33	5	11	49	1.61
29247174--29247222	2	24.5	2	100	0	98	0	48	0	51	1.00
29255285--29255319	2	17.5	2	93	0	61	2	45	0	51	1.16
29262673--29262729	21	2.6	22	83	8	71	45	1	0	52	1.11
29262668--29262723	14	3.8	14	77	15	51	44	1	1	51	1.22
29262685--29262729	22	2.1	21	87	4	63	48	2	0	48	1.13
29270859--29271534	337	2.0	338	93	1	1160	34	9	18	38	1.83
29280556--29280611	12	4.8	12	84	6	71	64	5	3	26	1.32
29280555--29280611	3	19.3	3	77	10	55	63	5	3	28	1.33
29280978--29281223	65	3.8	64	76	9	205	41	12	23	22	1.88
29280978--29281216	64	3.7	64	75	10	225	42	12	22	22	1.87
29281271--29281551	65	4.3	65	74	5	201	43	9	20	25	1.83
29281264--29281551	132	2.2	130	80	4	303	43	10	20	25	1.83
29287456--29287500	16	3.0	16	75	15	51	60	6	8	24	1.51
29288396--29288421	3	8.7	3	100	0	52	30	0	0	69	0.89
29288495--29288593	21	4.9	20	73	13	78	73	1	5	20	1.07
29288514--29288593	12	6.7	11	74	16	54	73	0	5	21	1.01
29288504--29288580	39	2.0	39	87	10	113	70	1	6	22	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29288548--29288594	5	8.8	5	90	4	58	78	0	0	21	0.75
29288548--29288594	17	2.8	17	81	15	62	78	0	0	21	0.75
29289775--29290066	63	4.7	63	72	9	213	40	8	12	38	1.73
29306591--29306633	22	2.0	23	86	9	63	51	0	6	41	1.29
29307715--29307739	7	3.6	7	100	0	50	24	0	0	76	0.80
29316390--29316437	24	2.0	24	92	4	80	47	2	0	50	1.12
29316385--29316434	23	2.3	22	79	6	57	44	2	0	54	1.11
29327827--29327891	32	2.0	33	93	3	114	36	9	20	33	1.84
29334852--29334890	5	7.4	5	94	5	60	41	0	0	58	0.98
29362214--29362256	11	3.9	11	84	0	50	81	2	16	0	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160