genome.fa.s334.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  155  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31333610--31333642	18	1.9	17	88	11	50	24	0	0	75	0.80
31338336--31338370	19	1.9	17	88	11	52	31	0	0	68	0.90
31338350--31338389	13	3.1	13	81	0	53	42	0	0	57	0.98
31355414--31355438	11	2.3	11	100	0	50	36	0	0	64	0.94
31356911--31356941	16	2.0	15	93	6	53	58	0	0	41	0.98
31357213--31357658	216	2.1	216	100	0	892	41	6	7	43	1.59
31360069--31360103	18	2.0	17	94	5	61	25	0	0	74	0.82
31360069--31360105	10	3.9	10	82	13	51	27	0	0	72	0.84
31361840--31361864	12	2.1	12	100	0	50	8	8	8	76	1.18
31366411--31366494	29	2.8	30	80	3	98	40	13	2	44	1.56
31366550--31366629	30	2.7	30	84	1	99	55	7	1	36	1.36
31374355--31374411	23	2.3	25	91	8	91	43	0	0	56	0.99
31374371--31374418	23	2.0	23	92	4	78	43	0	0	56	0.99
31375219--31375287	31	2.2	31	82	5	77	42	0	5	52	1.25
31375283--31375324	18	2.3	18	95	4	75	47	0	0	52	1.00
31375343--31375377	17	1.9	18	88	11	54	71	0	0	28	0.86
31375333--31375374	21	2.0	21	85	0	57	69	0	0	30	0.89
31377760--31377818	29	2.0	29	80	6	66	18	11	28	40	1.86
31415644--31415685	15	2.8	16	85	10	61	42	0	0	57	0.99
31423940--31423971	3	10.7	3	93	0	55	28	0	68	3	1.04
31436590--31436640	17	3.0	17	81	16	61	60	1	0	37	1.08
31444750--31444803	26	2.1	26	92	0	90	37	16	3	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31449922--31450068	42	3.5	42	90	1	224	40	10	24	24	1.87
31451400--31451553	76	2.0	76	94	2	274	20	19	15	44	1.87
31453563--31453606	21	2.0	22	83	12	56	54	4	13	27	1.58
31464600--31464672	37	2.0	38	91	5	123	43	24	16	15	1.86
31466294--31466487	96	2.0	97	87	1	282	41	18	11	28	1.85
31475408--31475437	15	2.0	15	93	0	51	70	0	16	13	1.18
31475435--31475474	20	2.0	20	85	9	55	45	0	7	47	1.31
31475923--31475964	15	2.8	15	85	0	57	2	26	0	71	0.98
31475923--31475967	20	2.2	20	92	0	72	2	24	0	73	0.95
31476947--31476993	25	2.0	24	83	8	60	25	14	2	57	1.49
31480079--31480123	3	15.0	3	95	0	81	0	64	0	35	0.94
31483517--31483578	3	20.7	3	100	0	124	33	32	0	33	1.58
31484477--31484516	20	2.0	21	90	5	64	60	0	0	40	0.97
31497793--31497858	23	2.8	23	78	17	66	60	3	3	33	1.27
31501375--31501472	49	2.0	49	100	0	196	28	16	16	38	1.90
31506993--31507029	18	2.0	19	89	5	58	35	10	8	45	1.69
31517450--31517492	17	2.5	17	84	0	50	34	0	0	65	0.93
31518218--31518243	10	2.6	10	100	0	52	53	7	0	38	1.30
31519133--31519170	15	2.7	14	88	8	51	28	0	0	71	0.87
31520527--31520583	20	2.8	20	79	10	62	47	0	1	50	1.11
31524753--31524782	2	15.0	2	100	0	60	50	0	0	50	1.00
31527125--31527161	14	2.6	15	87	8	51	16	0	8	75	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31527772--31527814	20	2.0	22	86	8	63	51	0	4	44	1.22
31527956--31527982	3	9.0	3	100	0	54	33	0	0	66	0.92
31529699--31529758	31	1.9	31	96	0	111	43	5	3	48	1.41
31536952--31536980	2	14.5	2	100	0	58	0	48	0	51	1.00
31538283--31538339	24	2.4	24	82	5	71	40	0	3	56	1.17
31538283--31538376	25	4.0	25	71	15	76	42	0	3	54	1.16
31541702--31541754	25	2.1	26	82	6	65	35	1	5	56	1.34
31541834--31541892	29	2.1	28	84	9	75	44	0	1	54	1.10
31542586--31542620	16	2.2	16	89	0	52	60	2	2	34	1.26
31542749--31542828	4	18.2	4	74	13	52	50	0	1	48	1.08
31542793--31542826	14	2.4	14	95	0	59	52	0	2	44	1.16
31545551--31545575	10	2.5	10	100	0	50	44	0	8	48	1.32
31546966--31547018	19	2.7	19	97	2	97	39	5	11	43	1.64
31550347--31550376	2	15.0	2	100	0	60	50	0	50	0	1.00
31557030--31557099	24	3.1	21	73	13	59	38	2	0	58	1.13
31557110--31557149	18	2.2	19	90	4	64	50	0	7	42	1.30
31560215--31560303	3	29.7	3	77	0	61	39	1	40	19	1.59
31560215--31560306	12	7.7	12	83	0	85	40	1	40	18	1.58
31568449--31568505	19	2.9	20	78	5	62	45	22	12	19	1.83
31568674--31568817	55	2.6	55	81	4	155	34	16	13	35	1.89
31569124--31569168	19	2.4	19	80	0	54	51	8	17	22	1.73
31569403--31569479	31	2.5	31	82	4	93	35	23	10	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31570884--31570940	21	2.8	20	78	7	60	42	1	19	36	1.62
31571558--31571583	7	3.7	7	100	0	52	57	0	0	42	0.98
31576153--31576178	7	3.7	7	100	0	52	15	11	15	57	1.65
31576836--31576865	2	15.0	2	100	0	60	50	0	0	50	1.00
31577240--31577264	2	12.5	2	100	0	50	0	48	0	52	1.00
31578300--31578348	26	1.9	25	87	4	71	40	6	0	53	1.26
31589108--31589175	34	2.0	34	94	0	118	11	14	10	63	1.53
31597182--31597385	101	2.0	100	88	7	308	33	16	17	32	1.92
31599466--31599490	12	2.1	12	100	0	50	32	8	36	24	1.84
31602441--31602500	22	2.6	22	92	5	93	53	0	0	46	1.00
31604607--31604730	60	2.1	60	96	0	230	33	19	20	27	1.96
31605994--31606036	15	2.9	15	78	0	50	46	2	2	48	1.27
31613630--31613673	23	1.9	23	95	0	79	47	0	2	50	1.13
31614065--31614129	27	2.4	28	76	10	71	29	3	3	64	1.23
31614049--31614113	21	3.0	21	70	22	53	32	1	1	64	1.12
31620445--31620502	28	2.1	28	96	0	107	44	6	17	31	1.75
31624559--31625239	223	3.1	223	90	1	1019	26	27	14	32	1.94
31625280--31625310	16	1.9	16	100	0	62	12	32	16	38	1.86
31627874--31627915	22	1.9	22	85	9	59	40	11	11	35	1.79
31632822--31632863	22	1.9	22	85	0	57	38	9	11	40	1.75
31635567--31635601	18	2.0	18	94	5	63	57	0	0	42	0.99
31635580--31635635	23	2.4	23	85	5	60	60	0	1	37	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31635677--31635707	14	2.3	14	94	5	55	51	0	0	48	1.00
31635682--31635732	16	3.4	15	76	7	50	47	1	0	50	1.12
31663380--31663406	5	5.4	5	100	0	54	77	0	0	22	0.76
31667583--31667607	2	12.5	2	100	0	50	0	0	48	52	1.00
31677258--31677304	24	2.0	23	84	12	60	36	2	0	61	1.08
31685146--31685195	26	1.9	26	91	0	82	54	4	18	24	1.61
31690306--31690340	14	2.5	13	86	13	52	51	0	0	48	1.00
31723117--31723182	27	2.5	25	76	14	62	40	0	4	54	1.21
31729960--31730007	20	2.4	20	96	0	87	14	22	16	45	1.84
31733977--31734010	3	12.0	3	93	6	54	29	0	0	70	0.87
31734439--31734469	3	10.3	3	100	0	62	67	0	0	32	0.91
31736781--31736841	23	2.7	23	76	5	70	37	3	27	31	1.73
31736912--31736945	14	2.6	14	90	9	54	20	0	26	52	1.46
31752020--31752044	2	12.5	2	100	0	50	0	0	52	48	1.00
31767485--31767583	51	1.9	51	91	0	162	37	38	7	17	1.77
31774378--31774415	20	1.9	20	88	0	58	73	2	15	7	1.17
31782157--31782218	16	3.8	16	77	12	72	51	1	3	43	1.27
31790550--31790585	16	2.3	15	90	4	54	11	16	0	72	1.12
31790551--31790586	13	2.7	13	91	4	54	11	19	0	69	1.18
31794483--31794813	59	5.7	58	86	5	456	34	11	8	45	1.70
31794483--31794813	116	2.8	114	86	10	472	34	11	8	45	1.70
31794483--31794832	175	2.0	178	89	3	539	34	11	8	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31794846--31794920	6	13.3	6	72	14	54	78	1	4	16	0.96
31794835--31794934	16	6.5	15	69	23	57	76	1	6	17	1.05
31794846--31794920	22	3.4	22	72	20	66	78	1	4	16	0.96
31794856--31794908	17	3.1	17	83	5	72	81	1	3	13	0.92
31794842--31794920	17	4.6	17	70	20	67	78	1	5	15	0.99
31795937--31796011	25	3.0	26	79	16	86	65	4	0	30	1.11
31796028--31796085	18	3.0	20	82	12	75	70	5	0	24	1.07
31797506--31797623	37	3.1	37	67	25	111	41	12	2	43	1.56
31797519--31797637	33	3.3	33	67	25	89	41	12	1	44	1.52
31797506--31797646	76	1.9	76	98	0	273	41	12	2	44	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160