genome.fa.s334.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  34  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8342198--8342230	15	2.1	16	88	5	50	75	9	0	15	1.03
8343121--8343192	32	2.3	31	90	4	117	22	0	13	63	1.29
8343530--8344045	272	1.9	276	88	2	781	55	7	7	29	1.55
8345565--8345604	21	1.9	21	94	0	71	37	10	2	50	1.50
8356386--8356411	13	2.0	13	100	0	52	61	7	0	30	1.24
8357553--8357625	36	2.0	36	91	0	119	34	20	6	38	1.79
8357929--8358010	43	1.9	43	87	5	121	19	29	21	29	1.98
8358198--8358231	13	2.5	13	95	4	59	38	29	17	14	1.90
8364540--8364566	2	13.5	2	100	0	54	48	0	0	51	1.00
8366326--8366357	15	2.0	17	88	11	50	56	0	0	43	0.99
8368883--8368932	17	2.9	17	80	14	57	50	2	0	48	1.12
8369382--8369420	2	20.0	2	86	5	53	53	0	2	43	1.14
8373526--8373613	30	3.0	29	81	6	97	52	9	3	35	1.50
8377044--8377081	19	2.0	19	89	0	58	42	5	15	36	1.70
8385255--8385319	33	2.0	33	100	0	130	38	21	9	30	1.85
8385691--8385744	16	3.5	16	75	10	58	35	9	14	40	1.78
8390202--8390292	31	2.9	29	80	9	92	35	14	16	34	1.89
8390227--8390307	31	2.6	30	82	5	99	33	13	16	37	1.87
8391086--8391124	21	1.9	20	89	5	60	0	12	2	84	0.72
8391654--8391694	13	3.0	14	85	7	57	60	0	7	31	1.24
8392386--8392428	19	2.2	19	83	8	50	37	11	4	46	1.61
8408186--8408249	22	3.0	21	80	8	74	56	0	9	34	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8411657--8411709	8	6.2	8	83	12	61	3	0	9	86	0.68
8411657--8411716	9	6.8	9	82	5	70	3	0	11	85	0.72
8411658--8411716	5	12.2	5	81	13	52	3	0	11	84	0.73
8412643--8413031	193	2.0	195	90	2	622	37	14	10	37	1.80
8413086--8413114	12	2.5	12	94	5	51	31	0	0	68	0.89
8413624--8413656	18	1.9	17	88	11	50	54	0	0	45	0.99
8414632--8414676	20	2.2	20	88	7	65	73	0	0	26	0.84
8417776--8417805	2	15.5	2	93	6	53	50	0	0	50	1.00
8419077--8419107	15	2.1	15	93	0	53	51	3	0	45	1.17
8420404--8420457	29	1.9	28	88	7	83	37	3	1	57	1.27
8420473--8420586	41	2.8	41	82	5	149	34	15	10	39	1.82
8420595--8420624	12	2.4	13	94	5	53	40	0	0	60	0.97
8422413--8422514	15	6.3	15	71	20	64	19	4	5	69	1.28
8422821--8422865	17	2.6	17	82	6	56	60	2	2	35	1.22
8431714--8431760	22	2.1	23	84	4	60	80	4	10	4	0.98
8432864--8433029	39	4.3	38	84	3	165	24	7	15	51	1.70
8434282--8434378	16	5.8	16	72	22	76	20	2	5	72	1.15
8434287--8434372	31	2.8	29	74	22	77	20	2	5	70	1.19
8434277--8434378	15	6.2	15	70	22	55	19	1	6	71	1.18
8434291--8434389	50	1.9	52	86	10	141	21	3	5	70	1.20
8434396--8434433	17	2.2	17	86	9	51	52	0	2	44	1.14
8434483--8434609	59	2.1	61	79	5	134	53	7	3	35	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8434818--8434856	18	2.0	20	85	9	55	48	0	0	51	1.00
8437170--8437245	21	3.9	19	74	14	57	64	1	1	32	1.10
8437429--8437480	21	2.5	21	81	6	61	46	7	0	46	1.31
8437850--8437892	19	2.4	17	76	7	50	51	0	2	46	1.13
8439681--8439715	2	17.5	2	93	0	61	2	0	45	51	1.16
8446479--8446847	184	2.0	184	89	1	560	42	8	15	33	1.76
8450298--8450340	22	2.0	22	81	9	52	25	16	2	55	1.53
8452114--8452157	22	2.0	22	86	4	61	54	0	0	45	0.99
8452969--8453003	17	2.0	17	88	5	52	65	0	0	34	0.93
8453345--8453396	21	2.5	21	90	6	79	50	0	0	50	1.00
8453345--8453396	22	2.5	22	93	6	90	50	0	0	50	1.00
8453361--8453434	30	2.5	30	80	4	80	55	1	0	43	1.08
8453384--8453442	16	3.7	16	75	4	57	59	1	0	38	1.08
8453386--8453434	8	6.1	8	75	0	53	57	2	0	40	1.10
8455424--8455448	13	1.9	13	100	0	50	28	0	24	48	1.52
8455503--8455527	11	2.3	11	100	0	50	40	8	0	52	1.31
8456529--8456597	22	3.1	22	80	0	84	36	4	1	57	1.27
8456529--8456603	26	2.9	25	80	7	87	34	4	1	60	1.24
8456535--8456603	30	2.3	30	87	0	93	33	2	1	62	1.19
8457138--8457166	14	2.1	14	93	6	51	6	6	6	79	1.06
8460976--8461015	19	2.0	20	90	4	64	15	0	5	80	0.88
8461039--8461082	3	14.7	3	100	0	88	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8468797--8468892	21	4.6	22	76	16	89	35	13	20	30	1.91
8468797--8468891	41	2.3	41	92	1	154	34	13	21	30	1.92
8472714--8472830	43	2.7	43	85	0	153	25	15	14	44	1.84
8473945--8474014	3	23.7	3	97	2	133	32	0	0	67	0.91
8474130--8474259	45	2.8	47	78	14	153	40	10	6	41	1.67
8474118--8474266	45	3.4	45	73	20	134	43	9	6	40	1.61
8477302--8477379	22	3.6	22	77	14	81	42	6	0	51	1.27
8477539--8477609	20	3.5	21	71	17	60	36	4	1	57	1.27
8477810--8477877	20	3.4	20	67	18	52	35	1	4	58	1.27
8478194--8478250	23	2.6	22	76	13	55	29	3	3	63	1.28
8478414--8478463	21	2.5	19	78	12	55	38	2	4	56	1.30
8478914--8478947	16	2.1	17	88	5	52	35	11	0	52	1.38
8478994--8479397	214	1.9	213	81	4	483	32	9	5	52	1.56
8478153--8480263	929	2.3	901	77	10	1906	31	9	5	52	1.58
8480768--8480807	22	1.9	20	85	10	53	37	10	7	45	1.66
8483160--8483375	78	2.8	76	81	6	254	49	8	12	30	1.69
8489001--8489025	5	5.0	5	100	0	50	0	20	20	60	1.37
8489577--8489624	22	2.2	22	92	0	78	62	6	16	14	1.51
8490329--8490353	6	4.2	6	100	0	50	0	64	0	36	0.94
8496911--8497144	130	1.8	126	87	3	342	33	10	11	44	1.74
8496911--8497177	130	2.0	129	83	7	335	34	10	10	43	1.75
8499703--8499728	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8501818--8501856	12	3.2	13	78	14	55	38	5	2	53	1.37
8502345--8502501	3	54.0	3	78	18	156	33	3	1	61	1.22
8503276--8503304	12	2.4	12	100	0	58	17	24	24	34	1.96
8503355--8503396	19	2.4	17	84	11	57	16	0	7	76	1.00
8508989--8509147	66	2.4	66	84	2	185	18	25	11	44	1.84
8509244--8509462	121	1.8	121	81	4	271	21	23	11	43	1.85
8510568--8510646	5	14.8	5	75	19	63	17	1	5	75	1.04
8510561--8510633	17	4.1	17	77	13	76	15	2	4	78	1.02
8510568--8510630	23	2.9	22	88	6	92	15	1	4	77	1.01
8511951--8511980	14	2.1	14	93	0	51	50	3	0	46	1.18
8522003--8522053	16	3.2	16	66	5	50	13	15	5	64	1.46
8528292--8528334	21	2.0	21	86	0	59	41	18	13	25	1.88
8534837--8534881	2	22.5	2	86	0	54	44	2	6	46	1.42
8541814--8541858	14	3.1	14	81	12	54	53	0	0	46	1.00
8541819--8541855	8	4.6	8	86	0	56	56	0	0	43	0.99
8548895--8548944	24	2.1	24	88	7	75	20	22	10	48	1.79
8549010--8549072	25	2.5	25	84	5	74	22	26	14	36	1.92
8549589--8549613	2	12.5	2	100	0	50	52	0	0	48	1.00
8550158--8550202	22	2.0	22	84	16	58	46	6	22	24	1.75
8555515--8555657	71	2.0	71	91	2	234	20	23	5	49	1.70
8557109--8557168	27	2.3	26	82	2	66	50	5	6	38	1.51
8559112--8559202	36	2.5	36	78	3	85	46	8	18	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8561802--8561867	30	2.3	27	73	14	69	45	3	30	21	1.67
8562178--8562237	21	3.0	21	72	18	65	23	6	20	50	1.71
8565390--8565421	2	16.0	2	100	0	64	50	0	0	50	1.00
8566607--8566636	2	15.0	2	100	0	60	50	0	0	50	1.00
8567989--8568085	50	1.9	50	89	0	149	35	8	8	48	1.63
8568568--8568598	16	2.0	16	93	6	55	61	0	6	32	1.21
8581280--8581325	10	4.7	10	81	5	58	65	0	0	34	0.93
8581282--8581325	20	2.2	20	92	4	72	68	0	0	31	0.90
8586436--8586472	3	12.3	3	100	0	74	64	0	0	35	0.94
8586471--8586507	3	12.7	3	94	5	67	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160