genome.fa.s334.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  58  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12224695--12224797	30	3.4	30	84	7	88	47	2	9	39	1.51
12224730--12224844	30	3.9	29	76	8	106	53	1	6	39	1.36
12225476--12225795	112	2.8	108	78	7	289	36	8	6	49	1.59
12226502--12226696	99	2.0	99	98	0	381	40	11	13	34	1.81
12226647--12226824	91	2.0	91	97	0	338	28	15	18	38	1.91
12227212--12227399	61	3.1	59	77	6	160	41	21	2	34	1.67
12227370--12227426	26	2.2	26	90	0	87	36	28	5	29	1.79
12228693--12228739	23	2.1	23	84	4	60	19	6	12	61	1.52
12228916--12228970	18	3.2	18	82	10	71	23	0	30	45	1.53
12228981--12229054	22	3.3	23	75	16	66	21	2	27	48	1.63
12228999--12229039	15	2.7	15	88	3	55	14	0	29	56	1.39
12229030--12229086	15	3.7	15	92	2	87	28	7	21	43	1.78
12229030--12229143	31	3.7	30	75	8	95	27	5	25	42	1.76
12230812--12231061	48	4.9	49	70	16	157	27	19	12	41	1.86
12230861--12231139	55	5.1	55	73	12	193	28	16	10	45	1.80
12230969--12231074	48	2.2	47	81	6	124	29	16	8	45	1.77
12231243--12231289	24	2.0	24	84	16	62	42	6	0	51	1.27
12238537--12238584	25	1.9	25	100	0	96	33	16	8	41	1.78
12242927--12242965	17	2.3	17	90	0	60	53	2	35	7	1.43
12252684--12252715	17	1.9	16	93	6	55	0	18	12	68	1.20
12260874--12260906	2	16.5	2	100	0	66	0	0	48	51	1.00
12262495--12262532	17	2.1	18	90	9	60	68	5	0	26	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12262646--12262689	19	2.2	20	88	4	63	56	0	6	36	1.26
12262763--12262828	19	3.3	19	70	16	53	63	7	3	25	1.35
12263095--12263160	27	2.5	26	87	5	87	21	3	9	66	1.33
12263095--12263168	27	2.8	26	81	8	78	22	2	9	64	1.36
12263261--12263309	18	2.7	17	75	12	53	20	6	10	63	1.47
12263262--12263309	19	2.6	18	75	15	53	18	6	10	64	1.45
12264796--12264840	3	15.0	3	100	0	90	33	0	0	66	0.92
12267051--12267100	18	2.8	18	73	11	57	34	0	28	38	1.57
12267314--12267346	17	1.9	17	93	0	57	60	12	3	24	1.46
12275801--12275834	17	1.9	18	94	5	61	26	0	8	64	1.22
12277603--12277647	18	2.5	18	96	0	81	20	22	28	28	1.98
12278197--12278561	42	8.8	42	73	10	218	43	20	10	24	1.84
12278325--12278608	84	3.3	84	75	8	232	44	20	10	24	1.83
12291346--12291384	21	1.9	21	84	5	53	51	10	5	33	1.58
12307458--12307515	3	19.3	3	100	0	116	34	0	0	65	0.93
12309588--12309634	23	2.1	22	84	4	58	23	19	17	40	1.91
12310498--12310678	60	3.1	58	88	5	265	37	8	3	50	1.51
12311452--12311480	12	2.3	13	88	11	51	0	10	13	75	1.04
12311832--12312040	42	5.0	42	83	2	258	45	20	11	22	1.83
12311856--12312040	85	2.2	84	89	0	271	47	18	10	23	1.80
12312222--12312268	22	2.1	23	84	11	62	34	17	14	34	1.90
12312454--12312600	78	1.9	79	89	1	233	33	17	11	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12312562--12312619	22	2.7	22	83	2	82	37	18	8	34	1.82
12312953--12312996	23	1.9	23	81	9	54	27	27	4	40	1.75
12313874--12313938	8	8.0	8	91	3	103	12	9	0	78	0.96
12313855--12313936	9	9.6	9	83	13	86	8	9	1	80	0.96
12316825--12316892	28	2.4	28	85	7	93	48	5	19	26	1.71
12317938--12318113	58	3.0	57	78	12	203	36	7	4	51	1.51
12317941--12318113	61	2.9	59	80	10	192	36	7	4	52	1.49
12318161--12318204	19	2.3	19	80	0	52	77	6	0	15	0.97
12319042--12319088	18	2.7	18	83	3	60	10	6	0	82	0.82
12323859--12323900	2	20.5	2	95	4	75	47	0	2	50	1.14
12324507--12324607	30	3.6	28	77	16	102	51	1	3	42	1.31
12324487--12324575	30	2.9	30	78	8	83	50	3	3	42	1.35
12326033--12326098	35	1.9	35	84	9	91	31	9	13	45	1.75
12327483--12328187	353	2.0	352	87	1	1002	24	17	21	35	1.95
12330686--12330728	3	14.7	3	90	4	70	65	0	0	34	0.93
12336856--12336938	42	2.0	42	92	0	139	45	16	7	30	1.74
12342500--12342724	49	4.6	49	78	3	202	34	15	16	34	1.90
12342500--12342727	99	2.3	100	80	6	259	33	14	16	34	1.90
12342817--12342842	12	2.2	12	100	0	52	61	0	0	38	0.96
12343534--12343612	34	2.4	33	83	12	92	27	12	15	44	1.82
12351529--12351581	27	2.0	27	96	0	97	0	33	0	66	0.92
12352299--12352606	44	7.2	43	79	7	288	44	20	11	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12352352--12352613	128	2.1	124	84	4	337	43	20	11	24	1.85
12352335--12352606	84	3.2	83	81	9	287	44	19	12	23	1.84
12353011--12353065	21	2.5	21	82	5	65	41	16	7	34	1.76
12353038--12353097	30	2.0	30	86	0	84	38	15	10	36	1.80
12354139--12354217	7	11.6	7	75	15	60	7	12	1	78	1.01
12354132--12354253	8	15.5	8	73	19	71	10	9	1	77	1.05
12354122--12354206	40	2.2	39	82	6	109	7	15	1	76	1.06
12355621--12355685	31	2.1	31	100	0	130	33	3	29	33	1.73
12363814--12363862	26	1.9	26	83	4	64	38	12	6	42	1.67
12364167--12364213	16	2.9	16	75	12	51	78	10	4	6	1.06
12370987--12371021	18	1.9	18	100	0	70	37	5	0	57	1.23
12370990--12371047	24	2.4	25	80	11	68	34	1	0	63	1.04
12371061--12371128	4	17.5	4	73	11	61	70	1	4	23	1.13
12371077--12371128	15	3.4	14	82	12	59	73	1	1	23	1.04
12371077--12371140	30	2.1	31	82	2	76	71	6	3	18	1.20
12386823--12386868	18	2.6	18	100	0	92	32	10	10	45	1.74
12389920--12389982	30	2.1	30	90	0	99	57	12	7	22	1.61
12395321--12395354	2	17.0	2	100	0	68	50	0	0	50	1.00
12395463--12395586	28	4.5	27	72	16	76	46	15	6	31	1.71
12395489--12395566	27	2.8	27	75	13	77	47	17	5	29	1.69
12409139--12409186	18	2.7	17	81	9	60	25	0	2	72	0.95
12409175--12409219	3	15.0	3	100	0	90	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12412433--12412465	13	2.5	13	85	14	50	36	9	0	54	1.32
12414450--12414513	16	3.8	16	79	8	65	76	1	4	17	1.03
12416617--12416668	3	17.3	3	100	0	104	32	0	0	67	0.91
12417112--12417159	16	2.8	17	78	15	55	39	0	8	52	1.32
12417135--12417354	116	1.9	116	79	5	248	40	7	10	41	1.67
12417680--12417735	29	2.0	29	82	10	71	25	3	25	46	1.69
12418145--12418327	62	3.0	61	82	7	167	46	8	9	35	1.67
12418182--12418327	62	2.4	62	85	5	181	47	7	10	34	1.66
12418707--12418735	11	2.7	11	94	5	51	17	20	6	55	1.65
12419889--12419935	23	2.0	23	100	0	94	25	8	21	44	1.80
12422200--12422262	24	2.6	24	82	0	63	36	6	3	53	1.42
12426808--12426913	30	3.5	30	79	5	97	37	8	4	49	1.54
12426780--12426912	31	4.4	31	75	11	98	37	6	4	51	1.47
12426941--12427021	29	2.8	30	80	12	91	54	1	6	38	1.33
12429849--12429970	25	4.5	25	75	18	77	48	0	1	49	1.16
12429978--12430030	23	2.6	20	80	16	56	73	1	0	24	0.93
12430553--12430585	7	4.7	7	88	11	50	27	0	0	72	0.85
12430554--12430580	13	2.1	13	100	0	54	29	0	0	70	0.88
12430646--12430678	10	3.3	10	87	12	50	57	0	6	36	1.23
12430862--12430908	22	2.1	22	92	0	85	36	2	4	57	1.30
12430799--12431068	37	7.6	37	70	17	107	48	1	1	49	1.17
12430846--12431068	15	12.7	17	68	27	73	47	0	1	49	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12430950--12431037	22	4.2	22	82	7	112	59	0	1	39	1.05
12430925--12431046	36	3.2	37	79	10	131	54	0	0	44	1.05
12430947--12431052	22	5.2	22	73	20	95	55	0	0	43	1.06
12431022--12431062	14	3.0	14	80	13	50	46	0	0	53	1.00
12430782--12431069	18	15.8	19	67	24	85	48	1	1	48	1.18
12430777--12431065	40	7.3	40	72	19	162	48	1	1	49	1.18
12431201--12431239	7	5.6	7	96	0	60	74	5	0	20	1.01
12447358--12447387	5	6.2	5	92	7	53	80	0	0	20	0.72
12447387--12447962	33	17.5	33	87	2	667	29	19	16	34	1.94
12448142--12448193	21	2.5	21	90	0	77	21	26	13	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160